Wall clock time and date at job start Tue Mar 31 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46901 * 109.47050 * 174.87475 * 3 2 1 5 5 C 1.46896 * 111.00013 * 199.71656 * 4 3 2 6 6 C 1.50703 * 109.47175 * 66.04473 * 5 4 3 7 7 H 1.07997 * 119.99702 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00176 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99834 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47179 * 89.99994 * 10 8 6 12 12 H 1.48499 * 109.47153 * 209.99676 * 10 8 6 13 13 H 1.48495 * 109.47615 * 329.99937 * 10 8 6 14 14 C 1.46899 * 110.99767 * 75.76374 * 4 3 2 15 15 C 1.50707 * 109.47049 * 199.75914 * 14 4 3 16 16 C 1.38254 * 120.38451 * 264.45224 * 15 14 4 17 17 N 1.31850 * 120.88730 * 179.97438 * 16 15 14 18 18 C 1.31838 * 121.77719 * 359.70701 * 17 16 15 19 19 C 1.38713 * 120.68364 * 0.58430 * 18 17 16 20 20 O 1.35911 * 120.47389 * 179.70924 * 19 18 17 21 21 C 1.42908 * 117.00116 * 359.71554 * 20 19 18 22 22 C 1.52997 * 109.47104 * 180.02562 * 21 20 19 23 23 C 1.38530 * 120.39055 * 84.42888 * 15 14 4 24 24 H 1.09003 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47362 * 300.00268 * 1 2 3 26 26 H 1.09001 * 109.47081 * 59.99891 * 1 2 3 27 27 H 1.09001 * 109.47362 * 239.99732 * 2 1 3 28 28 H 1.09001 * 109.47081 * 120.00109 * 2 1 3 29 29 H 1.09003 * 109.47007 * 54.87593 * 3 2 1 30 30 H 1.08999 * 109.47193 * 294.87759 * 3 2 1 31 31 H 1.09001 * 109.47135 * 186.05026 * 5 4 3 32 32 H 1.09005 * 109.47157 * 306.04669 * 5 4 3 33 33 H 0.96991 * 119.99800 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47418 * 79.75814 * 14 4 3 35 35 H 1.08996 * 109.47447 * 319.75414 * 14 4 3 36 36 H 1.08004 * 119.55807 * 359.95532 * 16 15 14 37 37 H 1.08001 * 119.66141 * 180.28551 * 18 17 16 38 38 H 1.08994 * 109.46834 * 60.00304 * 21 20 19 39 39 H 1.08999 * 109.46502 * 300.00397 * 21 20 19 40 40 H 1.08994 * 109.47211 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46839 * 299.99875 * 22 21 20 42 42 H 1.08992 * 109.47442 * 59.99547 * 22 21 20 43 43 H 1.07995 * 120.81518 * 0.04364 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1237 5 6 3.9911 2.7491 0.5904 6 6 3.5119 2.9898 1.9988 7 1 2.9064 2.2475 2.4975 8 6 3.8475 4.1573 2.6511 9 7 3.4298 4.3672 3.8804 10 14 4.8956 5.4408 1.7888 11 1 4.0159 6.3917 1.0627 12 1 5.7000 6.1801 2.7946 13 1 5.8040 4.7713 0.8236 14 6 4.1398 1.0682 -1.1459 15 6 5.5518 0.6108 -0.8843 16 6 6.6079 1.4938 -1.0123 17 7 7.8470 1.1044 -0.7853 18 6 8.1313 -0.1312 -0.4241 19 6 7.1258 -1.0760 -0.2809 20 8 7.4244 -2.3501 0.0860 21 6 8.8031 -2.6561 0.3048 22 6 8.9417 -4.1258 0.7068 23 6 5.8066 -0.6991 -0.5124 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6037 1.9821 0.8406 30 1 1.7536 1.9292 -0.9323 31 1 5.0809 2.7582 0.5708 32 1 3.6094 3.5342 -0.0624 33 1 3.6656 5.1886 4.3391 34 1 4.1547 1.9293 -1.8140 35 1 3.5757 0.2587 -1.6091 36 1 6.4154 2.5162 -1.3023 37 1 9.1582 -0.4120 -0.2425 38 1 9.1938 -2.0229 1.1012 39 1 9.3650 -2.4758 -0.6116 40 1 9.9931 -4.3591 0.8741 41 1 8.3796 -4.3064 1.6231 42 1 8.5510 -4.7588 -0.0898 43 1 5.0011 -1.4104 -0.4051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236838418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:22 Heat of formation + Delta-G solvation = -9.000606 kcal Electronic energy + Delta-G solvation = -21790.593907 eV Core-core repulsion = 18642.992454 eV Total energy + Delta-G solvation = -3147.601454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51597 -38.40236 -37.08692 -33.33798 -32.86999 -32.33810 -31.39314 -29.81544 -28.03114 -26.35972 -24.36189 -23.56495 -23.13774 -21.43273 -21.04308 -19.77222 -17.89021 -16.94407 -16.62214 -16.40058 -16.24451 -15.08724 -14.82859 -14.50205 -14.03194 -13.79940 -13.63764 -13.44384 -12.92767 -12.88814 -12.78892 -12.56437 -12.39392 -12.23879 -11.90794 -11.78253 -11.55313 -11.43580 -11.09306 -11.04612 -10.78465 -10.70347 -10.25906 -9.99160 -9.80601 -9.30759 -9.20879 -9.14391 -8.56774 -8.24954 -7.44997 -6.04397 -4.01452 1.32314 1.53743 3.08252 3.29177 3.37712 3.40271 3.96202 4.43302 4.60865 4.71518 4.73397 4.80434 4.92875 5.04015 5.10951 5.18767 5.28541 5.32414 5.40288 5.45449 5.50497 5.57755 5.60334 5.74265 5.81715 5.88000 5.94060 6.03860 6.15424 6.20403 6.24734 6.43491 6.51884 6.64219 6.70474 6.73191 6.90313 6.98257 7.31703 7.60668 7.87636 8.01255 8.16900 8.65140 9.04143 9.57494 11.08652 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.005434 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.899143 B = 5151.797136 C = 6363.177990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.060 3.940 4 N -0.522 5.522 5 C 0.159 3.841 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.089 3.911 15 C -0.069 4.069 16 C 0.072 3.928 17 N -0.452 5.452 18 C 0.007 3.993 19 C 0.075 3.925 20 O -0.312 6.312 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.087 4.087 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.020 0.980 31 H 0.032 0.968 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.848 -13.239 -10.938 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.068 4.068 4 N -0.246 5.246 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.190 1.190 14 C -0.039 4.039 15 C -0.072 4.072 16 C -0.087 4.087 17 N -0.161 5.161 18 C -0.151 4.151 19 C 0.028 3.972 20 O -0.225 6.225 21 C -0.023 4.023 22 C -0.208 4.208 23 C -0.114 4.114 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.546 -13.033 -10.485 17.963 hybrid contribution -0.035 0.951 -0.706 1.185 sum 6.511 -12.082 -11.191 17.709 Atomic orbital electron populations 1.21725 0.96365 1.00886 1.01712 1.21534 0.94693 0.97639 1.01764 1.22109 0.87943 0.95908 1.00826 1.61953 1.05065 1.33112 1.24430 1.20268 0.96045 0.84053 0.96352 1.21006 1.32951 1.04033 0.96625 0.90097 1.24878 0.95681 0.97902 0.94728 1.69888 1.46085 1.26317 1.11596 0.86920 0.81199 0.82172 0.79880 1.20322 1.21155 1.18969 1.21024 0.90463 0.99715 0.92726 1.20683 0.97048 0.92818 0.96612 1.22558 0.87222 0.99744 0.99148 1.67489 1.22591 1.16417 1.09596 1.22750 0.98844 0.89621 1.03899 1.19978 0.94937 0.84731 0.97587 1.86062 1.27671 1.25508 1.83279 1.22792 0.80961 0.97882 1.00712 1.21762 1.02503 0.93727 1.02818 1.20703 0.93910 0.96529 1.00219 0.93272 0.92451 0.93324 0.93193 0.91218 0.88821 0.96142 0.95045 0.99804 0.92692 0.94045 0.90318 0.83034 0.83147 0.91823 0.92071 0.90422 0.91377 0.91593 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.15 0.37 -1.57 16 2 C -0.12 -1.79 5.98 -26.73 -0.16 -1.95 16 3 C 0.06 1.09 4.79 -3.82 -0.02 1.08 16 4 N -0.52 -10.51 4.34 -237.51 -1.03 -11.54 16 5 C 0.16 3.79 3.61 -4.98 -0.02 3.78 16 6 C -0.51 -14.35 8.79 -34.44 -0.30 -14.65 16 7 H 0.08 2.49 7.56 -52.49 -0.40 2.09 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 10 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 14 C 0.09 1.47 4.97 -4.97 -0.02 1.45 16 15 C -0.07 -1.16 5.04 -104.50 -0.53 -1.69 16 16 C 0.07 1.26 9.58 -17.54 -0.17 1.09 16 17 N -0.45 -7.93 10.36 -13.12 -0.14 -8.06 16 18 C 0.01 0.10 10.22 -17.37 -0.18 -0.07 16 19 C 0.07 1.14 6.71 -39.07 -0.26 0.88 16 20 O -0.31 -4.23 10.15 -19.46 -0.20 -4.43 16 21 C 0.05 0.50 5.47 37.16 0.20 0.70 16 22 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 23 C -0.09 -1.38 9.83 -39.14 -0.38 -1.77 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.68 6.89 -51.93 -0.36 0.32 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.98 6.58 -51.93 -0.34 1.64 16 30 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 31 H 0.03 0.78 5.40 -51.93 -0.28 0.50 16 32 H -0.02 -0.37 7.55 -51.93 -0.39 -0.76 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 35 H 0.08 1.11 6.54 -51.93 -0.34 0.77 16 36 H 0.15 2.55 7.99 -52.48 -0.42 2.13 16 37 H 0.15 1.83 6.32 -52.49 -0.33 1.50 16 38 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -31.91 347.15 -8.25 -40.16 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.03 Total: 0.04 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.19 Total: -11.55 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.39 Total: -46.49 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.91 -8.25 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236838418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.158 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds