Wall clock time and date at job start Tue Mar 31 2020 00:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 119.99917 * 2 1 4 4 C 1.47096 * 120.00443 * 353.20576 * 3 2 1 5 5 O 1.21620 * 119.99530 * 353.62825 * 4 3 2 6 6 N 1.34772 * 120.00544 * 173.62467 * 4 3 2 7 7 C 1.46503 * 119.99761 * 0.02562 * 6 4 3 8 8 C 1.46497 * 120.00551 * 180.02562 * 6 4 3 9 9 C 1.53006 * 109.46934 * 264.52040 * 8 6 4 10 10 H 1.08998 * 112.96232 * 294.43941 * 9 8 6 11 11 C 1.53949 * 113.77037 * 66.11601 * 9 8 6 12 12 C 1.53942 * 86.28605 * 137.90706 * 11 9 8 13 13 N 1.47582 * 86.24805 * 336.33595 * 12 11 9 14 14 C 1.36936 * 134.49760 * 204.69729 * 13 12 11 15 15 H 1.07997 * 119.99898 * 184.63218 * 14 13 12 16 16 C 1.38807 * 119.99842 * 4.63444 * 14 13 12 17 17 N 1.31624 * 120.00262 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99855 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47293 * 90.00075 * 18 16 14 20 20 H 1.48503 * 109.46920 * 209.99645 * 18 16 14 21 21 H 1.48497 * 109.47212 * 329.99655 * 18 16 14 22 22 C 1.50704 * 120.00015 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49587 * 8.74544 * 22 2 1 24 24 C 1.53007 * 117.49548 * 300.08736 * 22 2 1 25 25 H 1.08998 * 109.46796 * 84.53590 * 1 2 3 26 26 H 1.08996 * 109.47096 * 204.52982 * 1 2 3 27 27 H 1.09002 * 109.47011 * 324.53318 * 1 2 3 28 28 H 1.08010 * 119.99845 * 173.20666 * 3 2 1 29 29 H 1.08996 * 109.47448 * 275.55698 * 7 6 4 30 30 H 1.09006 * 109.47093 * 35.55727 * 7 6 4 31 31 H 1.08995 * 109.46850 * 155.55086 * 7 6 4 32 32 H 1.08995 * 109.47652 * 144.51548 * 8 6 4 33 33 H 1.09005 * 109.46726 * 24.51348 * 8 6 4 34 34 H 1.08995 * 113.73895 * 23.56632 * 11 9 8 35 35 H 1.08994 * 113.83848 * 252.26224 * 11 9 8 36 36 H 1.09002 * 113.77102 * 90.69863 * 12 11 9 37 37 H 1.09003 * 113.77309 * 221.97778 * 12 11 9 38 38 H 0.96994 * 120.00164 * 179.97438 * 17 16 14 39 39 H 1.08994 * 115.55030 * 154.41660 * 22 2 1 40 40 H 1.08994 * 117.50143 * 0.02562 * 23 22 2 41 41 H 1.09001 * 117.50061 * 145.02573 * 23 22 2 42 42 H 1.08997 * 117.49248 * 214.97851 * 24 22 2 43 43 H 1.08995 * 117.49983 * 359.97204 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4443 2.4212 -0.1507 5 8 0.2521 2.4138 -0.3910 6 7 2.0986 3.5924 -0.0224 7 6 3.5349 3.6013 0.2665 8 6 1.3738 4.8567 -0.1720 9 6 1.5214 5.3623 -1.6085 10 1 2.5470 5.6310 -1.8615 11 6 0.8390 4.4637 -2.6558 12 6 0.3562 5.7687 -3.3144 13 7 0.5236 6.3876 -1.9851 14 6 -0.0254 7.4727 -1.3556 15 1 0.3288 7.7665 -0.3786 16 6 -1.0373 8.1948 -1.9733 17 7 -1.4686 7.8370 -3.1642 18 14 -1.7858 9.6754 -1.1148 19 1 -1.0275 10.8976 -1.4844 20 1 -3.2025 9.8265 -1.5336 21 1 -1.7225 9.4793 0.3558 22 6 2.2606 -1.3051 -0.0006 23 6 1.4521 -2.5875 -0.2075 24 6 2.0245 -2.2576 1.1734 25 1 -0.3633 0.0979 -1.0230 26 1 -0.3633 -0.9349 0.4266 27 1 -0.3633 0.8370 0.5963 28 1 3.2464 1.1550 0.1106 29 1 3.6899 3.5069 1.3413 30 1 4.0134 2.7657 -0.2443 31 1 3.9699 4.5377 -0.0825 32 1 1.7845 5.5948 0.5170 33 1 0.3186 4.6991 0.0511 34 1 0.0327 3.8523 -2.2508 35 1 1.5369 3.8944 -3.2697 36 1 1.0389 6.1584 -4.0696 37 1 -0.6786 5.7324 -3.6549 38 1 -2.1759 8.3414 -3.5956 39 1 3.2637 -1.2686 -0.4252 40 1 0.3753 -2.4872 -0.3436 41 1 1.9235 -3.3948 -0.7679 42 1 2.8724 -2.8479 1.5207 43 1 1.3246 -1.9401 1.9462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230947452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:48 Heat of formation + Delta-G solvation = 50.439069 kcal Electronic energy + Delta-G solvation = -21924.250053 eV Core-core repulsion = 18779.226097 eV Total energy + Delta-G solvation = -3145.023956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15078 -39.59542 -38.67555 -36.44321 -34.28284 -34.04087 -30.39531 -29.84685 -28.56055 -27.23523 -25.38114 -25.09852 -23.55611 -23.16250 -20.94844 -20.44733 -19.05695 -18.69057 -18.11527 -17.15777 -16.96667 -16.50726 -16.31591 -15.80623 -15.47354 -15.26173 -14.58880 -14.28244 -14.14254 -13.85059 -13.73769 -13.60781 -13.37581 -13.20816 -12.93896 -12.66755 -12.54050 -12.44428 -12.37744 -12.31304 -12.10078 -11.79886 -11.78998 -11.58912 -11.30890 -11.26811 -10.83171 -10.44764 -9.89131 -9.44910 -8.87380 -7.87392 -5.22337 0.40889 1.43335 1.46709 1.54910 2.08428 2.35714 2.50044 3.05338 3.31141 3.40338 3.57545 3.90086 3.91458 4.00106 4.07007 4.15887 4.25735 4.30246 4.35365 4.42645 4.49469 4.68126 4.70065 4.78595 4.82558 4.85139 4.86612 4.96968 5.01849 5.03436 5.08859 5.16867 5.19324 5.25346 5.29252 5.53406 5.54840 5.57983 5.63912 5.79013 5.96442 6.59243 6.92014 7.35651 7.62386 8.59499 9.29065 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.003631 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.651638 B = 7709.953584 C = 7888.304686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.231 4.231 4 C 0.531 3.469 5 O -0.576 6.576 6 N -0.608 5.608 7 C 0.074 3.926 8 C 0.132 3.868 9 C 0.136 3.864 10 H 0.062 0.938 11 C -0.130 4.130 12 C 0.149 3.851 13 N -0.629 5.629 14 C -0.228 4.228 15 H 0.086 0.914 16 C -0.073 4.073 17 N -0.956 5.956 18 Si 0.980 3.020 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.267 1.267 22 C -0.141 4.141 23 C -0.173 4.173 24 C -0.158 4.158 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.039 0.961 38 H 0.246 0.754 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 -20.528 8.854 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.002 4.002 3 C -0.252 4.252 4 C 0.324 3.676 5 O -0.458 6.458 6 N -0.340 5.340 7 C -0.067 4.067 8 C 0.007 3.993 9 C 0.029 3.971 10 H 0.080 0.920 11 C -0.168 4.168 12 C 0.024 3.976 13 N -0.356 5.356 14 C -0.356 4.356 15 H 0.104 0.896 16 C -0.265 4.265 17 N -0.606 5.606 18 Si 0.808 3.192 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.191 1.191 22 C -0.158 4.158 23 C -0.210 4.210 24 C -0.195 4.195 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.176 0.824 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.805 -20.237 8.798 25.512 hybrid contribution -0.773 1.475 -0.111 1.668 sum 12.032 -18.762 8.686 23.921 Atomic orbital electron populations 1.21060 0.92255 1.02071 1.02460 1.21990 0.95470 0.93706 0.89017 1.22426 1.01482 0.90083 1.11190 1.19162 0.86640 0.85245 0.76515 1.90769 1.17156 1.87746 1.50178 1.47748 1.11046 1.04809 1.70425 1.22071 0.78088 1.04502 1.02067 1.21314 0.96832 0.84760 0.96397 1.22741 0.93042 0.87186 0.94099 0.92049 1.23460 0.99647 0.95800 0.97896 1.22198 0.98269 0.89055 0.88099 1.46335 1.46076 1.30175 1.13015 1.19419 1.12928 1.02991 1.00285 0.89610 1.25683 0.99936 1.03034 0.97885 1.70045 1.31639 1.42583 1.16311 0.85057 0.76962 0.78990 0.78216 1.21101 1.22335 1.19130 1.21319 1.00683 0.87533 1.06314 1.23175 1.00305 0.97403 1.00079 1.23079 1.04065 1.01078 0.91255 0.91816 0.90792 0.91856 0.82375 0.91020 0.88890 0.90352 0.90410 0.92933 0.91622 0.91190 0.96207 0.94256 0.94462 0.84955 0.88677 0.86657 0.86303 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 7.91 71.24 0.56 -2.52 16 2 C 0.00 0.00 5.81 -17.61 -0.10 -0.10 16 3 C -0.23 -5.20 8.88 23.43 0.21 -4.99 16 4 C 0.53 16.84 7.08 86.57 0.61 17.45 16 5 O -0.58 -23.39 11.23 -4.09 -0.05 -23.43 16 6 N -0.61 -17.85 2.80 -851.06 -2.38 -20.24 16 7 C 0.07 1.35 10.06 127.77 1.29 2.63 16 8 C 0.13 4.98 5.38 86.38 0.46 5.44 16 9 C 0.14 5.77 4.58 45.03 0.21 5.97 16 10 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 11 C -0.13 -5.68 7.27 31.25 0.23 -5.45 16 12 C 0.15 7.87 7.63 86.48 0.66 8.53 16 13 N -0.63 -34.26 3.59 -690.48 -2.48 -36.73 16 14 C -0.23 -13.31 10.52 84.03 0.88 -12.42 16 15 H 0.09 4.71 7.83 -2.91 -0.02 4.68 16 16 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 17 N -0.96 -61.05 11.30 21.65 0.24 -60.81 16 18 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C -0.14 -1.98 6.01 -11.54 -0.07 -2.05 16 23 C -0.17 -2.08 9.77 30.62 0.30 -1.78 16 24 C -0.16 -1.75 10.10 30.62 0.31 -1.44 16 25 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 26 H 0.07 1.46 6.31 -2.39 -0.02 1.44 16 27 H 0.06 1.99 6.11 -2.39 -0.01 1.98 16 28 H 0.16 2.39 6.29 -2.91 -0.02 2.38 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.22 6.35 -2.38 -0.02 1.21 16 31 H 0.08 1.36 8.03 -2.39 -0.02 1.34 16 32 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 33 H 0.05 2.42 7.26 -2.38 -0.02 2.41 16 34 H 0.07 3.18 6.62 -2.39 -0.02 3.16 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.04 2.34 6.95 -2.39 -0.02 2.33 16 38 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.29 6.42 -2.39 -0.02 1.27 16 41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.02 344.07 4.37 -71.66 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.99 Total: 14.46 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.02 Total: 5.37 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -4.62 Total: -117.78 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -76.02 4.37 -71.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.097 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds