Wall clock time and date at job start Tue Mar 31 2020 01:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47185 * 2 1 4 4 N 1.46913 * 109.46999 * 179.72424 * 3 2 1 5 5 C 1.46896 * 110.99711 * 297.90007 * 4 3 2 6 6 C 1.50697 * 109.47342 * 293.10014 * 5 4 3 7 7 H 1.08005 * 120.00157 * 354.97799 * 6 5 4 8 8 C 1.37874 * 120.00485 * 174.98554 * 6 5 4 9 9 N 1.31520 * 119.99564 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00474 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46971 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47073 * 119.99929 * 10 8 6 13 13 H 1.48503 * 109.47061 * 239.99956 * 10 8 6 14 14 C 1.46902 * 110.99559 * 61.85261 * 4 3 2 15 15 C 1.50700 * 109.47177 * 66.04920 * 14 4 3 16 16 C 1.38227 * 119.61898 * 95.01358 * 15 14 4 17 17 C 1.38632 * 119.16163 * 179.97438 * 16 15 14 18 18 C 1.38663 * 118.41960 * 359.75143 * 17 16 15 19 19 C 1.38194 * 119.16314 * 0.49659 * 18 17 16 20 20 C 1.50700 * 119.61712 * 179.77107 * 19 18 17 21 21 O 1.42900 * 109.47080 * 359.72472 * 20 19 18 22 22 C 1.42898 * 114.00080 * 180.02562 * 21 20 19 23 23 N 1.31855 * 119.61671 * 274.99501 * 15 14 4 24 24 H 1.09004 * 109.46492 * 299.99725 * 1 2 3 25 25 H 1.09005 * 109.46993 * 59.99299 * 1 2 3 26 26 H 1.08992 * 109.47552 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46492 * 240.00275 * 2 1 3 28 28 H 1.08999 * 109.47255 * 120.00335 * 2 1 3 29 29 H 1.09000 * 109.47283 * 59.72661 * 3 2 1 30 30 H 1.09004 * 109.47625 * 299.72076 * 3 2 1 31 31 H 1.08995 * 109.47560 * 53.09839 * 5 4 3 32 32 H 1.08999 * 109.46966 * 173.10044 * 5 4 3 33 33 H 0.97000 * 119.99703 * 179.97438 * 9 8 6 34 34 H 1.08991 * 109.47184 * 306.04830 * 14 4 3 35 35 H 1.09003 * 109.46510 * 186.04706 * 14 4 3 36 36 H 1.08001 * 120.42044 * 359.96243 * 16 15 14 37 37 H 1.08002 * 120.78976 * 180.02562 * 17 16 15 38 38 H 1.08002 * 120.41959 * 180.24425 * 18 17 16 39 39 H 1.08996 * 109.46773 * 239.72495 * 20 19 18 40 40 H 1.09002 * 109.46774 * 119.72442 * 20 19 18 41 41 H 1.08998 * 109.46942 * 59.99945 * 22 21 20 42 42 H 1.09003 * 109.46834 * 300.00011 * 22 21 20 43 43 H 1.08998 * 109.47211 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0067 5 6 4.0300 0.8026 1.2221 6 6 3.6842 1.6466 2.4217 7 1 3.2046 2.6050 2.2876 8 6 3.9801 1.1954 3.6905 9 7 4.5637 0.0282 3.8539 10 14 3.5521 2.2419 5.1775 11 1 2.9069 3.5014 4.7272 12 1 2.6183 1.4938 6.0570 13 1 4.7913 2.5627 5.9303 14 6 4.0409 0.7935 -1.1992 15 6 3.6880 1.6177 -2.4104 16 6 4.5978 2.5354 -2.9011 17 6 4.2635 3.2882 -4.0161 18 6 3.0230 3.0852 -4.6017 19 6 2.1632 2.1533 -4.0520 20 6 0.8106 1.9282 -4.6771 21 8 0.6573 2.7923 -5.8049 22 6 -0.5986 2.6582 -6.4733 23 7 2.5149 1.4549 -2.9901 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6727 1.9577 0.8875 30 1 1.6808 1.9549 -0.8925 31 1 3.5836 -0.1856 1.3324 32 1 5.1130 0.7057 1.1461 33 1 4.7723 -0.2890 4.7465 34 1 3.6070 -0.2015 -1.2977 35 1 5.1249 0.7108 -1.1192 36 1 5.5570 2.6644 -2.4217 37 1 4.9545 4.0124 -4.4218 38 1 2.7309 3.6512 -5.4739 39 1 0.0319 2.1440 -3.9455 40 1 0.7280 0.8906 -5.0005 41 1 -1.4063 2.8894 -5.7788 42 1 -0.7109 1.6357 -6.8339 43 1 -0.6367 3.3476 -7.3168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232254276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:01 Heat of formation + Delta-G solvation = -9.097070 kcal Electronic energy + Delta-G solvation = -21895.002145 eV Core-core repulsion = 18747.396508 eV Total energy + Delta-G solvation = -3147.605637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25368 -38.04360 -37.11429 -32.81998 -32.74264 -32.39671 -31.24993 -28.30133 -27.07430 -26.13718 -25.75117 -24.07359 -22.21848 -21.99294 -21.43586 -19.17051 -16.83466 -16.56413 -16.16668 -16.10359 -15.77006 -15.20386 -15.10380 -14.71879 -14.27471 -14.12159 -13.82368 -13.30981 -13.14374 -12.64867 -12.60822 -12.34731 -12.18427 -11.60087 -11.56965 -11.46205 -11.19487 -10.98375 -10.91368 -10.67172 -10.62386 -10.45532 -10.09708 -9.91095 -9.64744 -9.52794 -9.26262 -9.07964 -8.59880 -8.39224 -7.10792 -5.99646 -3.99978 1.30800 1.47983 3.30244 3.32759 3.40297 3.45593 3.90967 4.46206 4.55684 4.83703 4.95229 5.03793 5.06770 5.18876 5.25346 5.34738 5.36065 5.36762 5.41865 5.47710 5.68026 5.70577 5.74705 5.89764 5.97902 6.01380 6.19860 6.28243 6.31063 6.43741 6.52550 6.56900 6.67009 6.84655 6.86113 6.95101 7.11446 7.34670 7.48849 7.85054 8.11751 8.19466 8.27631 8.58543 9.08410 9.63898 11.11033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.004100 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.579922 B = 6828.053212 C = 7388.011265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.070 3.930 4 N -0.529 5.529 5 C 0.189 3.811 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.095 3.905 15 C 0.158 3.842 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.161 4.161 19 C 0.118 3.882 20 C 0.117 3.883 21 O -0.390 6.390 22 C 0.034 3.966 23 N -0.472 5.472 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.005 0.995 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.423 3.225 -18.602 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C -0.059 4.059 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.034 4.034 15 C 0.020 3.980 16 C -0.175 4.175 17 C -0.106 4.106 18 C -0.181 4.181 19 C -0.020 4.020 20 C 0.040 3.960 21 O -0.308 6.308 22 C -0.063 4.063 23 N -0.184 5.184 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.619 3.122 -18.171 19.589 hybrid contribution -0.075 0.106 0.628 0.641 sum -6.695 3.228 -17.543 19.052 Atomic orbital electron populations 1.21604 0.96742 1.00368 1.00933 1.22076 0.95419 1.00248 1.01864 1.22019 0.87888 0.94788 1.01192 1.62398 1.07130 1.54234 1.01530 1.19809 0.95015 0.93603 0.85187 1.21166 1.38633 1.04198 0.89959 0.91938 1.24965 0.95503 0.95141 0.98987 1.69969 1.42580 1.19013 1.22353 0.86483 0.78027 0.80477 0.82697 1.19696 1.21168 1.21089 1.21021 1.00033 0.94634 0.87681 1.21252 0.88208 0.93994 0.94573 1.21999 1.01619 0.96938 0.96973 1.21561 0.96237 0.97873 0.94919 1.21775 0.94503 0.99971 1.01854 1.20670 0.95271 0.93624 0.92427 1.20913 0.93565 0.93841 0.87661 1.87796 1.36558 1.62457 1.44001 1.22744 0.85319 1.01326 0.96901 1.67093 1.18236 1.24923 1.08099 0.93106 0.93548 0.93855 0.92519 0.91165 0.90713 0.92391 0.97702 0.95726 0.93069 0.93372 0.89950 0.84662 0.85116 0.84502 0.91056 0.91231 0.93813 0.93905 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.16 -2.99 5.28 -26.73 -0.14 -3.14 16 3 C 0.07 1.43 4.89 -3.82 -0.02 1.41 16 4 N -0.53 -11.53 4.69 -237.52 -1.11 -12.65 16 5 C 0.19 4.84 4.53 -4.98 -0.02 4.82 16 6 C -0.50 -14.01 8.39 -34.44 -0.29 -14.30 16 7 H 0.06 1.76 7.37 -52.48 -0.39 1.38 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.10 1.76 5.06 -4.97 -0.03 1.74 16 15 C 0.16 2.66 5.70 -82.59 -0.47 2.19 16 16 C -0.15 -2.28 9.72 -39.44 -0.38 -2.66 16 17 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 18 C -0.16 -2.12 9.41 -39.44 -0.37 -2.49 16 19 C 0.12 1.70 6.78 -82.59 -0.56 1.14 16 20 C 0.12 1.37 6.48 36.01 0.23 1.60 16 21 O -0.39 -4.25 9.15 -35.23 -0.32 -4.57 16 22 C 0.03 0.25 11.01 101.05 1.11 1.36 16 23 N -0.47 -7.77 8.71 -5.74 -0.05 -7.82 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 28 H 0.07 1.53 6.29 -51.93 -0.33 1.21 16 29 H 0.07 1.68 6.97 -51.93 -0.36 1.32 16 30 H 0.06 1.15 6.24 -51.93 -0.32 0.82 16 31 H 0.01 0.14 6.02 -51.93 -0.31 -0.17 16 32 H 0.02 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.05 0.91 6.06 -51.93 -0.31 0.59 16 35 H 0.08 1.45 7.82 -51.93 -0.41 1.04 16 36 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.14 1.60 7.00 -52.49 -0.37 1.23 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -30.68 347.07 -8.51 -39.19 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.90 Total: -0.13 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.06 Total: -10.16 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.43 Total: -46.29 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.32 Total: -4.57 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.68 -8.51 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232254276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.089 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds