Wall clock time and date at job start Tue Mar 31 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 N 1.46900 * 109.47020 * 180.49557 * 3 2 1 5 5 C 1.46898 * 111.00527 * 299.26927 * 4 3 2 6 6 C 1.50703 * 109.46628 * 293.56303 * 5 4 3 7 7 H 1.07996 * 120.00386 * 354.96334 * 6 5 4 8 8 C 1.37884 * 119.99583 * 174.96381 * 6 5 4 9 9 N 1.31506 * 120.00085 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99648 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46938 * 90.00128 * 10 8 6 12 12 H 1.48503 * 109.46958 * 210.00145 * 10 8 6 13 13 H 1.48497 * 109.47202 * 329.99771 * 10 8 6 14 14 C 1.46906 * 111.00047 * 63.22250 * 4 3 2 15 15 C 1.50704 * 109.46824 * 66.03984 * 14 4 3 16 16 C 1.38254 * 120.39308 * 259.97956 * 15 14 4 17 17 N 1.31841 * 120.88884 * 179.77294 * 16 15 14 18 18 C 1.31847 * 121.77967 * 0.51825 * 17 16 15 19 19 C 1.38704 * 120.67899 * 359.48562 * 18 17 16 20 20 O 1.35921 * 120.46909 * 180.27349 * 19 18 17 21 21 C 1.42899 * 116.99850 * 0.02562 * 20 19 18 22 22 C 1.38532 * 120.38599 * 80.00589 * 15 14 4 23 23 C 1.50703 * 120.81555 * 359.95204 * 22 15 14 24 24 H 1.09000 * 109.46929 * 299.99864 * 1 2 3 25 25 H 1.09000 * 109.47162 * 59.99502 * 1 2 3 26 26 H 1.08999 * 109.47581 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46859 * 239.99387 * 2 1 3 28 28 H 1.09000 * 109.47162 * 120.00498 * 2 1 3 29 29 H 1.09002 * 109.46747 * 60.50100 * 3 2 1 30 30 H 1.09001 * 109.47135 * 300.49752 * 3 2 1 31 31 H 1.08995 * 109.47102 * 53.55871 * 5 4 3 32 32 H 1.09001 * 109.47370 * 173.56197 * 5 4 3 33 33 H 0.97007 * 120.00109 * 180.02562 * 9 8 6 34 34 H 1.09007 * 109.46819 * 306.04743 * 14 4 3 35 35 H 1.08987 * 109.47400 * 186.04208 * 14 4 3 36 36 H 1.08003 * 119.55073 * 0.04756 * 16 15 14 37 37 H 1.07997 * 119.65972 * 179.75745 * 18 17 16 38 38 H 1.09000 * 109.46655 * 299.99639 * 21 20 19 39 39 H 1.08990 * 109.47451 * 59.99845 * 21 20 19 40 40 H 1.09005 * 109.46987 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.46888 * 270.02555 * 23 22 15 42 42 H 1.08996 * 109.46807 * 30.02738 * 23 22 15 43 43 H 1.08999 * 109.47156 * 150.02244 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0120 5 6 4.0452 0.7684 1.1780 6 6 3.7050 1.5723 2.4065 7 1 3.2183 2.5311 2.3068 8 6 4.0153 1.0834 3.6579 9 7 4.6085 -0.0840 3.7794 10 14 3.5943 2.0801 5.1807 11 1 2.2327 1.7170 5.6491 12 1 4.5806 1.7880 6.2518 13 1 3.6350 3.5277 4.8517 14 6 4.0254 0.8280 -1.2424 15 6 3.6571 1.6862 -2.4252 16 6 2.5785 1.3521 -3.2230 17 7 2.2450 2.0983 -4.2574 18 6 2.9246 3.1809 -4.5807 19 6 4.0190 3.5804 -3.8280 20 8 4.7133 4.7003 -4.1618 21 6 4.2613 5.4267 -5.3064 22 6 4.3957 2.8189 -2.7262 23 6 5.5780 3.2168 -1.8806 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6840 1.9536 0.8945 30 1 1.6695 1.9589 -0.8855 31 1 3.6062 -0.2257 1.2613 32 1 5.1281 0.6812 1.0892 33 1 4.8264 -0.4280 4.6598 34 1 3.5899 -0.1639 -1.3636 35 1 5.1101 0.7433 -1.1787 36 1 1.9988 0.4704 -2.9930 37 1 2.6234 3.7650 -5.4377 38 1 4.3035 4.7831 -6.1851 39 1 3.2346 5.7555 -5.1459 40 1 4.9014 6.2952 -5.4616 41 1 5.2453 3.8743 -1.0774 42 1 6.0360 2.3246 -1.4537 43 1 6.3077 3.7393 -2.4991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235466081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:31 Heat of formation + Delta-G solvation = -7.762510 kcal Electronic energy + Delta-G solvation = -22333.073798 eV Core-core repulsion = 19185.526032 eV Total energy + Delta-G solvation = -3147.547766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70724 -38.41880 -37.15767 -33.96464 -32.81327 -31.90594 -30.62230 -27.81211 -27.76651 -26.85994 -26.10826 -23.91840 -22.33430 -22.06609 -21.26850 -19.20923 -17.58227 -17.13502 -16.20711 -16.06652 -15.95866 -15.17423 -14.82587 -14.40208 -14.01762 -13.93000 -13.72919 -13.26221 -13.00731 -12.69173 -12.50681 -12.42776 -12.20998 -11.93143 -11.61103 -11.50596 -11.40064 -11.22410 -11.01686 -10.94987 -10.80901 -10.70235 -10.47973 -9.95941 -9.78246 -9.32692 -9.15601 -8.91434 -8.43294 -8.27597 -7.17902 -6.02910 -4.03557 1.26717 1.45980 3.16133 3.31472 3.38153 3.42384 3.89909 4.43264 4.55982 4.71271 4.87815 4.98014 5.00328 5.06351 5.21544 5.28533 5.32917 5.34955 5.54150 5.56237 5.61425 5.75139 5.87574 5.92348 5.96900 6.09668 6.16003 6.21969 6.33953 6.42300 6.46105 6.51790 6.60342 6.74089 6.77431 6.96230 7.25301 7.28681 7.41872 7.80436 8.06814 8.09405 8.18103 8.53538 9.04478 9.60655 11.07618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.004859 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.312582 B = 5761.485207 C = 6575.715172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.066 3.934 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.088 3.912 15 C -0.077 4.077 16 C 0.069 3.931 17 N -0.459 5.459 18 C 0.006 3.994 19 C 0.068 3.932 20 O -0.309 6.309 21 C 0.026 3.974 22 C -0.049 4.049 23 C -0.102 4.102 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.005 0.995 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 5.456 -15.806 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.249 5.249 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.041 4.041 15 C -0.080 4.080 16 C -0.090 4.090 17 N -0.168 5.168 18 C -0.151 4.151 19 C 0.021 3.979 20 O -0.222 6.222 21 C -0.069 4.069 22 C -0.058 4.058 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.281 5.705 -16.062 17.197 hybrid contribution -0.024 -0.118 1.144 1.150 sum -2.305 5.587 -14.919 16.096 Atomic orbital electron populations 1.21650 0.96462 1.00709 1.01258 1.22170 0.95608 1.00278 1.02143 1.22043 0.88291 0.94509 1.01372 1.62395 1.06603 1.54561 1.01312 1.19809 0.94927 0.93135 0.85700 1.21115 1.38533 1.04599 0.89896 0.91977 1.24950 0.95411 0.95058 0.99026 1.69948 1.41975 1.18299 1.23627 0.86555 0.78005 0.80569 0.82643 1.20803 1.21326 1.19821 1.21015 1.00686 0.93910 0.88472 1.20748 0.94959 0.95313 0.96970 1.22528 0.95536 0.99368 0.91553 1.67476 1.28501 1.04541 1.16317 1.22706 0.94327 0.96844 1.01237 1.19897 0.93545 0.88563 0.95893 1.86076 1.53583 1.35857 1.46647 1.23051 1.00919 0.96050 0.86901 1.19620 0.98833 0.93538 0.93793 1.20617 0.94046 1.02592 0.98556 0.92774 0.93478 0.93572 0.93110 0.90405 0.90133 0.93136 0.97765 0.95700 0.92983 0.93975 0.90003 0.83081 0.83186 0.92751 0.92636 0.88224 0.89818 0.90686 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.16 -2.84 5.28 -26.73 -0.14 -2.98 16 3 C 0.07 1.26 4.92 -3.83 -0.02 1.24 16 4 N -0.53 -10.67 4.69 -237.51 -1.11 -11.78 16 5 C 0.19 4.63 4.50 -4.98 -0.02 4.61 16 6 C -0.50 -13.59 8.41 -34.44 -0.29 -13.88 16 7 H 0.06 1.69 7.33 -52.49 -0.38 1.31 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 10 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.09 1.51 4.35 -4.97 -0.02 1.49 16 15 C -0.08 -1.23 4.58 -104.51 -0.48 -1.71 16 16 C 0.07 1.05 9.82 -17.54 -0.17 0.88 16 17 N -0.46 -7.04 10.36 -13.13 -0.14 -7.18 16 18 C 0.01 0.09 10.22 -17.37 -0.18 -0.09 16 19 C 0.07 0.98 6.68 -39.08 -0.26 0.72 16 20 O -0.31 -3.93 9.68 -19.49 -0.19 -4.12 16 21 C 0.03 0.21 9.82 101.05 0.99 1.20 16 22 C -0.05 -0.77 5.93 -104.18 -0.62 -1.39 16 23 C -0.10 -1.53 9.47 36.01 0.34 -1.19 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.82 6.04 -51.93 -0.31 0.50 16 28 H 0.08 1.60 6.31 -51.93 -0.33 1.27 16 29 H 0.08 1.69 6.97 -51.93 -0.36 1.33 16 30 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.00 0.12 6.01 -51.93 -0.31 -0.19 16 32 H 0.02 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.04 0.70 5.97 -51.93 -0.31 0.39 16 35 H 0.08 1.40 6.31 -51.94 -0.33 1.07 16 36 H 0.15 2.11 7.75 -52.48 -0.41 1.71 16 37 H 0.15 1.60 6.32 -52.49 -0.33 1.27 16 38 H 0.05 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.06 0.40 7.68 -51.93 -0.40 0.01 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.14 6.27 -51.93 -0.33 0.81 16 43 H 0.06 0.85 7.62 -51.93 -0.40 0.45 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -29.79 339.89 -7.79 -37.58 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.59 Total: 0.72 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.60 Total: -11.41 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.51 Total: -44.24 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.79 -7.79 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235466081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.821 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds