Wall clock time and date at job start Tue Mar 31 2020 00:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46920 * 2 1 4 4 C 1.53006 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99517 * 269.50416 * 5 4 3 7 7 H 1.08001 * 119.99812 * 325.95991 * 6 5 4 8 8 C 1.38813 * 119.99758 * 145.96709 * 6 5 4 9 9 N 1.31616 * 120.00259 * 336.72441 * 8 6 5 10 10 Si 1.86802 * 119.99811 * 156.73004 * 8 6 5 11 11 H 1.48497 * 109.47225 * 89.99892 * 10 8 6 12 12 H 1.48505 * 109.46808 * 209.99792 * 10 8 6 13 13 H 1.48497 * 109.47064 * 329.98941 * 10 8 6 14 14 C 1.46494 * 120.00111 * 89.49976 * 5 4 3 15 15 C 1.50703 * 109.47156 * 90.00214 * 14 5 4 16 16 C 1.37992 * 119.58844 * 94.99285 * 15 14 5 17 17 C 1.39249 * 119.08994 * 180.02562 * 16 15 14 18 18 O 1.35739 * 120.84670 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99689 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.46841 * 180.02562 * 19 18 17 21 21 C 1.39281 * 118.30347 * 0.25963 * 17 16 15 22 22 C 1.37953 * 119.09598 * 359.50040 * 21 17 16 23 23 N 1.31945 * 119.58591 * 275.02587 * 15 14 5 24 24 H 1.09007 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46795 * 299.99252 * 1 2 3 26 26 H 1.08997 * 109.47520 * 60.00030 * 1 2 3 27 27 H 1.09006 * 109.46745 * 240.00318 * 2 1 3 28 28 H 1.09000 * 109.47517 * 120.00487 * 2 1 3 29 29 H 1.09006 * 109.47152 * 60.00567 * 3 2 1 30 30 H 1.09000 * 109.47423 * 300.00544 * 3 2 1 31 31 H 1.08992 * 109.46972 * 60.00206 * 4 3 2 32 32 H 1.09004 * 109.46843 * 299.99656 * 4 3 2 33 33 H 0.96996 * 120.00680 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47624 * 329.99807 * 14 5 4 35 35 H 1.09003 * 109.47304 * 209.99963 * 14 5 4 36 36 H 1.07998 * 120.45663 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.46803 * 299.99746 * 19 18 17 38 38 H 1.08991 * 109.47241 * 60.00345 * 19 18 17 39 39 H 1.09005 * 109.46913 * 300.00082 * 20 19 18 40 40 H 1.09000 * 109.47370 * 59.99902 * 20 19 18 41 41 H 1.08998 * 109.47120 * 179.97438 * 20 19 18 42 42 H 1.08010 * 120.45405 * 179.72067 * 21 17 16 43 43 H 1.08003 * 119.59033 * 180.27611 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2957 3.4665 -1.1857 7 1 4.6622 2.9117 -2.0368 8 6 4.0654 4.8311 -1.2936 9 7 3.2227 5.4232 -0.4741 10 14 4.9515 5.8272 -2.6021 11 1 4.1401 5.8437 -3.8457 12 1 5.1450 7.2181 -2.1189 13 1 6.2737 5.2120 -2.8817 14 6 4.2926 3.5173 1.2689 15 6 5.7125 3.2816 1.7156 16 6 6.6870 4.2079 1.4052 17 6 7.9957 3.9795 1.8227 18 8 8.9824 4.8666 1.5366 19 6 10.2951 4.5500 2.0042 20 6 11.2651 5.6583 1.5899 21 6 8.2675 2.8145 2.5360 22 6 7.2364 1.9401 2.8106 23 7 6.0083 2.1917 2.3979 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.0614 6.3766 -0.5497 34 1 3.6059 3.1350 2.0242 35 1 4.1266 4.5862 1.1348 36 1 6.4382 5.0979 0.8463 37 1 10.2831 4.4656 3.0909 38 1 10.6171 3.6037 1.5698 39 1 11.2771 5.7432 0.5033 40 1 10.9429 6.6045 2.0247 41 1 12.2663 5.4170 1.9470 42 1 9.2712 2.6003 2.8726 43 1 7.4373 1.0365 3.3670 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232585131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:09 Heat of formation + Delta-G solvation = -2.637594 kcal Electronic energy + Delta-G solvation = -21885.185584 eV Core-core repulsion = 18737.860051 eV Total energy + Delta-G solvation = -3147.325533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.09644 -38.06223 -36.13756 -33.99871 -32.21320 -31.52980 -30.79058 -30.08699 -27.87076 -26.10497 -24.02040 -23.43048 -22.72780 -21.44157 -20.62048 -19.84279 -17.79978 -16.73462 -16.07334 -15.96370 -15.15244 -14.87825 -14.71376 -14.35648 -14.01768 -13.51836 -13.43114 -13.28952 -13.17215 -12.81966 -12.61107 -12.32609 -12.04803 -11.86357 -11.71737 -11.20899 -11.06974 -10.90189 -10.77388 -10.63747 -10.49956 -10.36864 -10.25279 -10.03764 -9.87634 -9.57087 -8.89229 -8.50210 -8.44180 -8.30227 -6.65269 -5.83561 -3.33339 1.73295 1.94532 3.29341 3.35649 3.43912 3.48864 4.37198 4.52710 4.84203 4.87828 4.99288 5.13527 5.21705 5.31451 5.32297 5.43279 5.50431 5.53937 5.68505 5.73804 5.80482 5.83776 5.91248 6.11748 6.15994 6.28491 6.31290 6.42413 6.47779 6.52829 6.55708 6.61010 6.77566 6.80475 6.92628 7.16869 7.21349 7.37615 7.57383 7.64852 7.81139 8.46218 8.77817 9.14153 9.78445 10.35743 11.17578 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.005636 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.703893 B = 4967.042793 C = 6512.046565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.148 3.852 5 N -0.570 5.570 6 C -0.253 4.253 7 H 0.061 0.939 8 C 0.012 3.988 9 N -0.883 5.883 10 Si 0.889 3.111 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.183 3.817 15 C 0.170 3.830 16 C -0.183 4.183 17 C 0.159 3.841 18 O -0.313 6.313 19 C 0.055 3.945 20 C -0.152 4.152 21 C -0.286 4.286 22 C 0.125 3.875 23 N -0.506 5.506 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.256 0.744 34 H 0.046 0.954 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -4.275 6.037 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.288 5.288 6 C -0.383 4.383 7 H 0.079 0.921 8 C -0.188 4.188 9 N -0.525 5.525 10 Si 0.718 3.282 11 H -0.212 1.212 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.056 3.944 15 C 0.031 3.969 16 C -0.205 4.205 17 C 0.106 3.894 18 O -0.226 6.226 19 C -0.021 4.021 20 C -0.209 4.209 21 C -0.308 4.308 22 C -0.033 4.033 23 N -0.219 5.219 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.966 -4.471 6.078 10.972 hybrid contribution 1.488 0.991 -0.788 1.954 sum 9.455 -3.480 5.290 11.379 Atomic orbital electron populations 1.21759 0.96848 1.00330 1.01644 1.21521 0.95009 0.98656 1.00899 1.22128 0.99008 0.93959 1.02074 1.20955 0.91365 0.86720 0.98703 1.43719 1.73182 1.10491 1.01451 1.19075 1.37402 0.91412 0.90370 0.92092 1.25029 0.97220 0.98465 0.98112 1.69955 1.32374 1.10482 1.39689 0.86508 0.80311 0.79699 0.81678 1.21214 1.21274 1.20296 1.20108 0.85102 1.02421 0.86772 1.22930 0.99829 0.86640 0.87477 1.21441 0.89815 1.03907 1.05331 1.19373 0.88626 0.88323 0.93080 1.86073 1.16711 1.45555 1.74234 1.22735 0.81239 0.99221 0.98870 1.21772 0.97550 0.98583 1.02991 1.21937 1.01428 0.98032 1.09398 1.22435 0.88134 0.97372 0.95380 1.67704 1.20618 1.20607 1.13007 0.93783 0.93085 0.92992 0.92825 0.92843 0.92922 0.91974 0.94332 0.93802 0.93361 0.93558 0.86738 0.84513 0.92212 0.92169 0.91470 0.91535 0.90574 0.85716 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.15 3.23 5.67 -4.04 -0.02 3.21 16 5 N -0.57 -14.15 2.43 -174.60 -0.43 -14.57 16 6 C -0.25 -6.81 9.48 -15.06 -0.14 -6.95 16 7 H 0.06 1.67 7.93 -52.49 -0.42 1.25 16 8 C 0.01 0.32 4.94 -17.43 -0.09 0.23 16 9 N -0.88 -24.45 11.34 55.49 0.63 -23.83 16 10 Si 0.89 21.39 29.61 -169.99 -5.03 16.36 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.18 4.37 5.60 -5.20 -0.03 4.34 16 15 C 0.17 3.74 6.36 -82.63 -0.53 3.21 16 16 C -0.18 -3.93 9.68 -39.30 -0.38 -4.31 16 17 C 0.16 2.95 6.74 -38.82 -0.26 2.69 16 18 O -0.31 -5.32 10.15 -18.92 -0.19 -5.51 16 19 C 0.05 0.65 5.49 37.16 0.20 0.85 16 20 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 21 C -0.29 -4.60 9.11 -39.30 -0.36 -4.96 16 22 C 0.13 2.12 11.17 -17.59 -0.20 1.92 16 23 N -0.51 -10.30 10.27 -9.55 -0.10 -10.40 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 32 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.05 1.08 8.07 -51.93 -0.42 0.66 16 35 H 0.12 2.99 5.23 -51.93 -0.27 2.72 16 36 H 0.14 3.10 8.06 -52.49 -0.42 2.68 16 37 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 38 H 0.06 0.66 7.70 -51.93 -0.40 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.12 1.58 6.47 -52.48 -0.34 1.24 16 43 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -29.22 356.12 -8.40 -37.62 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.29 Total: 2.43 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.36 Total: -7.47 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.11 Total: -48.80 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.19 Total: -5.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.22 -8.40 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232585131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds