Wall clock time and date at job start Tue Mar 31 2020 00:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 C 1.53000 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47065 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99910 * 269.99401 * 5 4 3 7 7 H 1.08004 * 119.99621 * 324.06231 * 6 5 4 8 8 C 1.38807 * 120.00376 * 144.05755 * 6 5 4 9 9 N 1.31625 * 119.99645 * 338.38478 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 158.38059 * 8 6 5 11 11 H 1.48501 * 109.47117 * 90.00122 * 10 8 6 12 12 H 1.48505 * 109.47011 * 210.00126 * 10 8 6 13 13 H 1.48493 * 109.47132 * 330.00078 * 10 8 6 14 14 C 1.46497 * 120.00340 * 89.99814 * 5 4 3 15 15 C 1.50695 * 109.47330 * 83.95458 * 14 5 4 16 16 C 1.38836 * 120.35644 * 264.71741 * 15 14 5 17 17 C 1.38374 * 118.48691 * 180.02562 * 16 15 14 18 18 C 1.38925 * 119.11061 * 359.97438 * 17 16 15 19 19 O 1.35678 * 119.68318 * 180.02562 * 18 17 16 20 20 C 1.42898 * 116.99988 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 18 22 22 N 1.32242 * 120.63222 * 0.02562 * 18 17 16 23 23 C 1.31961 * 121.64639 * 0.02562 * 22 18 17 24 24 H 1.08998 * 109.47005 * 60.00150 * 1 2 3 25 25 H 1.09005 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47082 * 299.99730 * 1 2 3 27 27 H 1.09001 * 109.47082 * 240.00270 * 2 1 3 28 28 H 1.08989 * 109.47503 * 120.00080 * 2 1 3 29 29 H 1.09000 * 109.47513 * 60.00193 * 3 2 1 30 30 H 1.09006 * 109.47026 * 300.00142 * 3 2 1 31 31 H 1.08990 * 109.47366 * 59.99406 * 4 3 2 32 32 H 1.09006 * 109.46725 * 299.99696 * 4 3 2 33 33 H 0.96997 * 119.99658 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47190 * 323.94997 * 14 5 4 35 35 H 1.09004 * 109.47266 * 203.95300 * 14 5 4 36 36 H 1.07999 * 120.75479 * 0.02562 * 16 15 14 37 37 H 1.07993 * 120.44377 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47171 * 299.99944 * 20 19 18 39 39 H 1.08995 * 109.46857 * 60.00081 * 20 19 18 40 40 H 1.09001 * 109.47246 * 59.99668 * 21 20 19 41 41 H 1.09000 * 109.47478 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47192 * 300.00458 * 21 20 19 43 43 H 1.08008 * 119.58409 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2861 3.4700 -1.1857 7 1 4.6748 2.9237 -2.0324 8 6 4.0173 4.8270 -1.2994 9 7 3.1762 5.4033 -0.4670 10 14 4.8495 5.8355 -2.6336 11 1 4.0126 5.8202 -3.8602 12 1 5.0158 7.2349 -2.1652 13 1 6.1816 5.2531 -2.9359 14 6 4.3029 3.5137 1.2689 15 6 5.6757 3.1572 1.7781 16 6 5.8383 2.1285 2.6961 17 6 7.1161 1.8342 3.1381 18 6 8.1867 2.5732 2.6508 19 8 9.4446 2.2942 3.0759 20 6 10.5028 3.0892 2.5373 21 6 11.8372 2.6307 3.1289 22 7 7.9916 3.5461 1.7766 23 6 6.7851 3.8506 1.3374 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8907 32 1 3.9337 0.9286 0.8892 33 1 2.9881 6.3515 -0.5467 34 1 3.5537 3.2078 1.9992 35 1 4.2411 4.5910 1.1146 36 1 4.9868 1.5707 3.0570 37 1 7.2789 1.0401 3.8517 38 1 10.5278 2.9749 1.4537 39 1 10.3343 4.1364 2.7884 40 1 12.0054 1.5835 2.8775 41 1 12.6443 3.2375 2.7184 42 1 11.8125 2.7446 4.2126 43 1 6.6641 4.6515 0.6229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231657587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:23 Heat of formation + Delta-G solvation = -4.369147 kcal Electronic energy + Delta-G solvation = -21736.170900 eV Core-core repulsion = 18588.770281 eV Total energy + Delta-G solvation = -3147.400619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08972 -37.82424 -36.20090 -34.08135 -32.15418 -31.92120 -31.16122 -30.01288 -27.74343 -25.57694 -24.07734 -23.70235 -22.25480 -21.63508 -20.75519 -19.88922 -18.10359 -16.85632 -16.26266 -16.01065 -14.98946 -14.82531 -14.32750 -14.04262 -13.97728 -13.72628 -13.52684 -13.42847 -13.25083 -12.69850 -12.45391 -12.21446 -12.05002 -11.93184 -11.63397 -11.42863 -11.20715 -10.92171 -10.82916 -10.59683 -10.54143 -10.43657 -10.28406 -10.01842 -9.94723 -9.66608 -9.30579 -9.06608 -8.53233 -7.78058 -6.67028 -5.88517 -3.39451 1.73906 1.87787 3.32211 3.35413 3.41123 3.45115 4.32653 4.46770 4.86976 5.04991 5.10927 5.24090 5.32187 5.36234 5.45428 5.49989 5.55964 5.65501 5.67511 5.72795 5.78269 5.85613 5.97772 6.03689 6.06280 6.17790 6.20752 6.36806 6.39675 6.45659 6.54353 6.63701 6.64781 6.78321 7.03032 7.06554 7.09167 7.26656 7.53263 7.70976 7.76602 8.41295 8.46173 9.10955 9.73544 10.31744 11.13930 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.005310 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.361637 B = 5271.564896 C = 6919.853850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.149 3.851 5 N -0.576 5.576 6 C -0.255 4.255 7 H 0.060 0.940 8 C 0.013 3.987 9 N -0.884 5.884 10 Si 0.890 3.110 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.186 3.814 15 C -0.156 4.156 16 C -0.050 4.050 17 C -0.195 4.195 18 C 0.292 3.708 19 O -0.317 6.317 20 C 0.068 3.932 21 C -0.151 4.151 22 N -0.543 5.543 23 C 0.152 3.848 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.256 0.744 34 H 0.034 0.966 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -6.465 6.505 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.173 4.173 4 C 0.023 3.977 5 N -0.295 5.295 6 C -0.385 4.385 7 H 0.078 0.922 8 C -0.188 4.188 9 N -0.526 5.526 10 Si 0.719 3.281 11 H -0.212 1.212 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.059 3.941 15 C -0.161 4.161 16 C -0.077 4.077 17 C -0.216 4.216 18 C 0.113 3.887 19 O -0.225 6.225 20 C -0.008 4.008 21 C -0.209 4.209 22 N -0.266 5.266 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.677 -6.012 6.369 11.013 hybrid contribution -0.272 0.268 -0.587 0.701 sum 6.405 -5.744 5.781 10.365 Atomic orbital electron populations 1.21760 0.96790 1.00386 1.01683 1.21531 0.95103 0.98648 1.00855 1.22145 0.99009 0.93920 1.02193 1.20911 0.91438 0.87191 0.98175 1.43788 1.73647 1.10252 1.01784 1.19046 1.36773 0.92019 0.90671 0.92197 1.25107 0.96974 0.98766 0.97913 1.70001 1.32202 1.11249 1.39127 0.86501 0.80031 0.79703 0.81868 1.21187 1.21314 1.20187 1.19841 0.86358 1.01544 0.86335 1.22168 1.01212 0.96385 0.96318 1.21325 0.95721 0.95629 0.94979 1.20901 0.91317 1.03575 1.05764 1.19659 0.84862 0.91947 0.92223 1.86153 1.12830 1.58104 1.65436 1.22461 0.85011 0.94833 0.98466 1.21804 0.94930 1.02330 1.01795 1.67292 1.27572 1.17747 1.14022 1.22332 0.85436 0.97515 0.95136 0.92934 0.93740 0.93101 0.92750 0.92989 0.92988 0.91815 0.94109 0.94989 0.93398 0.94747 0.87640 0.85142 0.85344 0.91939 0.91988 0.91891 0.90661 0.91928 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.13 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.15 3.01 5.68 -4.04 -0.02 2.99 16 5 N -0.58 -13.44 2.42 -174.62 -0.42 -13.87 16 6 C -0.26 -6.60 9.47 -15.06 -0.14 -6.74 16 7 H 0.06 1.58 7.92 -52.48 -0.42 1.17 16 8 C 0.01 0.33 4.90 -17.43 -0.09 0.25 16 9 N -0.88 -23.89 11.46 55.49 0.64 -23.26 16 10 Si 0.89 20.72 29.61 -169.99 -5.03 15.69 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.19 4.09 5.37 -5.20 -0.03 4.06 16 15 C -0.16 -3.09 5.47 -104.47 -0.57 -3.66 16 16 C -0.05 -0.86 9.77 -39.31 -0.38 -1.24 16 17 C -0.19 -3.24 10.04 -39.28 -0.39 -3.63 16 18 C 0.29 5.29 7.49 -17.12 -0.13 5.16 16 19 O -0.32 -5.18 10.12 -18.74 -0.19 -5.37 16 20 C 0.07 0.92 6.03 37.16 0.22 1.15 16 21 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 22 N -0.54 -10.62 9.22 -13.33 -0.12 -10.75 16 23 C 0.15 3.09 10.87 -17.57 -0.19 2.90 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.73 8.14 -51.94 -0.42 0.30 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.04 0.83 8.04 -51.93 -0.42 0.42 16 32 H 0.03 0.59 8.01 -51.93 -0.42 0.18 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.03 0.72 8.03 -51.93 -0.42 0.31 16 35 H 0.11 2.62 5.47 -51.93 -0.28 2.33 16 36 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.16 3.29 8.06 -52.48 -0.42 2.87 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -27.69 358.50 -8.43 -36.12 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.42 Total: 2.20 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.28 Total: -6.18 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.09 Total: -47.87 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.19 Total: -5.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.69 -8.43 -36.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231657587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.753 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds