Wall clock time and date at job start Tue Mar 31 2020 00:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.52994 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00182 * 272.51995 * 5 4 3 7 7 H 1.07996 * 120.00224 * 176.99156 * 6 5 4 8 8 C 1.38815 * 119.99642 * 356.99892 * 6 5 4 9 9 N 1.31617 * 120.00378 * 29.60430 * 8 6 5 10 10 Si 1.86804 * 119.99652 * 209.59941 * 8 6 5 11 11 H 1.48504 * 109.46836 * 84.99317 * 10 8 6 12 12 H 1.48496 * 109.47129 * 204.99031 * 10 8 6 13 13 H 1.48493 * 109.47241 * 324.99308 * 10 8 6 14 14 C 1.46502 * 120.00002 * 92.52300 * 5 4 3 15 15 C 1.50693 * 109.47155 * 269.99985 * 14 5 4 16 16 C 1.38257 * 120.39302 * 270.02458 * 15 14 5 17 17 N 1.31844 * 120.88844 * 179.97438 * 16 15 14 18 18 C 1.31843 * 121.78202 * 359.70048 * 17 16 15 19 19 C 1.38699 * 120.68083 * 0.58603 * 18 17 16 20 20 O 1.35915 * 120.47387 * 179.70480 * 19 18 17 21 21 C 1.42899 * 116.99776 * 359.72245 * 20 19 18 22 22 C 1.52997 * 109.47064 * 180.02562 * 21 20 19 23 23 C 1.38535 * 120.38785 * 89.99863 * 15 14 5 24 24 H 1.09008 * 109.46942 * 60.00393 * 1 2 3 25 25 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47253 * 300.00148 * 1 2 3 27 27 H 1.09000 * 109.47550 * 240.00045 * 2 1 3 28 28 H 1.09008 * 109.46942 * 119.99607 * 2 1 3 29 29 H 1.09006 * 109.47199 * 59.99539 * 3 2 1 30 30 H 1.08996 * 109.46834 * 300.00108 * 3 2 1 31 31 H 1.09000 * 109.47162 * 60.00352 * 4 3 2 32 32 H 1.08996 * 109.47763 * 300.00083 * 4 3 2 33 33 H 0.96996 * 120.00234 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.46888 * 149.99881 * 14 5 4 35 35 H 1.08998 * 109.46616 * 30.00238 * 14 5 4 36 36 H 1.08004 * 119.55121 * 359.95074 * 16 15 14 37 37 H 1.07998 * 119.65753 * 180.29002 * 18 17 16 38 38 H 1.08996 * 109.47256 * 60.00305 * 21 20 19 39 39 H 1.09007 * 109.47128 * 299.99794 * 21 20 19 40 40 H 1.09006 * 109.46885 * 59.99961 * 22 21 20 41 41 H 1.09002 * 109.47457 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47064 * 300.00298 * 22 21 20 43 43 H 1.07997 * 120.81457 * 0.04488 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2379 3.4860 -1.1851 7 1 4.5513 4.5195 -1.1840 8 6 4.0170 2.8288 -2.3877 9 7 3.1324 1.8565 -2.4536 10 14 4.9752 3.3247 -3.9126 11 1 6.2805 2.6167 -3.9290 12 1 4.1992 2.9603 -5.1251 13 1 5.2077 4.7912 -3.8960 14 6 4.3546 3.4965 1.2673 15 6 3.1180 4.2003 1.7635 16 6 2.8635 5.5090 1.3972 17 7 1.7844 6.1340 1.8252 18 6 0.9047 5.5430 2.6096 19 6 1.0941 4.2331 3.0245 20 8 0.1876 3.6299 3.8379 21 6 -0.9434 4.4066 4.2375 22 6 -1.8448 3.5661 5.1440 23 6 2.2225 3.5435 2.5916 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.9783 1.3971 -3.2938 34 1 5.1507 4.2251 1.1143 35 1 4.6735 2.7592 2.0040 36 1 3.5583 6.0263 0.7521 37 1 0.0302 6.0859 2.9361 38 1 -1.5024 4.7155 3.3543 39 1 -0.6046 5.2892 4.7802 40 1 -1.2855 3.2575 6.0273 41 1 -2.7073 4.1586 5.4492 42 1 -2.1835 2.6832 4.6017 43 1 2.3960 2.5213 2.8939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236846073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:32 Heat of formation + Delta-G solvation = 10.912753 kcal Electronic energy + Delta-G solvation = -22472.067005 eV Core-core repulsion = 19325.329059 eV Total energy + Delta-G solvation = -3146.737946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.22405 -38.05390 -36.33170 -33.61168 -32.62920 -32.05438 -30.51168 -29.55570 -27.97137 -25.95737 -24.05186 -23.26914 -22.90551 -21.48429 -20.39507 -19.84004 -17.65742 -16.76976 -16.34111 -16.11213 -16.06892 -15.09052 -14.14870 -13.97362 -13.78616 -13.52611 -13.39763 -13.25290 -12.87234 -12.76601 -12.57859 -12.37242 -11.87129 -11.69720 -11.56595 -11.52050 -11.38043 -10.97182 -10.89856 -10.70776 -10.48240 -10.13709 -10.10475 -9.85990 -9.75030 -9.28677 -8.99374 -8.76755 -8.20295 -7.98234 -6.99760 -5.82944 -3.05362 1.64846 1.81757 3.28128 3.39981 3.48099 3.49009 4.26841 4.52754 4.82967 4.84105 4.92002 5.14160 5.18129 5.26551 5.40106 5.46520 5.51619 5.60677 5.67202 5.82689 5.84788 5.86621 5.93587 5.99457 6.06657 6.33188 6.40452 6.47547 6.55534 6.58684 6.72914 6.79488 6.91035 6.96815 7.01869 7.25253 7.31546 7.55860 7.68877 7.82311 8.15585 8.29289 8.46299 9.19153 9.80929 10.24707 11.19424 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.005741 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.969898 B = 4876.041130 C = 5874.385729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.167 3.833 5 N -0.586 5.586 6 C -0.255 4.255 7 H 0.078 0.922 8 C 0.006 3.994 9 N -0.882 5.882 10 Si 0.891 3.109 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.185 3.815 15 C -0.091 4.091 16 C 0.074 3.926 17 N -0.457 5.457 18 C -0.007 4.007 19 C 0.072 3.928 20 O -0.315 6.315 21 C 0.053 3.947 22 C -0.151 4.151 23 C -0.101 4.101 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.005 0.995 33 H 0.252 0.748 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 1.193 11.908 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.042 3.958 5 N -0.304 5.304 6 C -0.383 4.383 7 H 0.096 0.904 8 C -0.193 4.193 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.086 4.086 17 N -0.165 5.165 18 C -0.165 4.165 19 C 0.025 3.975 20 O -0.228 6.228 21 C -0.022 4.022 22 C -0.208 4.208 23 C -0.129 4.129 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.874 1.724 11.558 13.080 hybrid contribution 0.052 -0.408 -0.698 0.810 sum -5.822 1.316 10.861 12.393 Atomic orbital electron populations 1.21722 0.97645 0.99688 1.01072 1.21391 0.94182 0.99519 1.00051 1.22230 0.98508 0.93827 1.01531 1.21144 0.92224 0.84043 0.98396 1.44559 1.75129 1.10550 1.00151 1.19269 1.39444 0.96451 0.83149 0.90399 1.24711 0.98544 0.98657 0.97340 1.70256 1.30302 1.26856 1.25251 0.86461 0.80674 0.78045 0.82791 1.21543 1.22105 1.20696 1.19876 0.91085 0.94966 0.88435 1.22151 1.00639 0.94466 0.92465 1.22449 0.94791 0.92432 0.98881 1.67429 1.02361 1.38091 1.08668 1.22569 1.00621 0.92132 1.01210 1.19993 0.90916 0.93216 0.93357 1.86050 1.32585 1.41267 1.62891 1.22729 0.86288 0.94729 0.98457 1.21759 0.98585 1.00845 0.99576 1.20703 0.92601 1.00267 0.99288 0.93078 0.94323 0.93865 0.92315 0.94506 0.95760 0.88602 0.89126 0.97695 0.93715 0.91824 0.92885 0.83113 0.83803 0.92112 0.92232 0.91643 0.90567 0.91499 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.11 -2.19 5.93 -26.73 -0.16 -2.35 16 3 C -0.12 -2.71 4.98 -26.73 -0.13 -2.84 16 4 C 0.17 3.83 4.99 -4.04 -0.02 3.81 16 5 N -0.59 -13.63 2.52 -174.61 -0.44 -14.07 16 6 C -0.25 -6.54 9.68 -15.06 -0.15 -6.68 16 7 H 0.08 1.97 7.98 -52.49 -0.42 1.55 16 8 C 0.01 0.15 4.97 -17.43 -0.09 0.06 16 9 N -0.88 -23.62 8.36 55.49 0.46 -23.16 16 10 Si 0.89 20.98 29.64 -169.99 -5.04 15.94 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.18 3.57 5.86 -5.20 -0.03 3.54 16 15 C -0.09 -1.73 5.42 -104.51 -0.57 -2.29 16 16 C 0.07 1.41 10.86 -17.54 -0.19 1.22 16 17 N -0.46 -8.67 10.36 -13.13 -0.14 -8.81 16 18 C -0.01 -0.13 10.22 -17.38 -0.18 -0.30 16 19 C 0.07 1.24 6.71 -39.07 -0.26 0.98 16 20 O -0.31 -4.84 10.15 -19.47 -0.20 -5.04 16 21 C 0.05 0.60 5.47 37.16 0.20 0.80 16 22 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 23 C -0.10 -1.84 7.78 -39.13 -0.30 -2.15 16 24 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.02 0.53 5.66 -51.93 -0.29 0.24 16 30 H 0.10 2.52 6.31 -51.93 -0.33 2.20 16 31 H 0.09 2.33 5.81 -51.93 -0.30 2.03 16 32 H 0.00 0.10 7.86 -51.93 -0.41 -0.31 16 33 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.06 1.16 7.99 -51.93 -0.41 0.74 16 35 H 0.05 0.93 7.83 -51.93 -0.41 0.53 16 36 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 37 H 0.14 2.01 6.32 -52.49 -0.33 1.68 16 38 H 0.06 0.65 7.67 -51.93 -0.40 0.26 16 39 H 0.06 0.59 7.69 -51.93 -0.40 0.19 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 2.32 7.88 -52.49 -0.41 1.90 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -28.16 345.94 -8.31 -36.47 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.05 Total: 2.70 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.12 Total: -9.27 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.11 Total: -46.04 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.20 Total: -5.04 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.04 Total: 15.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.16 -8.31 -36.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236846073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.388 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds