Wall clock time and date at job start Tue Mar 31 2020 00:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47579 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47334 * 185.52249 * 4 3 2 6 6 C 1.36939 * 119.99866 * 96.50379 * 5 4 3 7 7 H 1.08005 * 119.99814 * 165.43720 * 6 5 4 8 8 C 1.38813 * 120.00460 * 345.44358 * 6 5 4 9 9 N 1.31619 * 119.99548 * 331.26011 * 8 6 5 10 10 Si 1.86798 * 120.00214 * 151.25906 * 8 6 5 11 11 H 1.48502 * 109.46833 * 94.99790 * 10 8 6 12 12 H 1.48507 * 109.46795 * 214.99595 * 10 8 6 13 13 H 1.48501 * 109.47205 * 334.99409 * 10 8 6 14 14 C 1.46495 * 120.00420 * 276.50734 * 5 4 3 15 15 C 1.50698 * 109.47384 * 263.69085 * 14 5 4 16 16 C 1.38257 * 120.38846 * 263.51124 * 15 14 5 17 17 N 1.31852 * 120.88703 * 179.76084 * 16 15 14 18 18 C 1.31835 * 121.77971 * 0.52713 * 17 16 15 19 19 C 1.38707 * 120.68442 * 359.47300 * 18 17 16 20 20 O 1.35909 * 120.47524 * 180.28150 * 19 18 17 21 21 C 1.42903 * 117.00110 * 359.97438 * 20 19 18 22 22 C 1.38534 * 120.39296 * 83.52733 * 15 14 5 23 23 C 1.50699 * 120.81250 * 359.95993 * 22 15 14 24 24 H 1.08999 * 109.47310 * 59.99499 * 1 2 3 25 25 H 1.08996 * 109.46597 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46671 * 299.99476 * 1 2 3 27 27 H 1.09003 * 109.47390 * 240.00636 * 2 1 3 28 28 H 1.09002 * 109.47583 * 120.00045 * 2 1 3 29 29 H 1.09005 * 109.47089 * 59.99927 * 3 2 1 30 30 H 1.08999 * 109.47323 * 300.00492 * 3 2 1 31 31 H 1.09000 * 109.46845 * 65.52090 * 4 3 2 32 32 H 1.09003 * 109.46888 * 305.52459 * 4 3 2 33 33 H 0.97001 * 120.00265 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.47843 * 143.68702 * 14 5 4 35 35 H 1.09000 * 109.47004 * 23.68549 * 14 5 4 36 36 H 1.07996 * 119.55698 * 0.03833 * 16 15 14 37 37 H 1.08002 * 119.65942 * 179.75444 * 18 17 16 38 38 H 1.09001 * 109.46960 * 60.00240 * 21 20 19 39 39 H 1.08999 * 109.47403 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46966 * 300.00270 * 21 20 19 41 41 H 1.09003 * 109.47361 * 263.20338 * 23 22 15 42 42 H 1.08998 * 109.47061 * 23.19822 * 23 22 15 43 43 H 1.08998 * 109.47152 * 143.19692 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8173 0.1323 6 6 4.4138 3.3016 1.3628 7 1 4.9871 4.2138 1.4392 8 6 4.0374 2.6203 2.5122 9 7 2.9384 1.8960 2.5177 10 14 5.0905 2.7313 4.0510 11 1 4.5612 3.7990 4.9371 12 1 5.0576 1.4313 4.7681 13 1 6.4899 3.0518 3.6711 14 6 4.1665 3.6739 -1.0512 15 6 5.5798 3.6341 -1.5728 16 6 6.4828 4.6206 -1.2221 17 7 7.7230 4.5929 -1.6690 18 6 8.1508 3.6380 -2.4710 19 6 7.3036 2.6135 -2.8668 20 8 7.7507 1.6282 -3.6891 21 6 9.1130 1.7059 -4.1138 22 6 5.9894 2.6088 -2.4095 23 6 5.0352 1.5149 -2.8142 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 1.0169 -0.9362 32 1 3.9337 0.8453 0.8355 33 1 2.6755 1.4196 3.3206 34 1 3.9068 4.6981 -0.7835 35 1 3.4845 3.3159 -1.8224 36 1 6.1694 5.4222 -0.5698 37 1 9.1729 3.6510 -2.8197 38 1 9.7673 1.6796 -3.2425 39 1 9.3396 0.8613 -4.7644 40 1 9.2710 2.6365 -4.6589 41 1 5.1778 0.6502 -2.1661 42 1 4.0103 1.8738 -2.7209 43 1 5.2274 1.2294 -3.8485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235471642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:15 Heat of formation + Delta-G solvation = 12.622056 kcal Electronic energy + Delta-G solvation = -22550.863703 eV Core-core repulsion = 19404.199878 eV Total energy + Delta-G solvation = -3146.663825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.41104 -38.00430 -36.39765 -33.96103 -33.15010 -31.45528 -30.08506 -28.24845 -27.59184 -27.07782 -25.63980 -23.49427 -22.09205 -21.72334 -20.41018 -19.67022 -17.51035 -16.89408 -16.37471 -15.82202 -15.79557 -15.13502 -14.24596 -14.13059 -13.88111 -13.66359 -13.42228 -13.04293 -12.93477 -12.62544 -12.46877 -12.30871 -11.83959 -11.74581 -11.50259 -11.32548 -11.29443 -11.28679 -10.89339 -10.65396 -10.45732 -10.12018 -10.07372 -9.94689 -9.69956 -9.13284 -9.04225 -8.62567 -8.35831 -8.02560 -6.84758 -5.77157 -3.09519 1.58858 1.71244 3.34050 3.39395 3.48637 3.54014 4.18625 4.55224 4.81351 4.92341 5.08261 5.10736 5.24627 5.34886 5.40250 5.43617 5.52545 5.66747 5.81673 5.84509 5.90262 5.93751 6.01520 6.03208 6.20690 6.33716 6.44590 6.46034 6.55340 6.63865 6.75255 6.78955 6.88902 6.92844 6.97669 7.15768 7.25509 7.47051 7.63432 7.76824 8.18688 8.33845 8.39316 9.23821 9.84606 10.30953 11.24011 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.006285 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.049907 B = 4453.809135 C = 5683.610608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.167 3.833 5 N -0.583 5.583 6 C -0.258 4.258 7 H 0.070 0.930 8 C 0.009 3.991 9 N -0.882 5.882 10 Si 0.884 3.116 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.184 3.816 15 C -0.090 4.090 16 C 0.076 3.924 17 N -0.461 5.461 18 C 0.000 4.000 19 C 0.066 3.934 20 O -0.313 6.313 21 C 0.027 3.973 22 C -0.067 4.067 23 C -0.104 4.104 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.251 0.749 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 -1.566 -11.688 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.042 3.958 5 N -0.302 5.302 6 C -0.386 4.386 7 H 0.088 0.912 8 C -0.190 4.190 9 N -0.526 5.526 10 Si 0.713 3.287 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.055 3.945 15 C -0.095 4.095 16 C -0.082 4.082 17 N -0.171 5.171 18 C -0.158 4.158 19 C 0.019 3.981 20 O -0.225 6.225 21 C -0.068 4.068 22 C -0.076 4.076 23 C -0.160 4.160 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.696 -1.201 -11.364 12.355 hybrid contribution 0.414 -0.605 0.742 1.043 sum 5.110 -1.806 -10.622 11.925 Atomic orbital electron populations 1.21723 0.97496 0.99762 1.01160 1.21372 0.94301 0.99348 1.00036 1.22303 0.98408 0.94205 1.01951 1.20852 0.92285 0.84952 0.97716 1.44052 1.75074 1.09226 1.01835 1.19124 1.27836 1.09050 0.82606 0.91168 1.24654 0.96518 1.00805 0.97004 1.70126 1.19655 1.35074 1.27749 0.86569 0.81417 0.76963 0.83739 1.21684 1.21676 1.20695 1.19689 0.88359 0.96227 0.90180 1.21991 1.01690 0.92707 0.93126 1.22511 0.88154 0.98834 0.98710 1.67445 1.16959 1.23975 1.08674 1.22605 0.99706 0.92880 1.00613 1.19886 0.94253 0.90055 0.93938 1.86042 1.28693 1.45662 1.62143 1.23011 0.81248 1.02854 0.99710 1.19546 0.91865 0.97944 0.98216 1.20790 0.98023 0.96388 1.00839 0.93855 0.94349 0.92832 0.94542 0.92398 0.86937 0.96563 0.96195 0.91516 0.93845 0.92386 0.92524 0.82944 0.83590 0.92749 0.88459 0.92854 0.90560 0.90619 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.11 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.13 -2.74 4.96 -26.73 -0.13 -2.87 16 4 C 0.17 3.73 4.81 -4.05 -0.02 3.71 16 5 N -0.58 -13.49 2.53 -174.62 -0.44 -13.93 16 6 C -0.26 -6.69 9.60 -15.06 -0.14 -6.83 16 7 H 0.07 1.82 7.98 -52.48 -0.42 1.40 16 8 C 0.01 0.23 4.68 -17.43 -0.08 0.15 16 9 N -0.88 -23.56 8.89 55.49 0.49 -23.07 16 10 Si 0.88 21.40 29.64 -169.99 -5.04 16.36 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.18 3.58 5.35 -5.20 -0.03 3.56 16 15 C -0.09 -1.68 5.43 -104.51 -0.57 -2.25 16 16 C 0.08 1.42 10.83 -17.54 -0.19 1.23 16 17 N -0.46 -8.47 10.36 -13.13 -0.14 -8.61 16 18 C 0.00 -0.01 10.22 -17.38 -0.18 -0.18 16 19 C 0.07 1.09 6.68 -39.07 -0.26 0.82 16 20 O -0.31 -4.52 9.80 -19.45 -0.19 -4.71 16 21 C 0.03 0.26 9.82 101.05 0.99 1.26 16 22 C -0.07 -1.18 5.93 -104.18 -0.62 -1.80 16 23 C -0.10 -1.65 7.98 36.01 0.29 -1.36 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.11 2.80 5.92 -51.93 -0.31 2.49 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.40 4.10 -51.93 -0.21 0.19 16 32 H 0.07 1.70 6.41 -51.93 -0.33 1.37 16 33 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.06 1.11 8.00 -51.93 -0.42 0.70 16 35 H 0.06 1.02 6.20 -51.93 -0.32 0.70 16 36 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 37 H 0.15 1.92 6.32 -52.49 -0.33 1.58 16 38 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 41 H 0.08 1.27 6.90 -51.93 -0.36 0.91 16 42 H 0.08 1.19 5.38 -51.93 -0.28 0.91 16 43 H 0.06 0.88 7.83 -51.93 -0.41 0.47 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -28.52 338.44 -7.64 -36.16 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.70 Total: 1.45 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.73 Total: -8.75 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.08 Total: -45.61 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.52 -7.64 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235471642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.781 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds