Wall clock time and date at job start Tue Mar 31 2020 00:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 C 1.52998 * 109.47221 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99780 * 275.41522 * 5 4 3 7 7 H 1.08002 * 120.00231 * 34.01768 * 6 5 4 8 8 C 1.38813 * 119.99990 * 214.02030 * 6 5 4 9 9 N 1.31618 * 120.00246 * 23.36865 * 8 6 5 10 10 Si 1.86806 * 119.99689 * 203.37406 * 8 6 5 11 11 H 1.48500 * 109.47321 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47008 * 119.99705 * 10 8 6 13 13 H 1.48499 * 109.46914 * 239.99409 * 10 8 6 14 14 C 1.46501 * 120.00288 * 95.42110 * 5 4 3 15 15 C 1.50701 * 109.46682 * 269.99620 * 14 5 4 16 16 C 1.38235 * 119.61306 * 95.02347 * 15 14 5 17 17 C 1.38630 * 119.15558 * 179.97438 * 16 15 14 18 18 C 1.38669 * 118.42171 * 359.75028 * 17 16 15 19 19 C 1.38179 * 119.16564 * 0.48925 * 18 17 16 20 20 C 1.50702 * 119.62045 * 179.77171 * 19 18 17 21 21 O 1.42894 * 109.47197 * 359.73234 * 20 19 18 22 22 C 1.42900 * 114.00286 * 179.97438 * 21 20 19 23 23 N 1.31850 * 119.62265 * 274.99915 * 15 14 5 24 24 H 1.09003 * 109.47392 * 59.99866 * 1 2 3 25 25 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47251 * 299.99629 * 1 2 3 27 27 H 1.09011 * 109.47120 * 240.00455 * 2 1 3 28 28 H 1.08997 * 109.47220 * 120.00812 * 2 1 3 29 29 H 1.09005 * 109.46299 * 60.00296 * 3 2 1 30 30 H 1.08994 * 109.47225 * 300.00319 * 3 2 1 31 31 H 1.08994 * 109.47251 * 60.00371 * 4 3 2 32 32 H 1.09006 * 109.47331 * 300.00662 * 4 3 2 33 33 H 0.96998 * 120.00139 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47042 * 149.99847 * 14 5 4 35 35 H 1.09003 * 109.46696 * 29.99702 * 14 5 4 36 36 H 1.07992 * 120.42354 * 359.94929 * 16 15 14 37 37 H 1.07999 * 120.78970 * 180.02562 * 17 16 15 38 38 H 1.08003 * 120.42195 * 180.24428 * 18 17 16 39 39 H 1.08999 * 109.47089 * 239.72642 * 20 19 18 40 40 H 1.09001 * 109.46854 * 119.73459 * 20 19 18 41 41 H 1.08994 * 109.47344 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46675 * 59.99777 * 22 21 20 43 43 H 1.08996 * 109.46988 * 300.00374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1805 3.5072 -1.1803 7 1 3.4791 3.3298 -1.9822 8 6 5.2058 4.4281 -1.3461 9 7 6.2978 4.3356 -0.6171 10 14 5.0358 5.7988 -2.6039 11 1 3.7233 5.6822 -3.2887 12 1 5.1218 7.1132 -1.9183 13 1 6.1273 5.6902 -3.6049 14 6 4.4160 3.4737 1.2632 15 6 3.2051 4.1680 1.8313 16 6 2.4213 3.5184 2.7665 17 6 1.3099 4.1662 3.2833 18 6 1.0301 5.4507 2.8420 19 6 1.8566 6.0344 1.9010 20 6 1.5591 7.4279 1.4104 21 8 0.3834 7.9196 2.0568 22 6 0.0119 9.2414 1.6607 23 7 2.9058 5.3881 1.4310 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 7.0141 4.9793 -0.7327 34 1 5.2040 4.2053 1.0850 35 1 4.7699 2.7234 1.9704 36 1 2.6713 2.5189 3.0902 37 1 0.6795 3.6836 4.0155 38 1 0.1747 5.9867 3.2260 39 1 1.3995 7.4073 0.3324 40 1 2.4006 8.0814 1.6405 41 1 -0.8894 9.5411 2.1953 42 1 -0.1797 9.2587 0.5878 43 1 0.8213 9.9323 1.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232257178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:02 Heat of formation + Delta-G solvation = -1.955184 kcal Electronic energy + Delta-G solvation = -22281.411516 eV Core-core repulsion = 19134.115574 eV Total energy + Delta-G solvation = -3147.295941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.69308 -37.66443 -36.24612 -34.09486 -32.09749 -31.75045 -30.98809 -28.26581 -27.49640 -25.80822 -25.41598 -23.90872 -22.01333 -21.38358 -20.54244 -20.09164 -16.82343 -16.45800 -16.07307 -15.83103 -15.34046 -14.97972 -14.80939 -14.59986 -13.90128 -13.79337 -13.53066 -13.41114 -13.14517 -12.46769 -12.29942 -12.18406 -12.11529 -11.79853 -11.31957 -11.30144 -11.13091 -10.93871 -10.68861 -10.56157 -10.51079 -10.33861 -10.01222 -9.93600 -9.83569 -9.68719 -9.12475 -8.60485 -8.42149 -8.10249 -6.60309 -5.75094 -3.27172 1.74771 1.96335 3.42947 3.50871 3.53594 3.63749 4.38437 4.58821 4.96867 5.26119 5.26848 5.28915 5.29882 5.38114 5.38757 5.53671 5.56827 5.57571 5.62244 5.69118 5.75443 5.79341 5.89739 5.97331 6.14877 6.17031 6.30213 6.36439 6.38248 6.44684 6.54840 6.61877 6.67296 6.77145 6.85057 6.98674 7.16648 7.20694 7.41704 7.68190 7.87161 8.51592 8.88084 9.20011 9.85789 10.38509 11.25870 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.007691 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.840828 B = 3639.839825 C = 5319.785776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.148 3.852 5 N -0.570 5.570 6 C -0.250 4.250 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.883 5.883 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.293 1.293 14 C 0.178 3.822 15 C 0.149 3.851 16 C -0.179 4.179 17 C -0.085 4.085 18 C -0.177 4.177 19 C 0.117 3.883 20 C 0.116 3.884 21 O -0.390 6.390 22 C 0.034 3.966 23 N -0.456 5.456 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.042 0.958 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 0.982 6.552 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.021 3.979 5 N -0.288 5.288 6 C -0.379 4.379 7 H 0.076 0.924 8 C -0.178 4.178 9 N -0.526 5.526 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.220 1.220 14 C 0.051 3.949 15 C 0.007 3.993 16 C -0.200 4.200 17 C -0.111 4.111 18 C -0.197 4.197 19 C -0.021 4.021 20 C 0.039 3.961 21 O -0.309 6.309 22 C -0.063 4.063 23 N -0.167 5.167 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.808 1.356 6.025 11.591 hybrid contribution -0.790 0.618 -0.160 1.016 sum -10.598 1.974 5.865 12.273 Atomic orbital electron populations 1.21757 0.96821 1.00523 1.01505 1.21490 0.94980 0.98293 1.01190 1.22256 0.99580 0.94495 1.01681 1.20928 0.91179 0.86761 0.98990 1.43695 1.75259 1.07946 1.01940 1.18926 1.07469 1.19042 0.92463 0.92395 1.24940 0.94019 1.00770 0.98083 1.69956 1.04566 1.35620 1.42411 0.86354 0.77368 0.83055 0.80684 1.20343 1.21249 1.22023 1.20117 0.92300 0.96484 0.86027 1.22940 0.98259 0.88671 0.89384 1.21997 0.96840 1.01042 1.00108 1.21421 0.96517 0.94606 0.98565 1.21625 1.01722 0.96077 1.00324 1.20761 0.92127 0.95049 0.94161 1.20939 0.87223 0.91486 0.96409 1.87785 1.44993 1.31135 1.66954 1.22717 1.00178 0.83651 0.99752 1.67268 1.15866 1.09564 1.23963 0.93103 0.93554 0.93186 0.92509 0.92711 0.92742 0.92648 0.93480 0.94636 0.93585 0.86559 0.93942 0.85884 0.86054 0.85209 0.91190 0.91349 0.89674 0.93963 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.94 16 3 C -0.14 -2.58 5.51 -26.73 -0.15 -2.72 16 4 C 0.15 3.06 5.72 -4.04 -0.02 3.03 16 5 N -0.57 -13.99 2.44 -174.61 -0.43 -14.42 16 6 C -0.25 -6.82 9.48 -15.06 -0.14 -6.97 16 7 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 8 C 0.02 0.62 4.94 -17.43 -0.09 0.53 16 9 N -0.88 -25.26 11.34 55.49 0.63 -24.63 16 10 Si 0.90 22.25 29.61 -169.99 -5.03 17.22 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.18 4.19 5.64 -5.19 -0.03 4.16 16 15 C 0.15 3.21 6.29 -82.58 -0.52 2.69 16 16 C -0.18 -3.23 8.25 -39.44 -0.33 -3.56 16 17 C -0.09 -1.38 10.18 -39.28 -0.40 -1.78 16 18 C -0.18 -3.04 9.41 -39.44 -0.37 -3.41 16 19 C 0.12 2.27 6.78 -82.59 -0.56 1.71 16 20 C 0.12 1.93 6.48 36.01 0.23 2.16 16 21 O -0.39 -5.71 9.15 -35.23 -0.32 -6.04 16 22 C 0.03 0.36 11.01 101.05 1.11 1.47 16 23 N -0.46 -10.27 10.19 -5.74 -0.06 -10.33 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.12 3.16 5.33 -51.93 -0.28 2.88 16 35 H 0.04 0.92 7.76 -51.93 -0.40 0.51 16 36 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.13 2.00 7.00 -52.48 -0.37 1.64 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -30.10 354.03 -8.18 -38.29 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.26 Total: 0.78 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.05 Total: -6.21 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.14 Total: -49.37 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.32 Total: -6.04 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.10 -8.18 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232257178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.334 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds