Wall clock time and date at job start Tue Mar 31 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 N 1.46900 * 109.47020 * 180.49557 * 3 2 1 5 5 C 1.46898 * 111.00527 * 299.26927 * 4 3 2 6 6 C 1.50703 * 109.46628 * 293.56303 * 5 4 3 7 7 H 1.07996 * 120.00386 * 354.96334 * 6 5 4 8 8 C 1.37884 * 119.99583 * 174.96381 * 6 5 4 9 9 N 1.31506 * 120.00085 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99648 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46938 * 90.00128 * 10 8 6 12 12 H 1.48503 * 109.46958 * 210.00145 * 10 8 6 13 13 H 1.48497 * 109.47202 * 329.99771 * 10 8 6 14 14 C 1.46906 * 111.00047 * 63.22250 * 4 3 2 15 15 C 1.50704 * 109.46824 * 66.03984 * 14 4 3 16 16 C 1.38254 * 120.39308 * 259.97956 * 15 14 4 17 17 N 1.31841 * 120.88884 * 179.77294 * 16 15 14 18 18 C 1.31847 * 121.77967 * 0.51825 * 17 16 15 19 19 C 1.38704 * 120.67899 * 359.48562 * 18 17 16 20 20 O 1.35921 * 120.46909 * 180.27349 * 19 18 17 21 21 C 1.42899 * 116.99850 * 0.02562 * 20 19 18 22 22 C 1.38532 * 120.38599 * 80.00589 * 15 14 4 23 23 C 1.50703 * 120.81555 * 359.95204 * 22 15 14 24 24 H 1.09000 * 109.46929 * 299.99864 * 1 2 3 25 25 H 1.09000 * 109.47162 * 59.99502 * 1 2 3 26 26 H 1.08999 * 109.47581 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46859 * 239.99387 * 2 1 3 28 28 H 1.09000 * 109.47162 * 120.00498 * 2 1 3 29 29 H 1.09002 * 109.46747 * 60.50100 * 3 2 1 30 30 H 1.09001 * 109.47135 * 300.49752 * 3 2 1 31 31 H 1.08995 * 109.47102 * 53.55871 * 5 4 3 32 32 H 1.09001 * 109.47370 * 173.56197 * 5 4 3 33 33 H 0.97007 * 120.00109 * 180.02562 * 9 8 6 34 34 H 1.09007 * 109.46819 * 306.04743 * 14 4 3 35 35 H 1.08987 * 109.47400 * 186.04208 * 14 4 3 36 36 H 1.08003 * 119.55073 * 0.04756 * 16 15 14 37 37 H 1.07997 * 119.65972 * 179.75745 * 18 17 16 38 38 H 1.09000 * 109.46655 * 299.99639 * 21 20 19 39 39 H 1.08990 * 109.47451 * 59.99845 * 21 20 19 40 40 H 1.09005 * 109.46987 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.46888 * 270.02555 * 23 22 15 42 42 H 1.08996 * 109.46807 * 30.02738 * 23 22 15 43 43 H 1.08999 * 109.47156 * 150.02244 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0120 5 6 4.0452 0.7684 1.1780 6 6 3.7050 1.5723 2.4065 7 1 3.2183 2.5311 2.3068 8 6 4.0153 1.0834 3.6579 9 7 4.6085 -0.0840 3.7794 10 14 3.5943 2.0801 5.1807 11 1 2.2327 1.7170 5.6491 12 1 4.5806 1.7880 6.2518 13 1 3.6350 3.5277 4.8517 14 6 4.0254 0.8280 -1.2424 15 6 3.6571 1.6862 -2.4252 16 6 2.5785 1.3521 -3.2230 17 7 2.2450 2.0983 -4.2574 18 6 2.9246 3.1809 -4.5807 19 6 4.0190 3.5804 -3.8280 20 8 4.7133 4.7003 -4.1618 21 6 4.2613 5.4267 -5.3064 22 6 4.3957 2.8189 -2.7262 23 6 5.5780 3.2168 -1.8806 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.6840 1.9536 0.8945 30 1 1.6695 1.9589 -0.8855 31 1 3.6062 -0.2257 1.2613 32 1 5.1281 0.6812 1.0892 33 1 4.8264 -0.4280 4.6598 34 1 3.5899 -0.1639 -1.3636 35 1 5.1101 0.7433 -1.1787 36 1 1.9988 0.4704 -2.9930 37 1 2.6234 3.7650 -5.4377 38 1 4.3035 4.7831 -6.1851 39 1 3.2346 5.7555 -5.1459 40 1 4.9014 6.2952 -5.4616 41 1 5.2453 3.8743 -1.0774 42 1 6.0360 2.3246 -1.4537 43 1 6.3077 3.7393 -2.4991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235466081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:31 Heat of formation + Delta-G solvation = -26.617442 kcal Electronic energy + Delta-G solvation = -22333.891409 eV Core-core repulsion = 19185.526032 eV Total energy + Delta-G solvation = -3148.365377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82045 -39.60774 -38.52605 -35.23908 -34.76796 -33.32324 -31.94555 -29.28887 -28.66971 -28.33662 -27.42779 -25.59203 -23.73882 -23.41359 -22.55378 -20.73140 -18.63880 -18.32864 -18.18623 -17.18744 -17.00385 -16.73923 -16.40001 -15.96453 -15.29018 -15.16996 -15.04997 -14.53764 -14.26743 -14.20341 -13.85644 -13.69606 -13.58845 -13.23171 -12.89625 -12.81767 -12.68928 -12.61555 -12.55581 -12.35102 -12.28599 -12.25560 -12.21370 -11.79081 -11.31093 -11.27784 -10.56458 -10.38977 -10.17037 -9.34268 -8.85034 -8.15651 -6.23693 0.11801 0.29839 1.41530 1.42308 1.53376 2.27396 2.42328 2.73968 3.17445 3.44519 3.56371 3.66108 3.79970 3.97294 4.03550 4.16380 4.23961 4.27919 4.42686 4.46816 4.53235 4.56351 4.63024 4.67782 4.73758 4.78113 4.87119 4.92291 4.99794 5.07668 5.14191 5.20402 5.25642 5.36174 5.42417 5.46310 5.54563 5.60075 5.71675 6.11802 6.29214 6.38005 6.67280 6.92282 6.96122 7.45160 8.94453 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.004859 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.312582 B = 5761.485207 C = 6575.715172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.073 3.927 4 N -0.532 5.532 5 C 0.206 3.794 6 C -0.514 4.514 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.093 3.907 15 C -0.087 4.087 16 C 0.064 3.936 17 N -0.469 5.469 18 C 0.011 3.989 19 C 0.071 3.929 20 O -0.323 6.323 21 C 0.014 3.986 22 C -0.068 4.068 23 C -0.094 4.094 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.066 0.934 31 H -0.016 1.016 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 6.740 -17.462 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.056 4.056 4 N -0.254 5.254 5 C 0.080 3.920 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.193 1.193 14 C -0.035 4.035 15 C -0.089 4.089 16 C -0.093 4.093 17 N -0.179 5.179 18 C -0.146 4.146 19 C 0.024 3.976 20 O -0.236 6.236 21 C -0.080 4.080 22 C -0.077 4.077 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.002 0.998 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.200 0.800 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.356 7.000 -17.739 19.364 hybrid contribution 0.341 -0.427 1.510 1.606 sum -3.016 6.573 -16.229 17.767 Atomic orbital electron populations 1.21606 0.94143 1.01913 1.01822 1.22048 0.97611 0.98720 1.01009 1.21964 0.87345 0.95471 1.00776 1.62245 1.07597 1.54452 1.01137 1.19422 0.93299 0.92170 0.87065 1.21383 1.38176 1.04507 0.91151 0.92576 1.25746 0.95264 0.96027 1.02042 1.70062 1.43046 1.19798 1.24368 0.85543 0.77942 0.79184 0.78923 1.20067 1.20886 1.19279 1.20941 1.00370 0.94481 0.87676 1.20549 0.95921 0.95661 0.96769 1.22644 0.95312 0.99834 0.91550 1.67545 1.28912 1.05136 1.16263 1.23213 0.93492 0.96306 1.01617 1.19909 0.93589 0.88866 0.95276 1.86069 1.53770 1.35288 1.48448 1.23424 1.02106 0.96611 0.85828 1.19770 0.99101 0.94071 0.94767 1.20512 0.94401 1.01928 0.98238 0.93468 0.91616 0.92085 0.91628 0.94063 0.92624 0.91539 0.99794 0.98130 0.92868 0.93313 0.90499 0.82036 0.79971 0.91195 0.91593 0.86014 0.91520 0.91570 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.15 -5.40 5.28 30.59 0.16 -5.24 16 3 C 0.07 2.78 4.92 86.30 0.42 3.20 16 4 N -0.53 -22.14 4.69 -905.36 -4.25 -26.39 16 5 C 0.21 10.56 4.50 85.56 0.38 10.95 16 6 C -0.51 -28.58 8.41 25.60 0.22 -28.37 16 7 H 0.06 3.13 7.33 -2.91 -0.02 3.11 16 8 C 0.01 0.41 5.46 84.66 0.46 0.87 16 9 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 10 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 14 C 0.09 3.26 4.35 85.56 0.37 3.63 16 15 C -0.09 -2.71 4.58 -19.79 -0.09 -2.80 16 16 C 0.06 1.86 9.82 84.70 0.83 2.70 16 17 N -0.47 -13.26 10.36 -195.44 -2.02 -15.28 16 18 C 0.01 0.28 10.22 84.80 0.87 1.15 16 19 C 0.07 1.91 6.68 22.60 0.15 2.06 16 20 O -0.32 -7.47 9.68 -92.66 -0.90 -8.36 16 21 C 0.01 0.18 9.82 113.37 1.11 1.30 16 22 C -0.07 -2.09 5.93 -19.58 -0.12 -2.21 16 23 C -0.09 -2.86 9.47 71.24 0.67 -2.18 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 2.07 6.04 -2.39 -0.01 2.05 16 28 H 0.04 1.74 6.31 -2.39 -0.02 1.73 16 29 H 0.06 2.39 6.97 -2.39 -0.02 2.37 16 30 H 0.07 2.33 6.47 -2.39 -0.02 2.32 16 31 H -0.02 -0.85 6.01 -2.39 -0.01 -0.87 16 32 H 0.00 0.03 7.92 -2.39 -0.02 0.02 16 33 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 34 H 0.05 1.63 5.97 -2.38 -0.01 1.61 16 35 H 0.08 2.73 6.31 -2.39 -0.02 2.71 16 36 H 0.16 4.20 7.75 -2.91 -0.02 4.18 16 37 H 0.18 3.15 6.32 -2.91 -0.02 3.13 16 38 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 39 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16 40 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.07 2.08 6.27 -2.39 -0.01 2.06 16 43 H 0.08 2.04 7.62 -2.39 -0.02 2.02 16 Total: -1.00 -64.70 339.89 2.31 -62.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.00 Total: 14.40 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 6.16 Total: -18.13 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -5.98 Total: -96.61 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.90 Total: -8.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.70 2.31 -62.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235466081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.779 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds