Wall clock time and date at job start Tue Mar 31 2020 01:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47185 * 2 1 4 4 N 1.46913 * 109.46999 * 179.72424 * 3 2 1 5 5 C 1.46896 * 110.99711 * 297.90007 * 4 3 2 6 6 C 1.50697 * 109.47342 * 293.10014 * 5 4 3 7 7 H 1.08005 * 120.00157 * 354.97799 * 6 5 4 8 8 C 1.37874 * 120.00485 * 174.98554 * 6 5 4 9 9 N 1.31520 * 119.99564 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00474 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46971 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47073 * 119.99929 * 10 8 6 13 13 H 1.48503 * 109.47061 * 239.99956 * 10 8 6 14 14 C 1.46902 * 110.99559 * 61.85261 * 4 3 2 15 15 C 1.50700 * 109.47177 * 66.04920 * 14 4 3 16 16 C 1.38227 * 119.61898 * 95.01358 * 15 14 4 17 17 C 1.38632 * 119.16163 * 179.97438 * 16 15 14 18 18 C 1.38663 * 118.41960 * 359.75143 * 17 16 15 19 19 C 1.38194 * 119.16314 * 0.49659 * 18 17 16 20 20 C 1.50700 * 119.61712 * 179.77107 * 19 18 17 21 21 O 1.42900 * 109.47080 * 359.72472 * 20 19 18 22 22 C 1.42898 * 114.00080 * 180.02562 * 21 20 19 23 23 N 1.31855 * 119.61671 * 274.99501 * 15 14 4 24 24 H 1.09004 * 109.46492 * 299.99725 * 1 2 3 25 25 H 1.09005 * 109.46993 * 59.99299 * 1 2 3 26 26 H 1.08992 * 109.47552 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46492 * 240.00275 * 2 1 3 28 28 H 1.08999 * 109.47255 * 120.00335 * 2 1 3 29 29 H 1.09000 * 109.47283 * 59.72661 * 3 2 1 30 30 H 1.09004 * 109.47625 * 299.72076 * 3 2 1 31 31 H 1.08995 * 109.47560 * 53.09839 * 5 4 3 32 32 H 1.08999 * 109.46966 * 173.10044 * 5 4 3 33 33 H 0.97000 * 119.99703 * 179.97438 * 9 8 6 34 34 H 1.08991 * 109.47184 * 306.04830 * 14 4 3 35 35 H 1.09003 * 109.46510 * 186.04706 * 14 4 3 36 36 H 1.08001 * 120.42044 * 359.96243 * 16 15 14 37 37 H 1.08002 * 120.78976 * 180.02562 * 17 16 15 38 38 H 1.08002 * 120.41959 * 180.24425 * 18 17 16 39 39 H 1.08996 * 109.46773 * 239.72495 * 20 19 18 40 40 H 1.09002 * 109.46774 * 119.72442 * 20 19 18 41 41 H 1.08998 * 109.46942 * 59.99945 * 22 21 20 42 42 H 1.09003 * 109.46834 * 300.00011 * 22 21 20 43 43 H 1.08998 * 109.47211 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0067 5 6 4.0300 0.8026 1.2221 6 6 3.6842 1.6466 2.4217 7 1 3.2046 2.6050 2.2876 8 6 3.9801 1.1954 3.6905 9 7 4.5637 0.0282 3.8539 10 14 3.5521 2.2419 5.1775 11 1 2.9069 3.5014 4.7272 12 1 2.6183 1.4938 6.0570 13 1 4.7913 2.5627 5.9303 14 6 4.0409 0.7935 -1.1992 15 6 3.6880 1.6177 -2.4104 16 6 4.5978 2.5354 -2.9011 17 6 4.2635 3.2882 -4.0161 18 6 3.0230 3.0852 -4.6017 19 6 2.1632 2.1533 -4.0520 20 6 0.8106 1.9282 -4.6771 21 8 0.6573 2.7923 -5.8049 22 6 -0.5986 2.6582 -6.4733 23 7 2.5149 1.4549 -2.9901 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6727 1.9577 0.8875 30 1 1.6808 1.9549 -0.8925 31 1 3.5836 -0.1856 1.3324 32 1 5.1130 0.7057 1.1461 33 1 4.7723 -0.2890 4.7465 34 1 3.6070 -0.2015 -1.2977 35 1 5.1249 0.7108 -1.1192 36 1 5.5570 2.6644 -2.4217 37 1 4.9545 4.0124 -4.4218 38 1 2.7309 3.6512 -5.4739 39 1 0.0319 2.1440 -3.9455 40 1 0.7280 0.8906 -5.0005 41 1 -1.4063 2.8894 -5.7788 42 1 -0.7109 1.6357 -6.8339 43 1 -0.6367 3.3476 -7.3168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232254276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:00 Heat of formation + Delta-G solvation = -28.586732 kcal Electronic energy + Delta-G solvation = -21895.847280 eV Core-core repulsion = 18747.396508 eV Total energy + Delta-G solvation = -3148.450772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39727 -39.13333 -38.48121 -34.86566 -34.05911 -33.51584 -32.73539 -29.65155 -28.59431 -27.45934 -26.57643 -25.82882 -23.74744 -23.32174 -22.70086 -20.82425 -18.37550 -17.79410 -17.48034 -17.05238 -16.91198 -16.68962 -16.42536 -16.19099 -15.81590 -15.44530 -15.21553 -14.62218 -14.50806 -14.19515 -13.78596 -13.50353 -13.32924 -13.21823 -12.85940 -12.79839 -12.64532 -12.59893 -12.41724 -12.27631 -12.25191 -12.20670 -11.82665 -11.30455 -11.27692 -10.87867 -10.61956 -10.57171 -10.32046 -9.73023 -8.89135 -8.17382 -6.26108 0.18516 0.39198 1.40525 1.41294 1.54636 2.40937 2.46783 2.75802 3.15183 3.45060 3.65664 3.76635 3.91665 4.16128 4.16866 4.21936 4.30335 4.39602 4.41854 4.53138 4.58085 4.59721 4.61416 4.62489 4.73663 4.81052 4.85106 4.90626 4.96008 5.06880 5.13568 5.18857 5.26038 5.33034 5.36331 5.44900 5.53319 5.69519 5.81365 6.09020 6.15370 6.35312 6.63764 6.89645 7.07634 7.42733 8.93238 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.004100 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.579922 B = 6828.053212 C = 7388.011265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C 0.078 3.922 4 N -0.536 5.536 5 C 0.205 3.795 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.100 3.900 15 C 0.134 3.866 16 C -0.163 4.163 17 C -0.072 4.072 18 C -0.157 4.157 19 C 0.105 3.895 20 C 0.122 3.878 21 O -0.403 6.403 22 C 0.027 3.973 23 N -0.492 5.492 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.070 0.930 31 H -0.018 1.018 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 4.680 -20.085 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C -0.050 4.050 4 N -0.259 5.259 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.203 1.203 14 C -0.028 4.028 15 C -0.003 4.003 16 C -0.184 4.184 17 C -0.097 4.097 18 C -0.177 4.177 19 C -0.033 4.033 20 C 0.045 3.955 21 O -0.322 6.322 22 C -0.069 4.069 23 N -0.203 5.203 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.088 0.912 31 H -0.001 1.001 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.646 4.580 -19.675 21.600 hybrid contribution 0.226 -0.330 0.939 1.021 sum -7.420 4.250 -18.736 20.595 Atomic orbital electron populations 1.21552 0.94092 1.01709 1.01611 1.21931 0.97709 0.98736 1.00210 1.21913 0.87131 0.95539 1.00427 1.62274 1.08014 1.54245 1.01400 1.19442 0.93461 0.92460 0.86699 1.21408 1.38652 1.04165 0.91170 0.92582 1.25815 0.95218 0.96325 1.01984 1.70084 1.43431 1.20572 1.23240 0.85416 0.77995 0.78860 0.78846 1.19072 1.20483 1.20333 1.20957 0.99972 0.94602 0.87318 1.20955 0.89510 0.95256 0.94609 1.22145 1.01643 0.96764 0.97810 1.21937 0.96600 0.97510 0.93684 1.22062 0.94315 0.99293 1.02007 1.21148 0.96693 0.93531 0.91971 1.20848 0.92110 0.94447 0.88068 1.87758 1.38380 1.62361 1.43737 1.22969 0.84108 1.02525 0.97294 1.66993 1.18249 1.25891 1.09205 0.93417 0.91810 0.92225 0.92195 0.94647 0.93089 0.91185 1.00062 0.97897 0.92782 0.94130 0.89715 0.83851 0.81636 0.82675 0.90861 0.90471 0.93169 0.92932 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.91 71.98 0.71 -3.42 16 2 C -0.15 -5.73 5.28 30.59 0.16 -5.57 16 3 C 0.08 3.28 4.89 86.30 0.42 3.70 16 4 N -0.54 -24.14 4.69 -905.37 -4.24 -28.38 16 5 C 0.21 11.03 4.53 85.56 0.39 11.42 16 6 C -0.52 -29.65 8.39 25.60 0.21 -29.44 16 7 H 0.06 3.23 7.37 -2.91 -0.02 3.21 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.10 3.82 5.06 85.56 0.43 4.25 16 15 C 0.13 4.49 5.70 42.55 0.24 4.73 16 16 C -0.16 -4.61 9.72 22.36 0.22 -4.39 16 17 C -0.07 -1.64 10.18 22.47 0.23 -1.41 16 18 C -0.16 -3.74 9.41 22.36 0.21 -3.53 16 19 C 0.10 2.84 6.78 42.54 0.29 3.13 16 20 C 0.12 2.62 6.48 71.24 0.46 3.09 16 21 O -0.40 -7.79 9.15 -148.98 -1.36 -9.15 16 22 C 0.03 0.32 11.01 113.37 1.25 1.57 16 23 N -0.49 -15.82 8.71 -172.07 -1.50 -17.32 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.28 6.33 -2.38 -0.02 2.26 16 28 H 0.03 1.61 6.29 -2.39 -0.02 1.60 16 29 H 0.05 2.35 6.97 -2.39 -0.02 2.34 16 30 H 0.07 2.78 6.24 -2.39 -0.01 2.76 16 31 H -0.02 -1.06 6.02 -2.39 -0.01 -1.07 16 32 H 0.00 0.17 7.91 -2.39 -0.02 0.15 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.04 1.59 6.06 -2.39 -0.01 1.58 16 35 H 0.08 3.10 7.82 -2.39 -0.02 3.09 16 36 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.16 3.12 7.00 -2.91 -0.02 3.10 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -66.89 347.07 1.87 -65.01 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.98 Total: 14.00 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 5.69 Total: -15.15 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -5.46 Total: -101.72 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.36 Total: -9.15 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.89 1.87 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232254276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.427 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds