Wall clock time and date at job start Tue Mar 31 2020 00:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.53006 * 109.46903 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46953 * 179.97438 * 4 3 2 6 6 C 1.36926 * 120.00341 * 268.83524 * 5 4 3 7 7 H 1.08007 * 119.99783 * 318.27261 * 6 5 4 8 8 C 1.38811 * 120.00435 * 138.27140 * 6 5 4 9 9 N 1.31625 * 120.00259 * 164.21943 * 8 6 5 10 10 Si 1.86794 * 119.99853 * 344.21948 * 8 6 5 11 11 H 1.48498 * 109.47130 * 95.51859 * 10 8 6 12 12 H 1.48502 * 109.47116 * 215.51816 * 10 8 6 13 13 H 1.48501 * 109.47133 * 335.51992 * 10 8 6 14 14 C 1.46508 * 119.99639 * 88.83153 * 5 4 3 15 15 C 1.50698 * 109.46850 * 90.00230 * 14 5 4 16 16 C 1.38425 * 120.44265 * 260.24709 * 15 14 5 17 17 C 1.38787 * 118.48401 * 180.24442 * 16 15 14 18 18 C 1.38081 * 119.28878 * 359.75192 * 17 16 15 19 19 N 1.31939 * 120.83482 * 0.02562 * 18 17 16 20 20 C 1.32275 * 121.64683 * 359.97438 * 19 18 17 21 21 O 1.35678 * 119.68393 * 179.97438 * 20 19 18 22 22 C 1.42896 * 116.99922 * 0.02562 * 21 20 19 23 23 C 1.52998 * 109.46951 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46791 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47633 * 59.99381 * 1 2 3 27 27 H 1.09004 * 109.46405 * 240.00036 * 2 1 3 28 28 H 1.09000 * 109.46894 * 120.00583 * 2 1 3 29 29 H 1.08998 * 109.46732 * 60.00431 * 3 2 1 30 30 H 1.08999 * 109.46901 * 300.00158 * 3 2 1 31 31 H 1.08996 * 109.47165 * 59.99966 * 4 3 2 32 32 H 1.09000 * 109.46796 * 300.00303 * 4 3 2 33 33 H 0.97000 * 120.00094 * 180.02562 * 9 8 6 34 34 H 1.08991 * 109.47053 * 329.99972 * 14 5 4 35 35 H 1.08999 * 109.46618 * 209.99799 * 14 5 4 36 36 H 1.07998 * 120.75752 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.35563 * 179.73193 * 17 16 15 38 38 H 1.08003 * 119.58565 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.46907 * 299.99188 * 22 21 20 40 40 H 1.08997 * 109.47425 * 59.99847 * 22 21 20 41 41 H 1.08997 * 109.47386 * 60.00174 * 23 22 21 42 42 H 1.09008 * 109.47173 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47585 * 299.99608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.3089 3.4607 -1.1871 7 1 4.7996 2.9321 -1.9910 8 6 3.9323 4.7860 -1.3561 9 7 4.4330 5.4912 -2.3483 10 14 2.7149 5.5688 -0.1753 11 1 3.4540 6.2958 0.8879 12 1 1.8492 6.5212 -0.9161 13 1 1.8735 4.5117 0.4411 14 6 4.2788 3.5231 1.2670 15 6 5.6936 3.2895 1.7303 16 6 5.9666 2.3380 2.6979 17 6 7.2836 2.1600 3.0982 18 6 8.2750 2.9278 2.5200 19 7 7.9842 3.8240 1.5965 20 6 6.7415 4.0226 1.1890 21 8 6.4876 4.9554 0.2370 22 6 7.6071 5.6799 -0.2763 23 6 7.1279 6.6784 -1.3319 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 4.1701 6.4174 -2.4662 34 1 3.5838 3.1444 2.0163 35 1 4.1144 4.5914 1.1259 36 1 5.1725 1.7506 3.1346 37 1 7.5303 1.4291 3.8540 38 1 9.3015 2.7929 2.8276 39 1 8.0961 6.2168 0.5366 40 1 8.3136 4.9842 -0.7291 41 1 6.4213 7.3742 -0.8796 42 1 7.9820 7.2308 -1.7238 43 1 6.6391 6.1413 -2.1448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231768873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:27 Heat of formation + Delta-G solvation = 10.970218 kcal Electronic energy + Delta-G solvation = -22963.197551 eV Core-core repulsion = 19816.462097 eV Total energy + Delta-G solvation = -3146.735454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.00685 -37.16305 -36.55669 -34.22956 -32.26410 -31.49504 -31.01401 -29.56076 -28.14911 -25.75350 -24.04149 -23.38149 -21.98164 -21.39264 -20.94062 -19.86460 -17.72186 -16.82050 -16.30013 -15.52465 -15.15734 -14.97366 -14.75896 -14.14987 -13.85294 -13.44133 -13.20412 -13.05269 -12.86619 -12.64476 -12.35803 -12.09653 -11.91278 -11.76001 -11.54101 -11.45504 -11.18350 -10.85973 -10.68036 -10.61270 -10.45804 -10.31533 -9.99224 -9.83978 -9.78538 -9.55987 -9.17169 -9.04265 -8.37731 -7.67106 -6.71092 -5.86821 -3.33298 1.72329 1.86666 3.39267 3.51072 3.54961 3.91742 4.33884 4.62625 4.86124 5.09727 5.27245 5.36357 5.38273 5.49750 5.55597 5.59514 5.68703 5.70570 5.82289 5.91891 5.95367 6.04906 6.08595 6.12696 6.19846 6.28441 6.33086 6.33566 6.40187 6.51135 6.54250 6.59053 6.66205 6.71799 6.85084 6.93588 7.03448 7.11329 7.32504 8.14444 8.19370 8.48135 8.51218 9.05397 9.82339 10.20617 11.27930 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.008207 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.019197 B = 3411.033250 C = 4856.647076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.153 3.847 5 N -0.596 5.596 6 C -0.256 4.256 7 H 0.072 0.928 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.287 1.287 12 H -0.306 1.306 13 H -0.268 1.268 14 C 0.182 3.818 15 C -0.155 4.155 16 C -0.051 4.051 17 C -0.226 4.226 18 C 0.119 3.881 19 N -0.552 5.552 20 C 0.344 3.656 21 O -0.254 6.254 22 C 0.077 3.923 23 C -0.157 4.157 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.146 0.854 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -5.616 8.367 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.028 3.972 5 N -0.316 5.316 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.703 3.297 11 H -0.215 1.215 12 H -0.234 1.234 13 H -0.193 1.193 14 C 0.056 3.944 15 C -0.161 4.161 16 C -0.077 4.077 17 C -0.247 4.247 18 C -0.037 4.037 19 N -0.277 5.277 20 C 0.164 3.836 21 O -0.159 6.159 22 C 0.001 3.999 23 C -0.214 4.214 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.038 -4.847 7.703 9.326 hybrid contribution -0.943 0.085 1.121 1.468 sum 1.095 -4.762 8.824 10.087 Atomic orbital electron populations 1.21769 0.96745 1.00583 1.01631 1.21501 0.95108 0.98211 1.01173 1.22218 0.99152 0.94607 1.01935 1.20897 0.91120 0.86357 0.98855 1.44132 1.74510 1.11520 1.01452 1.18611 1.33322 0.95425 0.91080 0.91006 1.25258 0.96649 0.96774 0.95288 1.69720 1.43265 1.08387 1.32125 0.86999 0.82757 0.78913 0.81031 1.21466 1.23438 1.19331 1.20071 0.88169 0.97782 0.88421 1.20956 0.99270 0.97927 0.97988 1.21200 0.96491 0.95347 0.94707 1.21739 0.93957 1.04192 1.04770 1.22145 0.99052 0.91007 0.91507 1.67367 1.20900 1.22528 1.16917 1.19826 0.88183 0.88181 0.87429 1.86693 1.33710 1.46454 1.48995 1.22396 0.87853 0.93682 0.95923 1.21905 1.00708 0.98352 1.00412 0.93538 0.93214 0.92863 0.92369 0.92833 0.93285 0.91645 0.93124 0.94806 0.93089 0.93490 0.91832 0.85365 0.85763 0.83651 0.93817 0.92801 0.93045 0.92576 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.64 16 4 C 0.15 3.00 5.67 -4.04 -0.02 2.98 16 5 N -0.60 -13.80 2.02 -174.61 -0.35 -14.15 16 6 C -0.26 -6.86 9.02 -15.06 -0.14 -7.00 16 7 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 8 C 0.06 1.67 4.54 -17.43 -0.08 1.59 16 9 N -0.89 -25.10 12.07 55.49 0.67 -24.43 16 10 Si 0.87 22.04 24.79 -169.99 -4.21 17.83 16 11 H -0.29 -7.28 6.78 56.52 0.38 -6.90 16 12 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.27 -6.60 7.07 56.52 0.40 -6.20 16 14 C 0.18 3.98 4.25 -5.19 -0.02 3.96 16 15 C -0.16 -3.19 5.49 -104.32 -0.57 -3.76 16 16 C -0.05 -0.85 9.81 -39.31 -0.39 -1.24 16 17 C -0.23 -3.34 10.11 -39.44 -0.40 -3.74 16 18 C 0.12 1.90 11.18 -17.56 -0.20 1.70 16 19 N -0.55 -10.86 9.22 -13.33 -0.12 -10.99 16 20 C 0.34 7.52 7.47 -17.12 -0.13 7.39 16 21 O -0.25 -6.00 7.56 -18.74 -0.14 -6.15 16 22 C 0.08 1.58 6.03 37.16 0.22 1.80 16 23 C -0.16 -3.09 10.17 37.16 0.38 -2.71 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 32 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.05 0.92 7.96 -51.93 -0.41 0.50 16 35 H 0.06 1.55 3.06 -51.93 -0.16 1.40 16 36 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.04 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 43 H 0.11 2.47 6.28 -51.93 -0.33 2.15 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -29.19 345.18 -7.47 -36.65 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.23 Total: 1.14 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.28 Total: -5.12 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.19 Total: -49.56 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.14 Total: -6.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.21 Total: 17.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.19 -7.47 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231768873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.623 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds