Wall clock time and date at job start Tue Mar 31 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.53006 * 109.46903 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46953 * 179.97438 * 4 3 2 6 6 C 1.36926 * 120.00341 * 268.83524 * 5 4 3 7 7 H 1.08007 * 119.99783 * 318.27261 * 6 5 4 8 8 C 1.38811 * 120.00435 * 138.27140 * 6 5 4 9 9 N 1.31625 * 120.00259 * 164.21943 * 8 6 5 10 10 Si 1.86794 * 119.99853 * 344.21948 * 8 6 5 11 11 H 1.48498 * 109.47130 * 95.51859 * 10 8 6 12 12 H 1.48502 * 109.47116 * 215.51816 * 10 8 6 13 13 H 1.48501 * 109.47133 * 335.51992 * 10 8 6 14 14 C 1.46508 * 119.99639 * 88.83153 * 5 4 3 15 15 C 1.50698 * 109.46850 * 90.00230 * 14 5 4 16 16 C 1.38425 * 120.44265 * 260.24709 * 15 14 5 17 17 C 1.38787 * 118.48401 * 180.24442 * 16 15 14 18 18 C 1.38081 * 119.28878 * 359.75192 * 17 16 15 19 19 N 1.31939 * 120.83482 * 0.02562 * 18 17 16 20 20 C 1.32275 * 121.64683 * 359.97438 * 19 18 17 21 21 O 1.35678 * 119.68393 * 179.97438 * 20 19 18 22 22 C 1.42896 * 116.99922 * 0.02562 * 21 20 19 23 23 C 1.52998 * 109.46951 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46791 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47633 * 59.99381 * 1 2 3 27 27 H 1.09004 * 109.46405 * 240.00036 * 2 1 3 28 28 H 1.09000 * 109.46894 * 120.00583 * 2 1 3 29 29 H 1.08998 * 109.46732 * 60.00431 * 3 2 1 30 30 H 1.08999 * 109.46901 * 300.00158 * 3 2 1 31 31 H 1.08996 * 109.47165 * 59.99966 * 4 3 2 32 32 H 1.09000 * 109.46796 * 300.00303 * 4 3 2 33 33 H 0.97000 * 120.00094 * 180.02562 * 9 8 6 34 34 H 1.08991 * 109.47053 * 329.99972 * 14 5 4 35 35 H 1.08999 * 109.46618 * 209.99799 * 14 5 4 36 36 H 1.07998 * 120.75752 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.35563 * 179.73193 * 17 16 15 38 38 H 1.08003 * 119.58565 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.46907 * 299.99188 * 22 21 20 40 40 H 1.08997 * 109.47425 * 59.99847 * 22 21 20 41 41 H 1.08997 * 109.47386 * 60.00174 * 23 22 21 42 42 H 1.09008 * 109.47173 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47585 * 299.99608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.3089 3.4607 -1.1871 7 1 4.7996 2.9321 -1.9910 8 6 3.9323 4.7860 -1.3561 9 7 4.4330 5.4912 -2.3483 10 14 2.7149 5.5688 -0.1753 11 1 3.4540 6.2958 0.8879 12 1 1.8492 6.5212 -0.9161 13 1 1.8735 4.5117 0.4411 14 6 4.2788 3.5231 1.2670 15 6 5.6936 3.2895 1.7303 16 6 5.9666 2.3380 2.6979 17 6 7.2836 2.1600 3.0982 18 6 8.2750 2.9278 2.5200 19 7 7.9842 3.8240 1.5965 20 6 6.7415 4.0226 1.1890 21 8 6.4876 4.9554 0.2370 22 6 7.6071 5.6799 -0.2763 23 6 7.1279 6.6784 -1.3319 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 4.1701 6.4174 -2.4662 34 1 3.5838 3.1444 2.0163 35 1 4.1144 4.5914 1.1259 36 1 5.1725 1.7506 3.1346 37 1 7.5303 1.4291 3.8540 38 1 9.3015 2.7929 2.8276 39 1 8.0961 6.2168 0.5366 40 1 8.3136 4.9842 -0.7291 41 1 6.4213 7.3742 -0.8796 42 1 7.9820 7.2308 -1.7238 43 1 6.6391 6.1413 -2.1448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231768873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:26 Heat of formation + Delta-G solvation = -6.826758 kcal Electronic energy + Delta-G solvation = -22963.969286 eV Core-core repulsion = 19816.462097 eV Total energy + Delta-G solvation = -3147.507189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44345 -38.69867 -38.19024 -35.59870 -34.01313 -33.05415 -32.63980 -31.02949 -29.60997 -27.42853 -25.65181 -24.87711 -23.42662 -22.89549 -22.32228 -21.44899 -19.23297 -18.72928 -17.81376 -17.16417 -16.86407 -16.33609 -16.15405 -15.77255 -15.35840 -14.91202 -14.71795 -14.58704 -14.47361 -14.15817 -13.93099 -13.53948 -13.36114 -13.24467 -13.12286 -13.00499 -12.76216 -12.58826 -12.17027 -12.15224 -11.86278 -11.78628 -11.70404 -11.53298 -11.44905 -11.25269 -10.61971 -10.46680 -10.38092 -9.12505 -8.57289 -7.97818 -5.41239 0.36868 0.52313 1.35243 1.41913 1.50553 2.43881 2.54745 2.93084 3.35378 3.52469 3.55467 4.01617 4.17637 4.19250 4.21117 4.21404 4.29727 4.36139 4.43754 4.45690 4.49683 4.57467 4.63189 4.79451 4.87439 4.90763 5.00209 5.03099 5.07340 5.07649 5.10946 5.20268 5.27179 5.40532 5.45379 5.52404 5.59689 5.64488 5.78485 6.14391 6.34334 6.67293 7.08796 7.15657 7.79444 8.21561 9.19392 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.008207 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.019197 B = 3411.033250 C = 4856.647076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.152 3.848 5 N -0.607 5.607 6 C -0.241 4.241 7 H 0.027 0.973 8 C 0.027 3.973 9 N -0.922 5.922 10 Si 0.921 3.079 11 H -0.292 1.292 12 H -0.318 1.318 13 H -0.256 1.256 14 C 0.184 3.816 15 C -0.186 4.186 16 C -0.042 4.042 17 C -0.207 4.207 18 C 0.114 3.886 19 N -0.570 5.570 20 C 0.308 3.692 21 O -0.290 6.290 22 C 0.080 3.920 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.185 0.815 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.091 0.909 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -7.919 11.610 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.170 4.170 4 C 0.028 3.972 5 N -0.328 5.328 6 C -0.371 4.371 7 H 0.044 0.956 8 C -0.171 4.171 9 N -0.565 5.565 10 Si 0.753 3.247 11 H -0.220 1.220 12 H -0.247 1.247 13 H -0.180 1.180 14 C 0.058 3.942 15 C -0.191 4.191 16 C -0.068 4.068 17 C -0.227 4.227 18 C -0.041 4.041 19 N -0.296 5.296 20 C 0.129 3.871 21 O -0.196 6.196 22 C 0.004 3.996 23 C -0.203 4.203 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.202 0.798 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.336 -7.184 10.977 13.325 hybrid contribution -0.864 0.675 0.218 1.118 sum 1.472 -6.509 11.195 13.033 Atomic orbital electron populations 1.21756 0.95546 1.01984 1.01328 1.21445 0.96129 0.95487 1.02244 1.22081 0.97743 0.96975 1.00246 1.21003 0.92215 0.84525 0.99485 1.44206 1.75268 1.12567 1.00801 1.18240 1.32017 0.95211 0.91651 0.95566 1.25582 0.97904 0.97171 0.96475 1.69840 1.44560 1.08378 1.33770 0.86212 0.81021 0.78129 0.79386 1.22023 1.24747 1.17990 1.19969 0.90120 0.95939 0.88131 1.20957 0.97849 1.00012 1.00305 1.21625 0.98506 0.93775 0.92930 1.22242 0.92563 1.03610 1.04242 1.22964 1.01441 0.89683 0.90062 1.67370 1.20061 1.23946 1.18199 1.20116 0.89556 0.89117 0.88264 1.86631 1.35072 1.47605 1.50259 1.22413 0.87411 0.93487 0.96250 1.21803 1.01529 0.97896 0.99066 0.91280 0.92886 0.93884 0.92303 0.90720 0.93422 0.94836 0.94544 0.91960 0.93529 0.90918 0.94857 0.82109 0.80989 0.79816 0.92436 0.93459 0.94146 0.89017 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.11 -2.99 5.93 30.59 0.18 -2.81 16 3 C -0.13 -4.54 5.54 30.60 0.17 -4.37 16 4 C 0.15 5.83 5.67 86.38 0.49 6.32 16 5 N -0.61 -28.30 2.02 -706.34 -1.42 -29.72 16 6 C -0.24 -13.54 9.02 84.03 0.76 -12.78 16 7 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 8 C 0.03 1.53 4.54 84.86 0.39 1.92 16 9 N -0.92 -54.72 12.07 21.65 0.26 -54.45 16 10 Si 0.92 47.18 24.79 68.60 1.70 48.88 16 11 H -0.29 -15.04 6.78 99.48 0.67 -14.37 16 12 H -0.32 -16.68 7.11 99.48 0.71 -15.97 16 13 H -0.26 -12.36 7.07 99.48 0.70 -11.66 16 14 C 0.18 7.92 4.25 85.63 0.36 8.29 16 15 C -0.19 -7.36 5.49 -19.67 -0.11 -7.47 16 16 C -0.04 -1.24 9.81 22.45 0.22 -1.02 16 17 C -0.21 -5.03 10.11 22.36 0.23 -4.80 16 18 C 0.11 3.22 11.18 84.64 0.95 4.17 16 19 N -0.57 -21.72 9.22 -308.94 -2.85 -24.56 16 20 C 0.31 13.47 7.47 84.78 0.63 14.10 16 21 O -0.29 -14.18 7.56 -89.96 -0.68 -14.86 16 22 C 0.08 3.37 6.03 71.98 0.43 3.80 16 23 C -0.15 -5.99 10.17 71.98 0.73 -5.26 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.47 8.03 -2.39 -0.02 1.45 16 32 H 0.06 2.01 8.08 -2.39 -0.02 2.00 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 35 H 0.03 1.65 3.06 -2.39 -0.01 1.64 16 36 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.06 2.19 8.10 -2.39 -0.02 2.18 16 40 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 43 H 0.07 3.51 6.28 -2.39 -0.01 3.49 16 Total: -1.00 -68.45 345.18 4.08 -64.37 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.93 Total: 12.99 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.14 Total: -2.65 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.01 Total: -108.74 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.68 Total: -14.86 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.70 Total: 48.88 kcal Total: -68.45 4.08 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231768873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.542 kcal (2) G-P(sol) polarization free energy of solvation -68.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds