Wall clock time and date at job start Tue Mar 31 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 C 1.53000 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47065 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99910 * 269.99401 * 5 4 3 7 7 H 1.08004 * 119.99621 * 324.06231 * 6 5 4 8 8 C 1.38807 * 120.00376 * 144.05755 * 6 5 4 9 9 N 1.31625 * 119.99645 * 338.38478 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 158.38059 * 8 6 5 11 11 H 1.48501 * 109.47117 * 90.00122 * 10 8 6 12 12 H 1.48505 * 109.47011 * 210.00126 * 10 8 6 13 13 H 1.48493 * 109.47132 * 330.00078 * 10 8 6 14 14 C 1.46497 * 120.00340 * 89.99814 * 5 4 3 15 15 C 1.50695 * 109.47330 * 83.95458 * 14 5 4 16 16 C 1.38836 * 120.35644 * 264.71741 * 15 14 5 17 17 C 1.38374 * 118.48691 * 180.02562 * 16 15 14 18 18 C 1.38925 * 119.11061 * 359.97438 * 17 16 15 19 19 O 1.35678 * 119.68318 * 180.02562 * 18 17 16 20 20 C 1.42898 * 116.99988 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 18 22 22 N 1.32242 * 120.63222 * 0.02562 * 18 17 16 23 23 C 1.31961 * 121.64639 * 0.02562 * 22 18 17 24 24 H 1.08998 * 109.47005 * 60.00150 * 1 2 3 25 25 H 1.09005 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47082 * 299.99730 * 1 2 3 27 27 H 1.09001 * 109.47082 * 240.00270 * 2 1 3 28 28 H 1.08989 * 109.47503 * 120.00080 * 2 1 3 29 29 H 1.09000 * 109.47513 * 60.00193 * 3 2 1 30 30 H 1.09006 * 109.47026 * 300.00142 * 3 2 1 31 31 H 1.08990 * 109.47366 * 59.99406 * 4 3 2 32 32 H 1.09006 * 109.46725 * 299.99696 * 4 3 2 33 33 H 0.96997 * 119.99658 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47190 * 323.94997 * 14 5 4 35 35 H 1.09004 * 109.47266 * 203.95300 * 14 5 4 36 36 H 1.07999 * 120.75479 * 0.02562 * 16 15 14 37 37 H 1.07993 * 120.44377 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47171 * 299.99944 * 20 19 18 39 39 H 1.08995 * 109.46857 * 60.00081 * 20 19 18 40 40 H 1.09001 * 109.47246 * 59.99668 * 21 20 19 41 41 H 1.09000 * 109.47478 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47192 * 300.00458 * 21 20 19 43 43 H 1.08008 * 119.58409 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2861 3.4700 -1.1857 7 1 4.6748 2.9237 -2.0324 8 6 4.0173 4.8270 -1.2994 9 7 3.1762 5.4033 -0.4670 10 14 4.8495 5.8355 -2.6336 11 1 4.0126 5.8202 -3.8602 12 1 5.0158 7.2349 -2.1652 13 1 6.1816 5.2531 -2.9359 14 6 4.3029 3.5137 1.2689 15 6 5.6757 3.1572 1.7781 16 6 5.8383 2.1285 2.6961 17 6 7.1161 1.8342 3.1381 18 6 8.1867 2.5732 2.6508 19 8 9.4446 2.2942 3.0759 20 6 10.5028 3.0892 2.5373 21 6 11.8372 2.6307 3.1289 22 7 7.9916 3.5461 1.7766 23 6 6.7851 3.8506 1.3374 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8907 32 1 3.9337 0.9286 0.8892 33 1 2.9881 6.3515 -0.5467 34 1 3.5537 3.2078 1.9992 35 1 4.2411 4.5910 1.1146 36 1 4.9868 1.5707 3.0570 37 1 7.2789 1.0401 3.8517 38 1 10.5278 2.9749 1.4537 39 1 10.3343 4.1364 2.7884 40 1 12.0054 1.5835 2.8775 41 1 12.6443 3.2375 2.7184 42 1 11.8125 2.7446 4.2126 43 1 6.6641 4.6515 0.6229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231657587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:21 Heat of formation + Delta-G solvation = -18.929896 kcal Electronic energy + Delta-G solvation = -21736.802301 eV Core-core repulsion = 18588.770281 eV Total energy + Delta-G solvation = -3148.032020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.50177 -39.20252 -37.82322 -35.54976 -33.78052 -33.15856 -32.74298 -31.35140 -29.27478 -27.32440 -25.52681 -25.13254 -23.59486 -22.94936 -22.21516 -21.49277 -19.42004 -18.72483 -17.72597 -17.22597 -16.80188 -16.26896 -15.88213 -15.62661 -15.40835 -15.28699 -14.89681 -14.71017 -14.56941 -14.06809 -13.68905 -13.43962 -13.34184 -13.27647 -13.13017 -12.94962 -12.64433 -12.60319 -12.40075 -12.19453 -11.92766 -11.83762 -11.81308 -11.64706 -11.52046 -11.22505 -10.72432 -10.63587 -10.40679 -9.24968 -8.56961 -7.85781 -5.39622 0.29160 0.43156 1.42976 1.48049 1.55705 2.12369 2.50367 2.87157 3.25577 3.43807 3.80616 4.08229 4.08797 4.17767 4.20084 4.20890 4.24055 4.33568 4.43433 4.47688 4.49544 4.60964 4.70774 4.89180 4.90407 4.95467 5.00184 5.04284 5.09695 5.12642 5.18521 5.21918 5.22440 5.42053 5.49800 5.56687 5.59580 5.65324 5.71347 5.81444 6.33466 6.48120 6.95955 7.17237 7.86451 8.38511 9.13328 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.005310 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.361637 B = 5271.564896 C = 6919.853850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.121 4.121 4 C 0.147 3.853 5 N -0.590 5.590 6 C -0.260 4.260 7 H 0.048 0.952 8 C -0.024 4.024 9 N -0.909 5.909 10 Si 0.941 3.059 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.196 3.804 15 C -0.167 4.167 16 C -0.040 4.040 17 C -0.184 4.184 18 C 0.285 3.715 19 O -0.317 6.317 20 C 0.061 3.939 21 C -0.142 4.142 22 N -0.557 5.557 23 C 0.135 3.865 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.252 0.748 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -8.588 7.905 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.161 4.161 4 C 0.022 3.978 5 N -0.310 5.310 6 C -0.391 4.391 7 H 0.066 0.934 8 C -0.222 4.222 9 N -0.552 5.552 10 Si 0.769 3.231 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.069 3.931 15 C -0.172 4.172 16 C -0.066 4.066 17 C -0.204 4.204 18 C 0.105 3.895 19 O -0.225 6.225 20 C -0.014 4.014 21 C -0.199 4.199 22 N -0.281 5.281 23 C -0.020 4.020 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.556 -8.150 7.774 13.563 hybrid contribution -0.444 0.869 -0.955 1.366 sum 7.112 -7.280 6.819 12.251 Atomic orbital electron populations 1.21742 0.95574 1.01882 1.01266 1.21466 0.96157 0.95739 1.02020 1.21966 0.98006 0.96262 0.99831 1.21018 0.92208 0.85679 0.98902 1.43968 1.74372 1.11207 1.01448 1.19124 1.36152 0.92394 0.91418 0.93385 1.25581 0.97564 0.99469 0.99618 1.70097 1.33506 1.11045 1.40600 0.85708 0.79044 0.78380 0.79947 1.21149 1.21455 1.20274 1.19588 0.87896 0.99608 0.86015 1.21902 0.99526 0.97860 0.97930 1.21578 0.97141 0.94374 0.93473 1.21268 0.90330 1.03508 1.05317 1.20060 0.86159 0.91560 0.91707 1.86176 1.12574 1.58449 1.65329 1.22711 0.85931 0.94568 0.98220 1.21804 0.93074 1.02945 1.02112 1.67227 1.27091 1.18832 1.14956 1.22075 0.86291 0.97879 0.95783 0.93886 0.91249 0.93089 0.92255 0.91063 0.94145 0.95327 0.94696 0.92716 0.93814 0.94056 0.90840 0.82213 0.81833 0.92987 0.92604 0.91401 0.88434 0.91217 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.12 -3.24 5.93 30.60 0.18 -3.06 16 3 C -0.12 -4.51 5.54 30.59 0.17 -4.34 16 4 C 0.15 5.86 5.68 86.38 0.49 6.35 16 5 N -0.59 -27.96 2.42 -706.37 -1.71 -29.67 16 6 C -0.26 -13.84 9.47 84.03 0.80 -13.05 16 7 H 0.05 2.62 7.92 -2.91 -0.02 2.60 16 8 C -0.02 -1.30 4.90 84.86 0.42 -0.89 16 9 N -0.91 -50.84 11.46 21.65 0.25 -50.59 16 10 Si 0.94 43.92 29.61 68.60 2.03 45.95 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.20 8.72 5.37 85.63 0.46 9.18 16 15 C -0.17 -6.58 5.47 -19.77 -0.11 -6.69 16 16 C -0.04 -1.26 9.77 22.45 0.22 -1.04 16 17 C -0.18 -5.53 10.04 22.47 0.23 -5.31 16 18 C 0.28 9.85 7.49 84.80 0.63 10.48 16 19 O -0.32 -9.74 10.12 -89.96 -0.91 -10.65 16 20 C 0.06 1.58 6.03 71.98 0.43 2.01 16 21 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 22 N -0.56 -21.78 9.22 -308.95 -2.85 -24.62 16 23 C 0.13 5.62 10.87 84.63 0.92 6.54 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 32 H 0.05 1.91 8.01 -2.38 -0.02 1.89 16 33 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 34 H 0.04 1.73 8.03 -2.39 -0.02 1.72 16 35 H 0.07 3.80 5.47 -2.38 -0.01 3.78 16 36 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.14 6.06 8.06 -2.91 -0.02 6.03 16 Total: -1.00 -60.99 358.50 4.06 -56.93 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.95 Total: 17.15 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 6.29 Total: -4.50 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.31 Total: -104.89 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.91 Total: -10.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.99 4.06 -56.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231657587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.002 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds