Wall clock time and date at job start Tue Mar 31 2020 00:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 C 1.52994 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47558 * 173.34050 * 4 3 2 6 6 C 1.36942 * 120.00024 * 287.39092 * 5 4 3 7 7 H 1.07999 * 119.99550 * 5.20312 * 6 5 4 8 8 C 1.38808 * 120.00192 * 185.21419 * 6 5 4 9 9 N 1.31615 * 120.00217 * 29.31547 * 8 6 5 10 10 Si 1.86800 * 119.99704 * 209.32032 * 8 6 5 11 11 H 1.48497 * 109.47204 * 89.99909 * 10 8 6 12 12 H 1.48503 * 109.47074 * 209.99648 * 10 8 6 13 13 H 1.48505 * 109.47281 * 329.99693 * 10 8 6 14 14 C 1.46502 * 120.00275 * 107.38609 * 5 4 3 15 15 C 1.50702 * 109.46901 * 259.81532 * 14 5 4 16 16 C 1.38092 * 120.35795 * 272.11074 * 15 14 5 17 17 N 1.31935 * 120.83313 * 180.02562 * 16 15 14 18 18 C 1.32274 * 121.64909 * 0.02562 * 17 16 15 19 19 O 1.35674 * 119.68340 * 179.97438 * 18 17 16 20 20 C 1.42893 * 117.00387 * 0.02562 * 19 18 17 21 21 C 1.38878 * 120.63281 * 359.73032 * 18 17 16 22 22 C 1.38426 * 119.11090 * 0.51790 * 21 18 17 23 23 C 1.50700 * 120.75901 * 179.75669 * 22 21 18 24 24 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46735 * 299.99863 * 1 2 3 26 26 H 1.08995 * 109.47229 * 59.99617 * 1 2 3 27 27 H 1.09004 * 109.46735 * 240.00137 * 2 1 3 28 28 H 1.08995 * 109.47229 * 120.00383 * 2 1 3 29 29 H 1.09000 * 109.47564 * 60.00149 * 3 2 1 30 30 H 1.09006 * 109.47031 * 299.99918 * 3 2 1 31 31 H 1.08998 * 109.47489 * 53.33602 * 4 3 2 32 32 H 1.09009 * 109.46735 * 293.33704 * 4 3 2 33 33 H 0.97003 * 119.99874 * 184.29503 * 9 8 6 34 34 H 1.09007 * 109.46725 * 139.81813 * 14 5 4 35 35 H 1.08996 * 109.47072 * 19.81463 * 14 5 4 36 36 H 1.08005 * 119.58175 * 0.02562 * 16 15 14 37 37 H 1.09000 * 109.47596 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.46566 * 299.99565 * 20 19 18 39 39 H 1.09003 * 109.47562 * 59.98959 * 20 19 18 40 40 H 1.07995 * 120.44450 * 180.28172 * 21 18 17 41 41 H 1.09000 * 109.47122 * 267.64197 * 23 22 21 42 42 H 1.08996 * 109.47048 * 147.64283 * 23 22 21 43 43 H 1.08998 * 109.46973 * 27.63846 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8143 -0.1608 6 6 3.9519 3.4418 -1.3733 7 1 3.4333 2.9582 -2.1879 8 6 4.5108 4.6993 -1.5555 9 7 5.5741 5.0532 -0.8653 10 14 3.7535 5.8893 -2.7802 11 1 2.7279 6.7174 -2.0965 12 1 4.8128 6.7708 -3.3337 13 1 3.1180 5.1259 -3.8842 14 6 4.6605 3.5150 0.9762 15 6 3.6459 4.4479 1.5857 16 6 3.5089 5.7371 1.1102 17 7 2.6242 6.5618 1.6372 18 6 1.8384 6.1917 2.6349 19 8 0.9427 7.0726 3.1471 20 6 0.9054 8.3750 2.5603 21 6 1.9181 4.9083 3.1597 22 6 2.8401 4.0209 2.6320 23 6 2.9619 2.6212 3.1768 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.8290 -0.8252 32 1 3.9337 1.0352 0.9428 33 1 5.9275 5.9529 -0.9463 34 1 5.5222 4.0885 0.6345 35 1 4.9804 2.7882 1.7228 36 1 4.1340 6.0745 0.2966 37 1 0.1478 8.9777 3.0613 38 1 1.8799 8.8510 2.6701 39 1 0.6600 8.2898 1.5017 40 1 1.2719 4.6079 3.9712 41 1 3.7221 2.6001 3.9577 42 1 3.2474 1.9421 2.3734 43 1 2.0043 2.3089 3.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232352437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:10 Heat of formation + Delta-G solvation = 11.880578 kcal Electronic energy + Delta-G solvation = -22941.515548 eV Core-core repulsion = 19794.819571 eV Total energy + Delta-G solvation = -3146.695978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97999 -37.79725 -36.26904 -34.24440 -33.25230 -31.30867 -30.45298 -28.40565 -27.34354 -26.54084 -25.41276 -23.87499 -22.13541 -21.24505 -20.41840 -20.07916 -17.26871 -16.96923 -16.45159 -15.49563 -15.08331 -14.95051 -14.41652 -13.92994 -13.77485 -13.67627 -13.51090 -13.38880 -12.97013 -12.57619 -12.22697 -12.17759 -11.93545 -11.84571 -11.58031 -11.31111 -11.17092 -10.95546 -10.72386 -10.65645 -10.55683 -10.42447 -10.28653 -10.08980 -9.82397 -9.76107 -8.96022 -8.75519 -8.50275 -7.52168 -6.98325 -5.72489 -3.23656 1.96924 2.08327 3.38768 3.46312 3.51411 3.61568 4.43342 4.57456 5.09647 5.16516 5.33541 5.34403 5.44457 5.52824 5.55049 5.57766 5.61409 5.68055 5.76048 5.88521 5.91467 5.93165 6.01137 6.10831 6.16832 6.22976 6.27537 6.32283 6.37927 6.43212 6.50872 6.59166 6.79195 6.87732 6.94700 7.11930 7.25737 7.30325 7.66627 7.77691 7.91662 8.38337 8.71986 9.11572 9.77526 10.17190 11.10252 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.008641 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.576971 B = 3239.518691 C = 4586.460967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.148 3.852 5 N -0.584 5.584 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.011 4.011 9 N -0.890 5.890 10 Si 0.879 3.121 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.152 3.848 15 C -0.142 4.142 16 C 0.152 3.848 17 N -0.552 5.552 18 C 0.289 3.711 19 O -0.320 6.320 20 C 0.045 3.955 21 C -0.205 4.205 22 C -0.022 4.022 23 C -0.116 4.116 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.027 0.973 36 H 0.177 0.823 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -3.409 6.923 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.022 3.978 5 N -0.303 5.303 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.539 5.539 10 Si 0.708 3.292 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.026 3.974 15 C -0.147 4.147 16 C -0.003 4.003 17 N -0.275 5.275 18 C 0.111 3.889 19 O -0.229 6.229 20 C -0.051 4.051 21 C -0.226 4.226 22 C -0.031 4.031 23 C -0.173 4.173 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.164 0.836 35 H 0.046 0.954 36 H 0.193 0.807 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.972 -2.506 6.701 9.320 hybrid contribution -0.709 0.212 -0.403 0.843 sum -6.681 -2.294 6.299 9.464 Atomic orbital electron populations 1.21760 0.96710 1.00583 1.01632 1.21502 0.95145 0.98223 1.01146 1.22236 0.98958 0.94581 1.02220 1.20913 0.91800 0.86697 0.98428 1.44140 1.68998 1.10061 1.07062 1.19287 1.27072 0.99130 0.89697 0.90569 1.24421 0.97284 0.99145 0.99765 1.69661 1.19777 1.19234 1.45200 0.86619 0.79477 0.82013 0.81056 1.21000 1.21738 1.20560 1.20880 0.96799 0.92842 0.86842 1.21698 1.00833 0.96951 0.95191 1.23217 0.91513 0.89389 0.96176 1.67416 1.09118 1.39114 1.11854 1.19729 0.89655 0.88276 0.91282 1.86131 1.55015 1.23453 1.58259 1.22685 1.01872 0.81726 0.98798 1.20666 1.04399 0.92230 1.05263 1.20009 0.93190 0.95271 0.94610 1.20909 1.01689 0.93212 1.01441 0.93534 0.93111 0.93003 0.92515 0.92744 0.92617 0.91996 0.94474 0.93691 0.93300 0.83575 0.95416 0.80671 0.89546 0.92755 0.92764 0.85821 0.91368 0.89852 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.85 16 3 C -0.14 -2.43 5.23 -26.74 -0.14 -2.57 16 4 C 0.15 2.80 5.06 -4.05 -0.02 2.78 16 5 N -0.58 -13.28 2.62 -174.61 -0.46 -13.74 16 6 C -0.22 -5.66 9.16 -15.06 -0.14 -5.80 16 7 H 0.08 1.95 7.98 -52.49 -0.42 1.53 16 8 C -0.01 -0.29 3.39 -17.43 -0.06 -0.35 16 9 N -0.89 -23.08 8.55 55.49 0.47 -22.61 16 10 Si 0.88 21.15 29.24 -169.99 -4.97 16.18 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 3.38 4.91 -5.19 -0.03 3.35 16 15 C -0.14 -3.08 5.37 -104.47 -0.56 -3.64 16 16 C 0.15 3.57 10.06 -17.56 -0.18 3.39 16 17 N -0.55 -12.40 9.22 -13.33 -0.12 -12.52 16 18 C 0.29 5.93 7.49 -17.12 -0.13 5.80 16 19 O -0.32 -5.88 10.48 -18.72 -0.20 -6.07 16 20 C 0.04 0.68 10.38 101.05 1.05 1.73 16 21 C -0.20 -3.87 9.74 -39.28 -0.38 -4.25 16 22 C -0.02 -0.43 5.91 -104.35 -0.62 -1.05 16 23 C -0.12 -1.77 8.63 36.01 0.31 -1.46 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.01 6.97 -51.93 -0.36 0.65 16 30 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.77 6.12 -51.92 -0.32 0.45 16 33 H 0.26 6.50 8.25 -40.82 -0.34 6.16 16 34 H 0.15 3.68 4.75 -53.37 -0.25 3.42 16 35 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 36 H 0.18 4.40 4.41 -52.48 -0.23 4.17 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.32 3.54 -51.93 -0.18 1.13 16 43 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -27.30 336.21 -7.58 -34.88 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.70 Total: 4.27 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.68 Total: -5.46 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.11 Total: -48.86 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.20 Total: -6.07 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.97 Total: 16.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.30 -7.58 -34.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232352437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.763 kcal (2) G-P(sol) polarization free energy of solvation -27.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds