Wall clock time and date at job start Tue Mar 31 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46920 * 2 1 4 4 C 1.53006 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99517 * 269.50416 * 5 4 3 7 7 H 1.08001 * 119.99812 * 325.95991 * 6 5 4 8 8 C 1.38813 * 119.99758 * 145.96709 * 6 5 4 9 9 N 1.31616 * 120.00259 * 336.72441 * 8 6 5 10 10 Si 1.86802 * 119.99811 * 156.73004 * 8 6 5 11 11 H 1.48497 * 109.47225 * 89.99892 * 10 8 6 12 12 H 1.48505 * 109.46808 * 209.99792 * 10 8 6 13 13 H 1.48497 * 109.47064 * 329.98941 * 10 8 6 14 14 C 1.46494 * 120.00111 * 89.49976 * 5 4 3 15 15 C 1.50703 * 109.47156 * 90.00214 * 14 5 4 16 16 C 1.37992 * 119.58844 * 94.99285 * 15 14 5 17 17 C 1.39249 * 119.08994 * 180.02562 * 16 15 14 18 18 O 1.35739 * 120.84670 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99689 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.46841 * 180.02562 * 19 18 17 21 21 C 1.39281 * 118.30347 * 0.25963 * 17 16 15 22 22 C 1.37953 * 119.09598 * 359.50040 * 21 17 16 23 23 N 1.31945 * 119.58591 * 275.02587 * 15 14 5 24 24 H 1.09007 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46795 * 299.99252 * 1 2 3 26 26 H 1.08997 * 109.47520 * 60.00030 * 1 2 3 27 27 H 1.09006 * 109.46745 * 240.00318 * 2 1 3 28 28 H 1.09000 * 109.47517 * 120.00487 * 2 1 3 29 29 H 1.09006 * 109.47152 * 60.00567 * 3 2 1 30 30 H 1.09000 * 109.47423 * 300.00544 * 3 2 1 31 31 H 1.08992 * 109.46972 * 60.00206 * 4 3 2 32 32 H 1.09004 * 109.46843 * 299.99656 * 4 3 2 33 33 H 0.96996 * 120.00680 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47624 * 329.99807 * 14 5 4 35 35 H 1.09003 * 109.47304 * 209.99963 * 14 5 4 36 36 H 1.07998 * 120.45663 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.46803 * 299.99746 * 19 18 17 38 38 H 1.08991 * 109.47241 * 60.00345 * 19 18 17 39 39 H 1.09005 * 109.46913 * 300.00082 * 20 19 18 40 40 H 1.09000 * 109.47370 * 59.99902 * 20 19 18 41 41 H 1.08998 * 109.47120 * 179.97438 * 20 19 18 42 42 H 1.08010 * 120.45405 * 179.72067 * 21 17 16 43 43 H 1.08003 * 119.59033 * 180.27611 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2957 3.4665 -1.1857 7 1 4.6622 2.9117 -2.0368 8 6 4.0654 4.8311 -1.2936 9 7 3.2227 5.4232 -0.4741 10 14 4.9515 5.8272 -2.6021 11 1 4.1401 5.8437 -3.8457 12 1 5.1450 7.2181 -2.1189 13 1 6.2737 5.2120 -2.8817 14 6 4.2926 3.5173 1.2689 15 6 5.7125 3.2816 1.7156 16 6 6.6870 4.2079 1.4052 17 6 7.9957 3.9795 1.8227 18 8 8.9824 4.8666 1.5366 19 6 10.2951 4.5500 2.0042 20 6 11.2651 5.6583 1.5899 21 6 8.2675 2.8145 2.5360 22 6 7.2364 1.9401 2.8106 23 7 6.0083 2.1917 2.3979 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.0614 6.3766 -0.5497 34 1 3.6059 3.1350 2.0242 35 1 4.1266 4.5862 1.1348 36 1 6.4382 5.0979 0.8463 37 1 10.2831 4.4656 3.0909 38 1 10.6171 3.6037 1.5698 39 1 11.2771 5.7432 0.5033 40 1 10.9429 6.6045 2.0247 41 1 12.2663 5.4170 1.9470 42 1 9.2712 2.6003 2.8726 43 1 7.4373 1.0365 3.3670 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232585131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:08 Heat of formation + Delta-G solvation = -18.357427 kcal Electronic energy + Delta-G solvation = -21885.867247 eV Core-core repulsion = 18737.860051 eV Total energy + Delta-G solvation = -3148.007196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49973 -39.44151 -37.88173 -35.56970 -33.43415 -33.26900 -32.37074 -31.35794 -29.45970 -27.91428 -25.66330 -24.65888 -24.11122 -22.91448 -22.08199 -21.50646 -19.28876 -18.48877 -17.49964 -17.13910 -16.78142 -16.59542 -16.24151 -15.81123 -15.68264 -15.28753 -14.90969 -14.56998 -14.52197 -14.18253 -13.69415 -13.57389 -13.40785 -13.25239 -13.15989 -13.03382 -12.66465 -12.53200 -12.30020 -12.08743 -11.92578 -11.87872 -11.85824 -11.80798 -11.56733 -11.24606 -10.60834 -10.34064 -9.89204 -9.77171 -8.64603 -7.87988 -5.41983 0.26265 0.48185 1.40197 1.44492 1.52920 2.12396 2.47494 2.90604 3.21494 3.62802 3.76666 3.83109 3.99926 4.02261 4.16413 4.19831 4.29897 4.31903 4.39137 4.40924 4.47482 4.61227 4.74247 4.80546 4.89667 4.92274 4.96749 5.05834 5.07332 5.09478 5.11152 5.19582 5.22380 5.23650 5.41122 5.53710 5.55838 5.62289 5.75355 5.79785 6.34352 6.42661 7.11247 7.26641 7.80891 8.34554 9.10514 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.005636 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.703893 B = 4967.042793 C = 6512.046565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.150 3.850 5 N -0.584 5.584 6 C -0.262 4.262 7 H 0.052 0.948 8 C -0.025 4.025 9 N -0.908 5.908 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.279 1.279 14 C 0.192 3.808 15 C 0.156 3.844 16 C -0.213 4.213 17 C 0.160 3.840 18 O -0.334 6.334 19 C 0.041 3.959 20 C -0.150 4.150 21 C -0.267 4.267 22 C 0.127 3.873 23 N -0.525 5.525 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.254 0.746 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.171 0.829 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -6.089 7.109 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.159 4.159 4 C 0.025 3.975 5 N -0.304 5.304 6 C -0.393 4.393 7 H 0.069 0.931 8 C -0.223 4.223 9 N -0.551 5.551 10 Si 0.770 3.230 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.205 1.205 14 C 0.064 3.936 15 C 0.018 3.982 16 C -0.235 4.235 17 C 0.107 3.893 18 O -0.247 6.247 19 C -0.033 4.033 20 C -0.207 4.207 21 C -0.288 4.288 22 C -0.031 4.031 23 N -0.239 5.239 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.188 0.812 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.280 -6.295 7.157 14.018 hybrid contribution 0.943 1.518 -1.018 2.057 sum 11.223 -4.776 6.139 13.655 Atomic orbital electron populations 1.21733 0.95286 1.01981 1.01319 1.21454 0.96358 0.95561 1.01936 1.21949 0.97724 0.96486 0.99784 1.21011 0.92388 0.85356 0.98779 1.43871 1.74071 1.11296 1.01124 1.19163 1.37211 0.91880 0.91003 0.93073 1.25556 0.97773 0.99098 0.99902 1.70059 1.33576 1.10350 1.41163 0.85679 0.79150 0.78306 0.79843 1.20683 1.21332 1.20489 1.19790 0.86813 1.00597 0.86361 1.22372 0.98640 0.87944 0.89242 1.21252 0.91890 1.03388 1.06963 1.19386 0.87982 0.89340 0.92633 1.86070 1.18397 1.45701 1.74531 1.23200 0.79002 1.00791 1.00281 1.21830 0.98604 0.97769 1.02452 1.22353 1.03348 0.96019 1.07101 1.23192 0.86909 0.98688 0.94284 1.67647 1.22887 1.19876 1.13498 0.91092 0.93213 0.93615 0.92012 0.91493 0.94481 0.94893 0.94559 0.93093 0.93650 0.94100 0.89535 0.87437 0.90147 0.90687 0.92436 0.92015 0.87252 0.81214 0.79290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.91 71.98 0.71 -3.22 16 2 C -0.11 -3.56 5.93 30.59 0.18 -3.38 16 3 C -0.12 -4.89 5.54 30.59 0.17 -4.72 16 4 C 0.15 6.66 5.67 86.38 0.49 7.15 16 5 N -0.58 -30.19 2.43 -706.32 -1.72 -31.91 16 6 C -0.26 -14.71 9.48 84.03 0.80 -13.91 16 7 H 0.05 2.91 7.93 -2.91 -0.02 2.89 16 8 C -0.03 -1.42 4.94 84.86 0.42 -1.00 16 9 N -0.91 -52.72 11.34 21.65 0.25 -52.48 16 10 Si 0.94 45.51 29.61 68.60 2.03 47.54 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 14 C 0.19 9.62 5.60 85.64 0.48 10.10 16 15 C 0.16 7.03 6.36 42.48 0.27 7.30 16 16 C -0.21 -9.43 9.68 22.45 0.22 -9.21 16 17 C 0.16 5.77 6.74 22.76 0.15 5.92 16 18 O -0.33 -10.91 10.15 -90.63 -0.92 -11.83 16 19 C 0.04 0.85 5.49 71.98 0.39 1.24 16 20 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 21 C -0.27 -7.63 9.11 22.45 0.20 -7.43 16 22 C 0.13 3.87 11.17 84.60 0.95 4.81 16 23 N -0.52 -20.89 10.27 -184.12 -1.89 -22.78 16 24 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 32 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 35 H 0.09 4.84 5.23 -2.39 -0.01 4.83 16 36 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 37 H 0.08 1.33 7.72 -2.39 -0.02 1.32 16 38 H 0.07 1.33 7.70 -2.39 -0.02 1.31 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.17 3.28 6.47 -2.91 -0.02 3.26 16 43 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.68 356.12 4.88 -61.80 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.96 Total: 17.70 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 6.18 Total: -8.05 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.37 Total: -107.17 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.92 Total: -11.83 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.68 4.88 -61.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232585131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.442 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds