Wall clock time and date at job start Tue Mar 31 2020 00:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 C 1.52994 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47558 * 173.34050 * 4 3 2 6 6 C 1.36942 * 120.00024 * 287.39092 * 5 4 3 7 7 H 1.07999 * 119.99550 * 5.20312 * 6 5 4 8 8 C 1.38808 * 120.00192 * 185.21419 * 6 5 4 9 9 N 1.31615 * 120.00217 * 29.31547 * 8 6 5 10 10 Si 1.86800 * 119.99704 * 209.32032 * 8 6 5 11 11 H 1.48497 * 109.47204 * 89.99909 * 10 8 6 12 12 H 1.48503 * 109.47074 * 209.99648 * 10 8 6 13 13 H 1.48505 * 109.47281 * 329.99693 * 10 8 6 14 14 C 1.46502 * 120.00275 * 107.38609 * 5 4 3 15 15 C 1.50702 * 109.46901 * 259.81532 * 14 5 4 16 16 C 1.38092 * 120.35795 * 272.11074 * 15 14 5 17 17 N 1.31935 * 120.83313 * 180.02562 * 16 15 14 18 18 C 1.32274 * 121.64909 * 0.02562 * 17 16 15 19 19 O 1.35674 * 119.68340 * 179.97438 * 18 17 16 20 20 C 1.42893 * 117.00387 * 0.02562 * 19 18 17 21 21 C 1.38878 * 120.63281 * 359.73032 * 18 17 16 22 22 C 1.38426 * 119.11090 * 0.51790 * 21 18 17 23 23 C 1.50700 * 120.75901 * 179.75669 * 22 21 18 24 24 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46735 * 299.99863 * 1 2 3 26 26 H 1.08995 * 109.47229 * 59.99617 * 1 2 3 27 27 H 1.09004 * 109.46735 * 240.00137 * 2 1 3 28 28 H 1.08995 * 109.47229 * 120.00383 * 2 1 3 29 29 H 1.09000 * 109.47564 * 60.00149 * 3 2 1 30 30 H 1.09006 * 109.47031 * 299.99918 * 3 2 1 31 31 H 1.08998 * 109.47489 * 53.33602 * 4 3 2 32 32 H 1.09009 * 109.46735 * 293.33704 * 4 3 2 33 33 H 0.97003 * 119.99874 * 184.29503 * 9 8 6 34 34 H 1.09007 * 109.46725 * 139.81813 * 14 5 4 35 35 H 1.08996 * 109.47072 * 19.81463 * 14 5 4 36 36 H 1.08005 * 119.58175 * 0.02562 * 16 15 14 37 37 H 1.09000 * 109.47596 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.46566 * 299.99565 * 20 19 18 39 39 H 1.09003 * 109.47562 * 59.98959 * 20 19 18 40 40 H 1.07995 * 120.44450 * 180.28172 * 21 18 17 41 41 H 1.09000 * 109.47122 * 267.64197 * 23 22 21 42 42 H 1.08996 * 109.47048 * 147.64283 * 23 22 21 43 43 H 1.08998 * 109.46973 * 27.63846 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8143 -0.1608 6 6 3.9519 3.4418 -1.3733 7 1 3.4333 2.9582 -2.1879 8 6 4.5108 4.6993 -1.5555 9 7 5.5741 5.0532 -0.8653 10 14 3.7535 5.8893 -2.7802 11 1 2.7279 6.7174 -2.0965 12 1 4.8128 6.7708 -3.3337 13 1 3.1180 5.1259 -3.8842 14 6 4.6605 3.5150 0.9762 15 6 3.6459 4.4479 1.5857 16 6 3.5089 5.7371 1.1102 17 7 2.6242 6.5618 1.6372 18 6 1.8384 6.1917 2.6349 19 8 0.9427 7.0726 3.1471 20 6 0.9054 8.3750 2.5603 21 6 1.9181 4.9083 3.1597 22 6 2.8401 4.0209 2.6320 23 6 2.9619 2.6212 3.1768 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.8290 -0.8252 32 1 3.9337 1.0352 0.9428 33 1 5.9275 5.9529 -0.9463 34 1 5.5222 4.0885 0.6345 35 1 4.9804 2.7882 1.7228 36 1 4.1340 6.0745 0.2966 37 1 0.1478 8.9777 3.0613 38 1 1.8799 8.8510 2.6701 39 1 0.6600 8.2898 1.5017 40 1 1.2719 4.6079 3.9712 41 1 3.7221 2.6001 3.9577 42 1 3.2474 1.9421 2.3734 43 1 2.0043 2.3089 3.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232352437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:09 Heat of formation + Delta-G solvation = -3.544726 kcal Electronic energy + Delta-G solvation = -22942.184440 eV Core-core repulsion = 19794.819571 eV Total energy + Delta-G solvation = -3147.364869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53278 -39.30090 -37.83213 -35.67368 -34.78809 -33.03603 -32.01727 -29.79918 -28.79666 -27.88101 -27.13218 -25.42037 -23.64863 -22.70712 -21.77871 -21.69838 -18.83873 -18.68663 -18.02687 -16.93066 -16.87699 -16.31930 -16.01238 -15.54648 -15.30779 -15.19300 -15.08267 -14.62238 -14.42213 -14.00046 -13.65639 -13.52491 -13.29066 -13.25023 -12.93950 -12.83271 -12.80729 -12.57887 -12.40395 -12.17245 -12.02165 -11.91424 -11.72769 -11.65454 -11.58192 -11.25819 -10.72019 -10.27618 -10.22279 -9.14119 -8.84270 -7.65310 -5.18162 0.38894 0.50259 1.40105 1.48761 1.50809 2.22557 2.50878 2.93031 3.21144 3.59694 3.81420 4.07707 4.18189 4.20701 4.27161 4.31237 4.37145 4.43608 4.45386 4.47751 4.57591 4.68332 4.74745 4.79107 4.86964 4.95983 5.02841 5.04484 5.07592 5.09736 5.21341 5.27060 5.34646 5.44295 5.53301 5.59380 5.69292 5.71929 5.74659 5.95280 6.35431 6.53354 7.08996 7.19989 7.94082 8.27911 9.11689 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.008641 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.576971 B = 3239.518691 C = 4586.460967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.145 3.855 5 N -0.594 5.594 6 C -0.227 4.227 7 H 0.067 0.933 8 C -0.037 4.037 9 N -0.898 5.898 10 Si 0.912 3.088 11 H -0.302 1.302 12 H -0.294 1.294 13 H -0.277 1.277 14 C 0.157 3.843 15 C -0.155 4.155 16 C 0.125 3.875 17 N -0.574 5.574 18 C 0.278 3.722 19 O -0.321 6.321 20 C 0.041 3.959 21 C -0.201 4.201 22 C -0.016 4.016 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.151 0.849 37 H 0.130 0.870 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 -5.220 9.026 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.167 4.167 4 C 0.020 3.980 5 N -0.313 5.313 6 C -0.357 4.357 7 H 0.085 0.915 8 C -0.231 4.231 9 N -0.548 5.548 10 Si 0.743 3.257 11 H -0.230 1.230 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.031 3.969 15 C -0.160 4.160 16 C -0.029 4.029 17 N -0.298 5.298 18 C 0.099 3.901 19 O -0.229 6.229 20 C -0.054 4.054 21 C -0.221 4.221 22 C -0.024 4.024 23 C -0.169 4.169 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.135 0.865 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.175 0.825 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.425 -4.336 8.799 12.303 hybrid contribution -0.313 0.806 -0.993 1.316 sum -7.738 -3.531 7.807 11.545 Atomic orbital electron populations 1.21743 0.95690 1.01897 1.01203 1.21452 0.95996 0.95656 1.02258 1.22058 0.97598 0.96719 1.00353 1.21089 0.92746 0.84675 0.99481 1.44286 1.69189 1.11466 1.06321 1.19363 1.26277 0.99419 0.90633 0.91462 1.24684 0.97839 0.99854 1.00769 1.69798 1.20292 1.18852 1.45837 0.86082 0.78447 0.81003 0.80150 1.23027 1.22055 1.20184 1.20639 0.96060 0.93098 0.87062 1.21642 1.01614 0.96215 0.96504 1.22944 0.92539 0.90693 0.96753 1.67305 1.09779 1.39629 1.13095 1.20119 0.89546 0.89517 0.90904 1.86138 1.54200 1.24351 1.58195 1.22927 1.03069 0.80785 0.98596 1.21063 1.04244 0.91334 1.05472 1.20409 0.91733 0.97160 0.93105 1.20985 1.03949 0.90201 1.01749 0.91344 0.92962 0.94079 0.92320 0.90690 0.93123 0.95183 0.94918 0.91228 0.93912 0.86530 0.93159 0.83184 0.85199 0.93275 0.94151 0.82513 0.89126 0.90382 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.12 -2.89 5.93 30.59 0.18 -2.71 16 3 C -0.13 -4.24 5.23 30.59 0.16 -4.08 16 4 C 0.15 5.26 5.06 86.38 0.44 5.70 16 5 N -0.59 -26.90 2.62 -706.34 -1.85 -28.75 16 6 C -0.23 -11.75 9.16 84.03 0.77 -10.98 16 7 H 0.07 3.53 7.98 -2.91 -0.02 3.51 16 8 C -0.04 -1.97 3.39 84.86 0.29 -1.69 16 9 N -0.90 -48.23 8.55 21.65 0.19 -48.05 16 10 Si 0.91 44.95 29.24 68.60 2.01 46.95 16 11 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 14 C 0.16 6.94 4.91 85.63 0.42 7.36 16 15 C -0.15 -6.69 5.37 -19.77 -0.11 -6.80 16 16 C 0.13 6.03 10.06 84.64 0.85 6.88 16 17 N -0.57 -26.20 9.22 -308.94 -2.85 -29.05 16 18 C 0.28 11.14 7.49 84.78 0.63 11.77 16 19 O -0.32 -11.24 10.48 -89.91 -0.94 -12.18 16 20 C 0.04 1.19 10.38 113.37 1.18 2.37 16 21 C -0.20 -7.06 9.74 22.47 0.22 -6.84 16 22 C -0.02 -0.56 5.91 -19.69 -0.12 -0.68 16 23 C -0.11 -2.97 8.63 71.24 0.61 -2.35 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.72 6.97 -2.39 -0.02 1.70 16 30 H 0.03 1.17 7.81 -2.38 -0.02 1.15 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 2.18 6.12 -2.38 -0.01 2.16 16 33 H 0.25 13.29 8.25 -92.71 -0.76 12.52 16 34 H 0.12 6.00 4.75 -5.24 -0.02 5.98 16 35 H 0.05 1.94 6.30 -2.39 -0.02 1.92 16 36 H 0.15 7.94 4.41 -2.91 -0.01 7.93 16 37 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 39 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 2.16 3.54 -2.39 -0.01 2.15 16 43 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -60.73 336.21 3.78 -56.95 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.98 Total: 18.79 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.24 Total: -4.67 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.52 Total: -105.85 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.94 Total: -12.18 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.01 Total: 46.95 kcal Total: -60.73 3.78 -56.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232352437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.404 kcal (2) G-P(sol) polarization free energy of solvation -60.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds