Wall clock time and date at job start Tue Mar 31 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46901 * 109.47050 * 174.87475 * 3 2 1 5 5 C 1.46896 * 111.00013 * 199.71656 * 4 3 2 6 6 C 1.50703 * 109.47175 * 66.04473 * 5 4 3 7 7 H 1.07997 * 119.99702 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00176 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99834 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47179 * 89.99994 * 10 8 6 12 12 H 1.48499 * 109.47153 * 209.99676 * 10 8 6 13 13 H 1.48495 * 109.47615 * 329.99937 * 10 8 6 14 14 C 1.46899 * 110.99767 * 75.76374 * 4 3 2 15 15 C 1.50707 * 109.47049 * 199.75914 * 14 4 3 16 16 C 1.38254 * 120.38451 * 264.45224 * 15 14 4 17 17 N 1.31850 * 120.88730 * 179.97438 * 16 15 14 18 18 C 1.31838 * 121.77719 * 359.70701 * 17 16 15 19 19 C 1.38713 * 120.68364 * 0.58430 * 18 17 16 20 20 O 1.35911 * 120.47389 * 179.70924 * 19 18 17 21 21 C 1.42908 * 117.00116 * 359.71554 * 20 19 18 22 22 C 1.52997 * 109.47104 * 180.02562 * 21 20 19 23 23 C 1.38530 * 120.39055 * 84.42888 * 15 14 4 24 24 H 1.09003 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47362 * 300.00268 * 1 2 3 26 26 H 1.09001 * 109.47081 * 59.99891 * 1 2 3 27 27 H 1.09001 * 109.47362 * 239.99732 * 2 1 3 28 28 H 1.09001 * 109.47081 * 120.00109 * 2 1 3 29 29 H 1.09003 * 109.47007 * 54.87593 * 3 2 1 30 30 H 1.08999 * 109.47193 * 294.87759 * 3 2 1 31 31 H 1.09001 * 109.47135 * 186.05026 * 5 4 3 32 32 H 1.09005 * 109.47157 * 306.04669 * 5 4 3 33 33 H 0.96991 * 119.99800 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47418 * 79.75814 * 14 4 3 35 35 H 1.08996 * 109.47447 * 319.75414 * 14 4 3 36 36 H 1.08004 * 119.55807 * 359.95532 * 16 15 14 37 37 H 1.08001 * 119.66141 * 180.28551 * 18 17 16 38 38 H 1.08994 * 109.46834 * 60.00304 * 21 20 19 39 39 H 1.08999 * 109.46502 * 300.00397 * 21 20 19 40 40 H 1.08994 * 109.47211 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46839 * 299.99875 * 22 21 20 42 42 H 1.08992 * 109.47442 * 59.99547 * 22 21 20 43 43 H 1.07995 * 120.81518 * 0.04364 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1237 5 6 3.9911 2.7491 0.5904 6 6 3.5119 2.9898 1.9988 7 1 2.9064 2.2475 2.4975 8 6 3.8475 4.1573 2.6511 9 7 3.4298 4.3672 3.8804 10 14 4.8956 5.4408 1.7888 11 1 4.0159 6.3917 1.0627 12 1 5.7000 6.1801 2.7946 13 1 5.8040 4.7713 0.8236 14 6 4.1398 1.0682 -1.1459 15 6 5.5518 0.6108 -0.8843 16 6 6.6079 1.4938 -1.0123 17 7 7.8470 1.1044 -0.7853 18 6 8.1313 -0.1312 -0.4241 19 6 7.1258 -1.0760 -0.2809 20 8 7.4244 -2.3501 0.0860 21 6 8.8031 -2.6561 0.3048 22 6 8.9417 -4.1258 0.7068 23 6 5.8066 -0.6991 -0.5124 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6037 1.9821 0.8406 30 1 1.7536 1.9292 -0.9323 31 1 5.0809 2.7582 0.5708 32 1 3.6094 3.5342 -0.0624 33 1 3.6656 5.1886 4.3391 34 1 4.1547 1.9293 -1.8140 35 1 3.5757 0.2587 -1.6091 36 1 6.4154 2.5162 -1.3023 37 1 9.1582 -0.4120 -0.2425 38 1 9.1938 -2.0229 1.1012 39 1 9.3650 -2.4758 -0.6116 40 1 9.9931 -4.3591 0.8741 41 1 8.3796 -4.3064 1.6231 42 1 8.5510 -4.7588 -0.0898 43 1 5.0011 -1.4104 -0.4051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236838418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:22 Heat of formation + Delta-G solvation = -30.052377 kcal Electronic energy + Delta-G solvation = -21791.506781 eV Core-core repulsion = 18642.992454 eV Total energy + Delta-G solvation = -3148.514327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68180 -39.56443 -38.51005 -34.89968 -34.53672 -33.47279 -32.66276 -30.91190 -29.86288 -27.63350 -25.79186 -24.81628 -24.22146 -22.88633 -22.31783 -21.25203 -19.14211 -18.83880 -17.79780 -17.67028 -17.14515 -16.68198 -16.32310 -16.18428 -15.34931 -15.03821 -14.88735 -14.72052 -14.46432 -14.12965 -14.00926 -13.76471 -13.55861 -13.48343 -13.19509 -13.11951 -12.80561 -12.63330 -12.55692 -12.40570 -12.21886 -11.85971 -11.83103 -11.66360 -11.42032 -11.30333 -10.78375 -10.45220 -10.44157 -9.42360 -9.01872 -8.28437 -6.30272 0.10041 0.30455 1.31563 1.35194 1.44788 2.12436 2.33282 2.70154 3.05621 3.33645 3.50718 3.67392 3.82085 4.00715 4.06020 4.08839 4.16045 4.17506 4.30823 4.36923 4.41026 4.50361 4.62610 4.66408 4.75176 4.82155 4.86088 4.95108 4.95666 4.98688 5.05826 5.09789 5.25155 5.26367 5.28507 5.45008 5.49858 5.53147 5.56961 6.00600 6.27151 6.39537 6.64679 6.76127 6.93180 7.32837 8.88224 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.005434 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.899143 B = 5151.797136 C = 6363.177990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.062 3.938 4 N -0.537 5.537 5 C 0.172 3.828 6 C -0.510 4.510 7 H 0.038 0.962 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.938 3.062 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.250 1.250 14 C 0.093 3.907 15 C -0.079 4.079 16 C 0.052 3.948 17 N -0.472 5.472 18 C 0.004 3.996 19 C 0.077 3.923 20 O -0.322 6.322 21 C 0.039 3.961 22 C -0.148 4.148 23 C -0.097 4.097 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.027 0.973 32 H -0.012 1.012 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.179 0.821 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -14.278 -13.044 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.066 4.066 4 N -0.261 5.261 5 C 0.044 3.956 6 C -0.549 4.549 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.762 3.238 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.174 1.174 14 C -0.035 4.035 15 C -0.081 4.081 16 C -0.106 4.106 17 N -0.181 5.181 18 C -0.154 4.154 19 C 0.030 3.970 20 O -0.235 6.235 21 C -0.035 4.035 22 C -0.204 4.204 23 C -0.124 4.124 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.170 0.830 37 H 0.196 0.804 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.700 -14.095 -12.613 20.422 hybrid contribution -0.379 1.105 0.001 1.168 sum 7.321 -12.991 -12.612 19.530 Atomic orbital electron populations 1.21697 0.94692 1.02261 1.01634 1.21459 0.96087 0.95235 1.01971 1.22087 0.86853 0.97848 0.99811 1.61832 1.06225 1.30834 1.27229 1.19963 0.95533 0.86278 0.93786 1.21254 1.31919 1.02993 0.98717 0.94362 1.25771 0.97171 1.00374 0.95378 1.70043 1.48033 1.27308 1.13508 0.85846 0.79660 0.79345 0.78976 1.18849 1.21032 1.17405 1.21091 0.90415 1.00969 0.91011 1.20712 0.96972 0.93180 0.97255 1.22659 0.87676 1.00091 1.00153 1.67489 1.22712 1.17568 1.10370 1.23202 1.00274 0.88949 1.02943 1.20036 0.94742 0.85488 0.96771 1.86073 1.30202 1.24426 1.82820 1.23171 0.79228 0.99295 1.01818 1.21798 1.04053 0.92211 1.02383 1.20914 0.94802 0.96534 1.00148 0.91153 0.94051 0.91924 0.90709 0.93151 0.92884 0.94435 0.95453 0.99397 0.92561 0.93000 0.87591 0.83023 0.80369 0.91407 0.90316 0.87903 0.92181 0.91426 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.11 -3.18 5.98 30.59 0.18 -2.99 16 3 C 0.06 2.24 4.79 86.30 0.41 2.65 16 4 N -0.54 -21.43 4.34 -905.35 -3.93 -25.36 16 5 C 0.17 8.19 3.61 85.56 0.31 8.50 16 6 C -0.51 -29.78 8.79 25.60 0.22 -29.56 16 7 H 0.04 2.49 7.56 -2.91 -0.02 2.47 16 8 C 0.01 0.61 5.47 84.65 0.46 1.07 16 9 N -0.95 -60.15 13.96 21.45 0.30 -59.86 16 10 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 13 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 14 C 0.09 2.89 4.97 85.56 0.43 3.32 16 15 C -0.08 -2.55 5.04 -19.79 -0.10 -2.65 16 16 C 0.05 1.77 9.58 84.69 0.81 2.59 16 17 N -0.47 -15.98 10.36 -195.43 -2.02 -18.01 16 18 C 0.00 0.13 10.22 84.81 0.87 0.99 16 19 C 0.08 2.23 6.71 22.60 0.15 2.38 16 20 O -0.32 -8.14 10.15 -92.55 -0.94 -9.08 16 21 C 0.04 0.66 5.47 71.98 0.39 1.06 16 22 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 23 C -0.10 -2.96 9.83 22.56 0.22 -2.74 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.80 6.89 -2.39 -0.02 1.79 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.34 6.58 -2.39 -0.02 2.33 16 30 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 31 H 0.03 1.34 5.40 -2.39 -0.01 1.32 16 32 H -0.01 -0.54 7.55 -2.38 -0.02 -0.56 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.05 1.52 7.91 -2.39 -0.02 1.50 16 35 H 0.11 2.68 6.54 -2.39 -0.02 2.67 16 36 H 0.15 4.98 7.99 -2.91 -0.02 4.96 16 37 H 0.18 3.90 6.32 -2.91 -0.02 3.88 16 38 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 39 H 0.08 1.07 7.69 -2.39 -0.02 1.05 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.86 347.15 2.02 -68.84 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.92 Total: 15.95 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.82 Total: -19.35 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -5.66 Total: -103.22 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.94 Total: -9.08 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -70.86 2.02 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236838418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.783 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds