Wall clock time and date at job start Tue Mar 31 2020 00:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 119.99917 * 2 1 4 4 C 1.47096 * 120.00443 * 353.20576 * 3 2 1 5 5 O 1.21620 * 119.99530 * 353.62825 * 4 3 2 6 6 N 1.34772 * 120.00544 * 173.62467 * 4 3 2 7 7 C 1.46503 * 119.99761 * 0.02562 * 6 4 3 8 8 C 1.46497 * 120.00551 * 180.02562 * 6 4 3 9 9 C 1.53006 * 109.46934 * 264.52040 * 8 6 4 10 10 H 1.08998 * 112.96232 * 294.43941 * 9 8 6 11 11 C 1.53949 * 113.77037 * 66.11601 * 9 8 6 12 12 C 1.53942 * 86.28605 * 137.90706 * 11 9 8 13 13 N 1.47582 * 86.24805 * 336.33595 * 12 11 9 14 14 C 1.36936 * 134.49760 * 204.69729 * 13 12 11 15 15 H 1.07997 * 119.99898 * 184.63218 * 14 13 12 16 16 C 1.38807 * 119.99842 * 4.63444 * 14 13 12 17 17 N 1.31624 * 120.00262 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99855 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47293 * 90.00075 * 18 16 14 20 20 H 1.48503 * 109.46920 * 209.99645 * 18 16 14 21 21 H 1.48497 * 109.47212 * 329.99655 * 18 16 14 22 22 C 1.50704 * 120.00015 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49587 * 8.74544 * 22 2 1 24 24 C 1.53007 * 117.49548 * 300.08736 * 22 2 1 25 25 H 1.08998 * 109.46796 * 84.53590 * 1 2 3 26 26 H 1.08996 * 109.47096 * 204.52982 * 1 2 3 27 27 H 1.09002 * 109.47011 * 324.53318 * 1 2 3 28 28 H 1.08010 * 119.99845 * 173.20666 * 3 2 1 29 29 H 1.08996 * 109.47448 * 275.55698 * 7 6 4 30 30 H 1.09006 * 109.47093 * 35.55727 * 7 6 4 31 31 H 1.08995 * 109.46850 * 155.55086 * 7 6 4 32 32 H 1.08995 * 109.47652 * 144.51548 * 8 6 4 33 33 H 1.09005 * 109.46726 * 24.51348 * 8 6 4 34 34 H 1.08995 * 113.73895 * 23.56632 * 11 9 8 35 35 H 1.08994 * 113.83848 * 252.26224 * 11 9 8 36 36 H 1.09002 * 113.77102 * 90.69863 * 12 11 9 37 37 H 1.09003 * 113.77309 * 221.97778 * 12 11 9 38 38 H 0.96994 * 120.00164 * 179.97438 * 17 16 14 39 39 H 1.08994 * 115.55030 * 154.41660 * 22 2 1 40 40 H 1.08994 * 117.50143 * 0.02562 * 23 22 2 41 41 H 1.09001 * 117.50061 * 145.02573 * 23 22 2 42 42 H 1.08997 * 117.49248 * 214.97851 * 24 22 2 43 43 H 1.08995 * 117.49983 * 359.97204 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4443 2.4212 -0.1507 5 8 0.2521 2.4138 -0.3910 6 7 2.0986 3.5924 -0.0224 7 6 3.5349 3.6013 0.2665 8 6 1.3738 4.8567 -0.1720 9 6 1.5214 5.3623 -1.6085 10 1 2.5470 5.6310 -1.8615 11 6 0.8390 4.4637 -2.6558 12 6 0.3562 5.7687 -3.3144 13 7 0.5236 6.3876 -1.9851 14 6 -0.0254 7.4727 -1.3556 15 1 0.3288 7.7665 -0.3786 16 6 -1.0373 8.1948 -1.9733 17 7 -1.4686 7.8370 -3.1642 18 14 -1.7858 9.6754 -1.1148 19 1 -1.0275 10.8976 -1.4844 20 1 -3.2025 9.8265 -1.5336 21 1 -1.7225 9.4793 0.3558 22 6 2.2606 -1.3051 -0.0006 23 6 1.4521 -2.5875 -0.2075 24 6 2.0245 -2.2576 1.1734 25 1 -0.3633 0.0979 -1.0230 26 1 -0.3633 -0.9349 0.4266 27 1 -0.3633 0.8370 0.5963 28 1 3.2464 1.1550 0.1106 29 1 3.6899 3.5069 1.3413 30 1 4.0134 2.7657 -0.2443 31 1 3.9699 4.5377 -0.0825 32 1 1.7845 5.5948 0.5170 33 1 0.3186 4.6991 0.0511 34 1 0.0327 3.8523 -2.2508 35 1 1.5369 3.8944 -3.2697 36 1 1.0389 6.1584 -4.0696 37 1 -0.6786 5.7324 -3.6549 38 1 -2.1759 8.3414 -3.5956 39 1 3.2637 -1.2686 -0.4252 40 1 0.3753 -2.4872 -0.3436 41 1 1.9235 -3.3948 -0.7679 42 1 2.8724 -2.8479 1.5207 43 1 1.3246 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230947452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:48 Heat of formation + Delta-G solvation = 70.031989 kcal Electronic energy + Delta-G solvation = -21923.400440 eV Core-core repulsion = 18779.226097 eV Total energy + Delta-G solvation = -3144.174343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.89772 -38.27599 -37.44214 -35.15531 -33.19468 -32.05563 -28.97773 -27.72869 -27.51081 -26.14174 -24.09023 -23.16605 -22.65528 -22.06874 -19.53208 -18.84812 -18.08142 -17.08979 -16.63015 -16.09660 -15.51858 -15.19892 -14.71288 -14.54695 -13.96949 -13.62459 -13.29048 -13.20142 -12.98032 -12.62296 -12.48148 -12.17674 -12.08116 -11.82817 -11.69136 -11.33122 -11.25864 -11.09522 -10.93770 -10.75649 -10.67808 -10.57515 -10.37274 -9.73342 -9.61012 -9.49846 -9.17838 -8.95790 -8.67602 -8.15172 -6.75625 -5.65619 -2.98948 1.37724 3.29868 3.43982 3.44776 3.49061 3.51351 3.71724 4.31155 4.54195 4.58310 4.66193 4.81754 4.97404 5.07121 5.25103 5.32243 5.35003 5.47636 5.52510 5.54894 5.61614 5.71039 5.74101 5.78545 5.80336 5.91906 5.95780 6.07459 6.11203 6.24909 6.47022 6.50210 6.56568 6.67653 6.85555 6.88519 6.93352 7.38425 7.60566 7.73645 7.77257 8.10522 8.56255 9.14075 9.80895 10.72662 11.50440 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.003631 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.651638 B = 7709.953584 C = 7888.304686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.008 4.008 3 C -0.224 4.224 4 C 0.542 3.458 5 O -0.529 6.529 6 N -0.608 5.608 7 C 0.081 3.919 8 C 0.117 3.883 9 C 0.128 3.872 10 H 0.040 0.960 11 C -0.155 4.155 12 C 0.155 3.845 13 N -0.601 5.601 14 C -0.220 4.220 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C -0.130 4.130 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.125 0.875 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.076 0.924 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 -18.957 7.381 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.009 4.009 3 C -0.244 4.244 4 C 0.333 3.667 5 O -0.408 6.408 6 N -0.341 5.341 7 C -0.062 4.062 8 C -0.006 4.006 9 C 0.020 3.980 10 H 0.057 0.943 11 C -0.193 4.193 12 C 0.029 3.971 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.740 3.260 19 H -0.218 1.218 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.149 4.149 23 C -0.209 4.209 24 C -0.205 4.205 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.950 -18.639 7.289 22.351 hybrid contribution 0.087 1.088 0.337 1.143 sum 10.037 -17.551 7.627 21.609 Atomic orbital electron populations 1.21168 0.90745 1.02182 1.03950 1.21754 0.96188 0.92184 0.90814 1.22415 1.00199 0.92100 1.09720 1.18421 0.86913 0.83933 0.77412 1.90774 1.14945 1.87048 1.48067 1.47697 1.09224 1.06469 1.70725 1.21754 0.81196 1.03015 1.00273 1.21792 0.98319 0.82631 0.97901 1.22587 0.93347 0.89339 0.92702 0.94267 1.23769 0.99928 0.97444 0.98155 1.22270 1.00212 0.86651 0.87922 1.45989 1.44660 1.29728 1.12327 1.18979 1.13127 1.02787 0.99925 0.90525 1.24772 0.98992 0.99731 0.96964 1.69832 1.30959 1.41214 1.14644 0.86153 0.78514 0.82605 0.78686 1.21782 1.21674 1.20657 1.21269 1.00094 0.88901 1.04595 1.23077 1.00632 0.97709 0.99515 1.22988 1.03663 1.02114 0.91763 0.90071 0.93000 0.88935 0.85753 0.93037 0.91523 0.90886 0.91719 0.88867 0.89527 0.94183 0.96258 0.90549 0.93775 0.86769 0.87924 0.88374 0.88365 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 7.91 36.01 0.28 -1.26 16 2 C -0.01 -0.09 5.81 -101.16 -0.59 -0.67 16 3 C -0.22 -2.76 8.88 -37.81 -0.34 -3.09 16 4 C 0.54 8.74 7.08 -12.67 -0.09 8.65 16 5 O -0.53 -10.32 11.23 5.26 0.06 -10.26 16 6 N -0.61 -9.39 2.80 -182.98 -0.51 -9.91 16 7 C 0.08 0.88 10.06 59.85 0.60 1.48 16 8 C 0.12 2.23 5.38 -4.04 -0.02 2.20 16 9 C 0.13 2.76 4.58 -66.66 -0.31 2.45 16 10 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.15 -3.36 7.27 -25.79 -0.19 -3.55 16 12 C 0.15 3.95 7.63 -2.98 -0.02 3.93 16 13 N -0.60 -16.07 3.59 -169.59 -0.61 -16.68 16 14 C -0.22 -6.35 10.52 -15.06 -0.16 -6.51 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -28.31 11.30 55.49 0.63 -27.68 16 18 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.13 -1.13 6.01 -91.77 -0.55 -1.68 16 23 C -0.17 -1.28 9.77 -26.69 -0.26 -1.54 16 24 C -0.17 -1.21 10.10 -26.69 -0.27 -1.48 16 25 H 0.08 1.10 8.05 -51.93 -0.42 0.69 16 26 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 27 H 0.09 1.38 6.11 -51.93 -0.32 1.06 16 28 H 0.12 1.21 6.29 -52.48 -0.33 0.88 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.59 6.35 -51.93 -0.33 0.26 16 31 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 32 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 33 H 0.09 2.08 7.26 -51.93 -0.38 1.70 16 34 H 0.09 2.02 6.62 -51.93 -0.34 1.68 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 2.16 6.95 -51.93 -0.36 1.80 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.79 6.42 -51.93 -0.33 0.45 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.36 344.07 -9.18 -42.54 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.90 Total: 0.45 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.00 Total: -1.40 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.49 Total: -54.27 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.36 -9.18 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.568 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds