Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47191 * 2 1 4 4 N 1.46898 * 109.47009 * 182.52576 * 3 2 1 5 5 C 1.46902 * 111.00024 * 199.81524 * 4 3 2 6 6 C 1.50705 * 109.47060 * 66.04695 * 5 4 3 7 7 H 1.08002 * 119.99718 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00201 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00142 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99795 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47147 * 90.00097 * 10 8 6 12 12 H 1.48502 * 109.47113 * 210.00284 * 10 8 6 13 13 H 1.48493 * 109.47246 * 330.00005 * 10 8 6 14 14 C 1.46898 * 111.00139 * 75.86641 * 4 3 2 15 15 C 1.50699 * 109.47152 * 196.51973 * 14 4 3 16 16 C 1.38093 * 120.35066 * 255.10375 * 15 14 4 17 17 N 1.31942 * 120.82953 * 179.97438 * 16 15 14 18 18 C 1.32276 * 121.65015 * 0.02562 * 17 16 15 19 19 O 1.35672 * 119.68648 * 180.02562 * 18 17 16 20 20 C 1.42906 * 116.99919 * 359.97438 * 19 18 17 21 21 C 1.38879 * 120.62828 * 359.71579 * 18 17 16 22 22 C 1.38414 * 119.11498 * 0.53218 * 21 18 17 23 23 C 1.50700 * 120.76161 * 179.74993 * 22 21 18 24 24 H 1.08990 * 109.47553 * 304.87866 * 1 2 3 25 25 H 1.09002 * 109.46966 * 64.87635 * 1 2 3 26 26 H 1.08997 * 109.47606 * 184.87276 * 1 2 3 27 27 H 1.08997 * 109.47200 * 239.99638 * 2 1 3 28 28 H 1.09003 * 109.46552 * 119.99941 * 2 1 3 29 29 H 1.09007 * 109.47034 * 62.52624 * 3 2 1 30 30 H 1.08996 * 109.47461 * 302.52913 * 3 2 1 31 31 H 1.09002 * 109.47347 * 186.04540 * 5 4 3 32 32 H 1.08997 * 109.47246 * 306.05226 * 5 4 3 33 33 H 0.96998 * 119.99797 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.47573 * 76.51454 * 14 4 3 35 35 H 1.08999 * 109.46896 * 316.51537 * 14 4 3 36 36 H 1.07996 * 119.58756 * 0.02562 * 16 15 14 37 37 H 1.08996 * 109.47057 * 179.97438 * 20 19 18 38 38 H 1.08995 * 109.46997 * 300.00166 * 20 19 18 39 39 H 1.09000 * 109.46869 * 60.00271 * 20 19 18 40 40 H 1.08003 * 120.44398 * 180.28603 * 21 18 17 41 41 H 1.08998 * 109.47191 * 264.35828 * 23 22 21 42 42 H 1.08994 * 109.47448 * 144.34938 * 23 22 21 43 43 H 1.09009 * 109.46634 * 24.34724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5077 1.4428 -0.0610 5 6 4.0534 2.7263 0.4005 6 6 3.7556 2.9004 1.8675 7 1 3.2153 2.1340 2.4035 8 6 4.1728 4.0379 2.5255 9 7 3.9133 4.1896 3.8058 10 14 5.1079 5.3630 1.5986 11 1 4.1466 6.3431 1.0324 12 1 6.0335 6.0582 2.5288 13 1 5.8869 4.7412 0.4980 14 6 3.9783 1.1277 -1.4164 15 6 5.4335 0.7393 -1.3653 16 6 6.4062 1.6193 -1.7972 17 7 7.6830 1.2893 -1.7562 18 6 8.0813 0.1118 -1.3039 19 8 9.4048 -0.1857 -1.2791 20 6 10.3043 0.8174 -1.7555 21 6 7.1582 -0.8204 -0.8484 22 6 5.8106 -0.5064 -0.8834 23 6 4.7767 -1.4922 -0.4037 24 1 -0.3634 0.5876 0.8430 25 1 -0.3633 0.4363 -0.9305 26 1 -0.3634 -1.0239 0.0873 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 1.7141 1.9431 0.9118 30 1 1.6401 1.9692 -0.8664 31 1 5.1322 2.7395 0.2447 32 1 3.5950 3.5394 -0.1622 33 1 4.2071 4.9897 4.2688 34 1 3.8580 2.0024 -2.0554 35 1 3.3954 0.2999 -1.8201 36 1 6.1182 2.5901 -2.1726 37 1 11.3285 0.4521 -1.6805 38 1 10.0751 1.0462 -2.7962 39 1 10.1954 1.7189 -1.1526 40 1 7.4871 -1.7792 -0.4755 41 1 4.3880 -2.0534 -1.2534 42 1 3.9611 -0.9562 0.0816 43 1 5.2334 -2.1803 0.3078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232352491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -29.007628 kcal Electronic energy + Delta-G solvation = -22300.925832 eV Core-core repulsion = 19152.456809 eV Total energy + Delta-G solvation = -3148.469023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71257 -39.54115 -38.27236 -34.99284 -34.75169 -33.98914 -32.18631 -29.88744 -29.22748 -27.77965 -26.99823 -25.58635 -23.70526 -22.97664 -22.13382 -21.21837 -19.02688 -18.82685 -18.17444 -17.02564 -16.87585 -16.52885 -16.17629 -15.60089 -15.55488 -15.23193 -15.08483 -14.66606 -14.50967 -14.29820 -13.74654 -13.63590 -13.57524 -13.25526 -13.17872 -12.92293 -12.79133 -12.67066 -12.61123 -12.34959 -12.08825 -12.05569 -11.85142 -11.61291 -11.39672 -11.23318 -10.78671 -10.58615 -10.35268 -9.37377 -8.95585 -8.28607 -6.29264 0.18561 0.32869 1.28804 1.32463 1.41497 2.15316 2.31706 2.70934 3.05492 3.35480 3.36328 3.84762 3.98832 4.06312 4.19902 4.20518 4.36479 4.40636 4.43046 4.52356 4.55724 4.63017 4.64889 4.73296 4.79654 4.84489 4.87922 4.91409 4.98338 5.01007 5.11712 5.14924 5.26007 5.31725 5.48729 5.54205 5.56008 5.59296 5.63023 6.03302 6.24737 6.43826 6.67569 6.77721 6.86304 7.33685 8.87868 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.007006 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.314624 B = 3995.454943 C = 5767.501179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C 0.060 3.940 4 N -0.529 5.529 5 C 0.175 3.825 6 C -0.505 4.505 7 H 0.043 0.957 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.935 3.065 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.255 1.255 14 C 0.102 3.898 15 C -0.164 4.164 16 C 0.130 3.870 17 N -0.562 5.562 18 C 0.297 3.703 19 O -0.320 6.320 20 C 0.038 3.962 21 C -0.201 4.201 22 C 0.014 3.986 23 C -0.120 4.120 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.021 0.979 32 H -0.016 1.016 33 H 0.265 0.735 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.157 0.843 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -10.655 -14.772 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.068 4.068 4 N -0.253 5.253 5 C 0.048 3.952 6 C -0.543 4.543 7 H 0.061 0.939 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.759 3.241 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.179 1.179 14 C -0.026 4.026 15 C -0.167 4.167 16 C -0.025 4.025 17 N -0.287 5.287 18 C 0.118 3.882 19 O -0.228 6.228 20 C -0.056 4.056 21 C -0.222 4.222 22 C 0.006 3.994 23 C -0.176 4.176 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.002 0.998 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.176 0.824 37 H 0.144 0.856 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.174 0.826 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.875 -10.544 -14.519 18.357 hybrid contribution -0.183 1.522 0.021 1.533 sum 3.692 -9.022 -14.498 17.471 Atomic orbital electron populations 1.21708 0.94863 1.02205 1.01628 1.21493 0.95862 0.95101 1.02242 1.22096 0.86632 0.97922 1.00116 1.61830 1.08788 1.32757 1.21920 1.19880 0.94748 0.86701 0.93906 1.21261 1.35081 1.03670 0.94318 0.93895 1.25727 0.96909 1.00538 0.95506 1.70037 1.49013 1.29140 1.10620 0.85891 0.79358 0.79668 0.79141 1.18930 1.21160 1.17930 1.20941 0.90801 1.00876 0.89986 1.20659 0.97305 0.95214 1.03506 1.22451 0.86378 0.98883 0.94786 1.67233 1.20472 1.18814 1.22137 1.20065 0.85316 0.89962 0.92816 1.86189 1.12660 1.43599 1.80357 1.23006 0.92398 0.90847 0.99377 1.21173 0.91530 1.01780 1.07682 1.20261 0.93938 0.94450 0.90788 1.21020 0.97474 0.97010 1.02145 0.94010 0.92088 0.91170 0.90476 0.92678 0.93019 0.94866 0.96117 0.99811 0.92643 0.94015 0.87684 0.82385 0.85636 0.92385 0.93586 0.82572 0.88362 0.89502 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.11 -2.89 5.00 30.59 0.15 -2.73 16 3 C 0.06 2.07 4.80 86.30 0.41 2.49 16 4 N -0.53 -20.04 3.44 -905.38 -3.12 -23.15 16 5 C 0.17 8.22 3.63 85.56 0.31 8.53 16 6 C -0.50 -28.91 8.78 25.60 0.22 -28.69 16 7 H 0.04 2.72 7.56 -2.91 -0.02 2.70 16 8 C 0.01 0.61 5.47 84.65 0.46 1.07 16 9 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 10 Si 0.93 45.14 27.47 68.60 1.88 47.02 16 11 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 14 C 0.10 3.04 4.15 85.56 0.35 3.40 16 15 C -0.16 -5.18 4.72 -19.77 -0.09 -5.28 16 16 C 0.13 4.32 10.07 84.64 0.85 5.17 16 17 N -0.56 -19.27 9.22 -308.94 -2.85 -22.12 16 18 C 0.30 9.64 7.49 84.78 0.63 10.27 16 19 O -0.32 -9.36 10.48 -89.90 -0.94 -10.30 16 20 C 0.04 0.87 10.38 113.37 1.18 2.05 16 21 C -0.20 -5.93 9.72 22.47 0.22 -5.71 16 22 C 0.01 0.40 5.91 -19.69 -0.12 0.28 16 23 C -0.12 -2.82 9.32 71.24 0.66 -2.16 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.68 6.60 -2.39 -0.02 1.66 16 28 H 0.05 1.61 7.88 -2.39 -0.02 1.59 16 29 H 0.05 2.20 6.58 -2.38 -0.02 2.19 16 30 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 31 H 0.02 1.02 5.75 -2.39 -0.01 1.00 16 32 H -0.02 -0.73 7.55 -2.39 -0.02 -0.75 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 34 H 0.04 1.20 7.86 -2.39 -0.02 1.18 16 35 H 0.11 2.53 6.07 -2.39 -0.01 2.51 16 36 H 0.16 4.81 8.00 -2.91 -0.02 4.79 16 37 H 0.13 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 2.37 5.04 -2.39 -0.01 2.35 16 43 H 0.08 1.63 8.07 -2.38 -0.02 1.61 16 Total: -1.00 -69.42 342.93 2.17 -67.24 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.92 Total: 14.50 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.97 Total: -13.87 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.66 Total: -104.60 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.94 Total: -10.30 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -69.42 2.17 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232352491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.236 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds