Wall clock time and date at job start Tue Mar 31 2020 00:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 C 1.52998 * 109.47221 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99780 * 275.41522 * 5 4 3 7 7 H 1.08002 * 120.00231 * 34.01768 * 6 5 4 8 8 C 1.38813 * 119.99990 * 214.02030 * 6 5 4 9 9 N 1.31618 * 120.00246 * 23.36865 * 8 6 5 10 10 Si 1.86806 * 119.99689 * 203.37406 * 8 6 5 11 11 H 1.48500 * 109.47321 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47008 * 119.99705 * 10 8 6 13 13 H 1.48499 * 109.46914 * 239.99409 * 10 8 6 14 14 C 1.46501 * 120.00288 * 95.42110 * 5 4 3 15 15 C 1.50701 * 109.46682 * 269.99620 * 14 5 4 16 16 C 1.38235 * 119.61306 * 95.02347 * 15 14 5 17 17 C 1.38630 * 119.15558 * 179.97438 * 16 15 14 18 18 C 1.38669 * 118.42171 * 359.75028 * 17 16 15 19 19 C 1.38179 * 119.16564 * 0.48925 * 18 17 16 20 20 C 1.50702 * 119.62045 * 179.77171 * 19 18 17 21 21 O 1.42894 * 109.47197 * 359.73234 * 20 19 18 22 22 C 1.42900 * 114.00286 * 179.97438 * 21 20 19 23 23 N 1.31850 * 119.62265 * 274.99915 * 15 14 5 24 24 H 1.09003 * 109.47392 * 59.99866 * 1 2 3 25 25 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47251 * 299.99629 * 1 2 3 27 27 H 1.09011 * 109.47120 * 240.00455 * 2 1 3 28 28 H 1.08997 * 109.47220 * 120.00812 * 2 1 3 29 29 H 1.09005 * 109.46299 * 60.00296 * 3 2 1 30 30 H 1.08994 * 109.47225 * 300.00319 * 3 2 1 31 31 H 1.08994 * 109.47251 * 60.00371 * 4 3 2 32 32 H 1.09006 * 109.47331 * 300.00662 * 4 3 2 33 33 H 0.96998 * 120.00139 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47042 * 149.99847 * 14 5 4 35 35 H 1.09003 * 109.46696 * 29.99702 * 14 5 4 36 36 H 1.07992 * 120.42354 * 359.94929 * 16 15 14 37 37 H 1.07999 * 120.78970 * 180.02562 * 17 16 15 38 38 H 1.08003 * 120.42195 * 180.24428 * 18 17 16 39 39 H 1.08999 * 109.47089 * 239.72642 * 20 19 18 40 40 H 1.09001 * 109.46854 * 119.73459 * 20 19 18 41 41 H 1.08994 * 109.47344 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46675 * 59.99777 * 22 21 20 43 43 H 1.08996 * 109.46988 * 300.00374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1805 3.5072 -1.1803 7 1 3.4791 3.3298 -1.9822 8 6 5.2058 4.4281 -1.3461 9 7 6.2978 4.3356 -0.6171 10 14 5.0358 5.7988 -2.6039 11 1 3.7233 5.6822 -3.2887 12 1 5.1218 7.1132 -1.9183 13 1 6.1273 5.6902 -3.6049 14 6 4.4160 3.4737 1.2632 15 6 3.2051 4.1680 1.8313 16 6 2.4213 3.5184 2.7665 17 6 1.3099 4.1662 3.2833 18 6 1.0301 5.4507 2.8420 19 6 1.8566 6.0344 1.9010 20 6 1.5591 7.4279 1.4104 21 8 0.3834 7.9196 2.0568 22 6 0.0119 9.2414 1.6607 23 7 2.9058 5.3881 1.4310 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 7.0141 4.9793 -0.7327 34 1 5.2040 4.2053 1.0850 35 1 4.7699 2.7234 1.9704 36 1 2.6713 2.5189 3.0902 37 1 0.6795 3.6836 4.0155 38 1 0.1747 5.9867 3.2260 39 1 1.3995 7.4073 0.3324 40 1 2.4006 8.0814 1.6405 41 1 -0.8894 9.5411 2.1953 42 1 -0.1797 9.2587 0.5878 43 1 0.8213 9.9323 1.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232257178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:01 Heat of formation + Delta-G solvation = -18.929750 kcal Electronic energy + Delta-G solvation = -22282.147588 eV Core-core repulsion = 19134.115574 eV Total energy + Delta-G solvation = -3148.032014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14578 -38.84136 -37.90179 -35.58066 -33.63634 -33.35767 -32.63427 -29.69660 -28.88513 -27.41296 -26.58937 -25.56246 -23.44841 -22.79895 -22.03359 -21.72057 -18.72748 -17.72510 -17.47621 -16.97091 -16.83070 -16.55655 -16.28650 -16.05903 -15.43555 -15.35287 -15.26918 -14.63393 -14.53356 -13.91443 -13.66876 -13.43609 -13.38760 -13.23398 -13.02762 -12.82424 -12.62749 -12.46667 -12.31635 -12.14601 -12.03309 -11.91845 -11.79679 -11.65081 -11.29857 -10.89501 -10.55333 -10.45869 -10.11087 -9.57145 -8.58853 -7.81017 -5.37443 0.31151 0.56483 1.40600 1.45371 1.52664 2.48634 2.51900 2.93302 3.30687 3.69616 3.79909 3.94599 4.07637 4.16500 4.21341 4.32373 4.35782 4.36035 4.43284 4.52153 4.55385 4.56760 4.57416 4.77013 4.83068 4.88498 4.92095 4.97540 5.06342 5.08961 5.10288 5.19553 5.30692 5.40345 5.42040 5.51007 5.64454 5.67245 5.76220 5.97108 6.10672 6.47166 7.17643 7.38345 7.88854 8.36821 9.15044 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.007691 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.840828 B = 3639.839825 C = 5319.785776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.124 4.124 4 C 0.145 3.855 5 N -0.585 5.585 6 C -0.251 4.251 7 H 0.043 0.957 8 C -0.019 4.019 9 N -0.909 5.909 10 Si 0.942 3.058 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.288 1.288 14 C 0.182 3.818 15 C 0.125 3.875 16 C -0.174 4.174 17 C -0.073 4.073 18 C -0.168 4.168 19 C 0.094 3.906 20 C 0.123 3.877 21 O -0.399 6.399 22 C 0.025 3.975 23 N -0.500 5.500 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.046 0.954 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 0.393 8.180 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.164 4.164 4 C 0.020 3.980 5 N -0.305 5.305 6 C -0.381 4.381 7 H 0.061 0.939 8 C -0.217 4.217 9 N -0.553 5.553 10 Si 0.772 3.228 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.215 1.215 14 C 0.055 3.945 15 C -0.016 4.016 16 C -0.195 4.195 17 C -0.099 4.099 18 C -0.188 4.188 19 C -0.043 4.043 20 C 0.046 3.954 21 O -0.317 6.317 22 C -0.071 4.071 23 N -0.212 5.212 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.170 0.830 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.293 0.762 7.660 14.504 hybrid contribution -0.113 0.826 -0.579 1.015 sum -12.406 1.588 7.081 14.372 Atomic orbital electron populations 1.21724 0.95311 1.01981 1.01266 1.21445 0.96251 0.95526 1.02136 1.22038 0.97516 0.96820 1.00019 1.21052 0.92728 0.84990 0.99208 1.43845 1.75747 1.09371 1.01516 1.18946 1.06583 1.19351 0.93263 0.93937 1.25441 0.94013 1.02415 0.99833 1.70054 1.05079 1.36215 1.43970 0.85616 0.77267 0.80820 0.79144 1.20206 1.21752 1.21534 1.19880 0.92578 0.96014 0.86016 1.22569 0.98374 0.89193 0.91442 1.22139 0.96707 1.01790 0.98863 1.21884 0.95821 0.93941 0.98226 1.21933 1.01437 0.96536 0.98944 1.21180 0.91987 0.96147 0.95012 1.20772 0.88160 0.90577 0.95882 1.87745 1.43941 1.33156 1.66901 1.22999 1.01531 0.81955 1.00571 1.67119 1.17842 1.10598 1.25650 0.93942 0.91244 0.92875 0.92374 0.90968 0.93018 0.95603 0.94811 0.92714 0.94004 0.90427 0.92632 0.83680 0.81563 0.83037 0.92122 0.91321 0.87119 0.93494 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.14 5.93 30.59 0.18 -2.96 16 3 C -0.12 -4.47 5.51 30.59 0.17 -4.30 16 4 C 0.15 6.01 5.72 86.38 0.49 6.51 16 5 N -0.59 -29.36 2.44 -706.35 -1.73 -31.09 16 6 C -0.25 -14.20 9.48 84.03 0.80 -13.40 16 7 H 0.04 2.48 7.93 -2.91 -0.02 2.46 16 8 C -0.02 -1.11 4.94 84.86 0.42 -0.69 16 9 N -0.91 -53.94 11.34 21.65 0.25 -53.70 16 10 Si 0.94 47.15 29.61 68.60 2.03 49.18 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 14 C 0.18 8.77 5.64 85.63 0.48 9.26 16 15 C 0.12 5.38 6.29 42.56 0.27 5.65 16 16 C -0.17 -5.91 8.25 22.36 0.18 -5.72 16 17 C -0.07 -2.10 10.18 22.47 0.23 -1.87 16 18 C -0.17 -5.34 9.41 22.36 0.21 -5.13 16 19 C 0.09 3.61 6.78 42.54 0.29 3.90 16 20 C 0.12 4.04 6.48 71.24 0.46 4.51 16 21 O -0.40 -10.96 9.15 -148.98 -1.36 -12.32 16 22 C 0.03 0.48 11.01 113.37 1.25 1.73 16 23 N -0.50 -22.89 10.19 -172.07 -1.75 -24.65 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.88 6.51 -2.38 -0.02 1.86 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 32 H 0.05 2.03 7.83 -2.38 -0.02 2.01 16 33 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.08 4.40 5.33 -2.39 -0.01 4.39 16 35 H 0.06 2.42 7.76 -2.39 -0.02 2.40 16 36 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.15 4.13 7.00 -2.91 -0.02 4.11 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.55 354.03 4.54 -63.01 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.96 Total: 14.79 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.15 Total: -5.23 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.23 Total: -109.43 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.36 Total: -12.32 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -67.55 4.54 -63.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232257178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.078 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds