Wall clock time and date at job start Tue Mar 31 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.52994 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00182 * 272.51995 * 5 4 3 7 7 H 1.07996 * 120.00224 * 176.99156 * 6 5 4 8 8 C 1.38815 * 119.99642 * 356.99892 * 6 5 4 9 9 N 1.31617 * 120.00378 * 29.60430 * 8 6 5 10 10 Si 1.86804 * 119.99652 * 209.59941 * 8 6 5 11 11 H 1.48504 * 109.46836 * 84.99317 * 10 8 6 12 12 H 1.48496 * 109.47129 * 204.99031 * 10 8 6 13 13 H 1.48493 * 109.47241 * 324.99308 * 10 8 6 14 14 C 1.46502 * 120.00002 * 92.52300 * 5 4 3 15 15 C 1.50693 * 109.47155 * 269.99985 * 14 5 4 16 16 C 1.38257 * 120.39302 * 270.02458 * 15 14 5 17 17 N 1.31844 * 120.88844 * 179.97438 * 16 15 14 18 18 C 1.31843 * 121.78202 * 359.70048 * 17 16 15 19 19 C 1.38699 * 120.68083 * 0.58603 * 18 17 16 20 20 O 1.35915 * 120.47387 * 179.70480 * 19 18 17 21 21 C 1.42899 * 116.99776 * 359.72245 * 20 19 18 22 22 C 1.52997 * 109.47064 * 180.02562 * 21 20 19 23 23 C 1.38535 * 120.38785 * 89.99863 * 15 14 5 24 24 H 1.09008 * 109.46942 * 60.00393 * 1 2 3 25 25 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47253 * 300.00148 * 1 2 3 27 27 H 1.09000 * 109.47550 * 240.00045 * 2 1 3 28 28 H 1.09008 * 109.46942 * 119.99607 * 2 1 3 29 29 H 1.09006 * 109.47199 * 59.99539 * 3 2 1 30 30 H 1.08996 * 109.46834 * 300.00108 * 3 2 1 31 31 H 1.09000 * 109.47162 * 60.00352 * 4 3 2 32 32 H 1.08996 * 109.47763 * 300.00083 * 4 3 2 33 33 H 0.96996 * 120.00234 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.46888 * 149.99881 * 14 5 4 35 35 H 1.08998 * 109.46616 * 30.00238 * 14 5 4 36 36 H 1.08004 * 119.55121 * 359.95074 * 16 15 14 37 37 H 1.07998 * 119.65753 * 180.29002 * 18 17 16 38 38 H 1.08996 * 109.47256 * 60.00305 * 21 20 19 39 39 H 1.09007 * 109.47128 * 299.99794 * 21 20 19 40 40 H 1.09006 * 109.46885 * 59.99961 * 22 21 20 41 41 H 1.09002 * 109.47457 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47064 * 300.00298 * 22 21 20 43 43 H 1.07997 * 120.81457 * 0.04488 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2379 3.4860 -1.1851 7 1 4.5513 4.5195 -1.1840 8 6 4.0170 2.8288 -2.3877 9 7 3.1324 1.8565 -2.4536 10 14 4.9752 3.3247 -3.9126 11 1 6.2805 2.6167 -3.9290 12 1 4.1992 2.9603 -5.1251 13 1 5.2077 4.7912 -3.8960 14 6 4.3546 3.4965 1.2673 15 6 3.1180 4.2003 1.7635 16 6 2.8635 5.5090 1.3972 17 7 1.7844 6.1340 1.8252 18 6 0.9047 5.5430 2.6096 19 6 1.0941 4.2331 3.0245 20 8 0.1876 3.6299 3.8379 21 6 -0.9434 4.4066 4.2375 22 6 -1.8448 3.5661 5.1440 23 6 2.2225 3.5435 2.5916 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 2.9783 1.3971 -3.2938 34 1 5.1507 4.2251 1.1143 35 1 4.6735 2.7592 2.0040 36 1 3.5583 6.0263 0.7521 37 1 0.0302 6.0859 2.9361 38 1 -1.5024 4.7155 3.3543 39 1 -0.6046 5.2892 4.7802 40 1 -1.2855 3.2575 6.0273 41 1 -2.7073 4.1586 5.4492 42 1 -2.1835 2.6832 4.6017 43 1 2.3960 2.5213 2.8939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236846073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:30 Heat of formation + Delta-G solvation = -3.294666 kcal Electronic energy + Delta-G solvation = -22472.683084 eV Core-core repulsion = 19325.329059 eV Total energy + Delta-G solvation = -3147.354026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.56039 -39.33077 -38.03520 -35.19551 -34.24351 -33.19020 -32.09119 -30.86059 -29.59811 -27.60660 -25.56249 -24.57159 -24.25040 -22.94666 -21.88149 -21.56016 -18.93907 -18.55518 -17.69144 -17.53002 -17.12838 -16.90642 -15.86029 -15.36194 -15.32849 -15.12320 -14.85296 -14.64233 -14.27999 -13.98124 -13.53941 -13.52584 -13.37274 -13.30198 -13.18337 -13.08710 -12.75145 -12.46682 -12.31690 -12.23876 -11.90470 -11.81307 -11.71932 -11.68455 -11.42065 -11.07219 -10.47196 -10.30221 -10.04813 -9.33390 -8.84738 -7.78600 -5.01703 0.24882 0.39499 1.50463 1.55332 1.59604 2.18133 2.56634 2.88522 3.28444 3.60241 3.75243 3.81656 3.98901 4.05897 4.14722 4.18502 4.34437 4.35297 4.37991 4.44422 4.53443 4.58019 4.79202 4.81615 4.91563 4.95305 4.97005 5.07331 5.07853 5.10197 5.24944 5.27525 5.33002 5.45105 5.53320 5.60066 5.66110 5.71824 5.95403 6.27681 6.33174 6.38399 7.04188 7.25607 7.95505 8.35186 9.21730 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.005741 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.969898 B = 4876.041130 C = 5874.385729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C -0.105 4.105 4 C 0.171 3.829 5 N -0.600 5.600 6 C -0.257 4.257 7 H 0.076 0.924 8 C -0.040 4.040 9 N -0.900 5.900 10 Si 0.942 3.058 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.278 1.278 14 C 0.184 3.816 15 C -0.096 4.096 16 C 0.057 3.943 17 N -0.472 5.472 18 C -0.006 4.006 19 C 0.076 3.924 20 O -0.324 6.324 21 C 0.040 3.960 22 C -0.146 4.146 23 C -0.110 4.110 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.244 0.756 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 1.348 13.812 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.145 4.145 4 C 0.047 3.953 5 N -0.320 5.320 6 C -0.387 4.387 7 H 0.094 0.906 8 C -0.236 4.236 9 N -0.546 5.546 10 Si 0.772 3.228 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.203 1.203 14 C 0.057 3.943 15 C -0.102 4.102 16 C -0.101 4.101 17 N -0.181 5.181 18 C -0.164 4.164 19 C 0.029 3.971 20 O -0.238 6.238 21 C -0.034 4.034 22 C -0.203 4.203 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.924 1.905 13.496 15.288 hybrid contribution 0.290 -0.394 -1.107 1.210 sum -6.634 1.511 12.390 14.135 Atomic orbital electron populations 1.21649 0.95961 1.01282 1.00562 1.21330 0.95673 0.97503 1.00236 1.21971 0.98010 0.95233 0.99289 1.20982 0.92602 0.84066 0.97692 1.44601 1.75647 1.10849 1.00874 1.19444 1.38615 0.96367 0.84226 0.90580 1.25240 0.99504 0.99498 0.99352 1.70417 1.31252 1.27998 1.24967 0.85649 0.79235 0.77721 0.80161 1.21759 1.23152 1.20286 1.19985 0.91459 0.95515 0.87317 1.21983 1.00282 0.94609 0.93320 1.22531 0.95332 0.92836 0.99423 1.67451 1.02713 1.38579 1.09399 1.23074 1.00868 0.92350 1.00078 1.20014 0.90929 0.93103 0.93059 1.86062 1.33269 1.42274 1.62147 1.23137 0.85323 0.95605 0.99350 1.21796 0.98936 1.00715 0.98889 1.20829 0.93022 1.00541 0.99309 0.94582 0.91680 0.93328 0.93760 0.92570 0.95700 0.92807 0.92124 0.95842 0.94634 0.91041 0.90988 0.83156 0.80760 0.91580 0.90557 0.91518 0.87829 0.92163 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.11 -4.14 5.93 30.59 0.18 -3.95 16 3 C -0.11 -4.71 4.98 30.59 0.15 -4.56 16 4 C 0.17 7.90 4.99 86.38 0.43 8.33 16 5 N -0.60 -27.98 2.52 -706.36 -1.78 -29.76 16 6 C -0.26 -13.34 9.68 84.03 0.81 -12.53 16 7 H 0.08 3.88 7.98 -2.91 -0.02 3.86 16 8 C -0.04 -2.14 4.97 84.86 0.42 -1.72 16 9 N -0.90 -49.64 8.36 21.65 0.18 -49.45 16 10 Si 0.94 44.05 29.64 68.60 2.03 46.08 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.18 6.98 5.86 85.63 0.50 7.48 16 15 C -0.10 -3.59 5.42 -19.79 -0.11 -3.70 16 16 C 0.06 2.16 10.86 84.70 0.92 3.08 16 17 N -0.47 -17.41 10.36 -195.44 -2.02 -19.43 16 18 C -0.01 -0.18 10.22 84.80 0.87 0.69 16 19 C 0.08 2.48 6.71 22.60 0.15 2.64 16 20 O -0.32 -9.19 10.15 -92.59 -0.94 -10.13 16 21 C 0.04 0.78 5.47 71.98 0.39 1.17 16 22 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 23 C -0.11 -3.85 7.78 22.56 0.18 -3.67 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.02 1.08 5.66 -2.38 -0.01 1.06 16 30 H 0.05 2.89 6.31 -2.39 -0.02 2.88 16 31 H 0.06 3.18 5.81 -2.39 -0.01 3.17 16 32 H 0.02 0.97 7.86 -2.39 -0.02 0.95 16 33 H 0.24 13.36 8.31 -92.71 -0.77 12.59 16 34 H 0.07 2.56 7.99 -2.39 -0.02 2.54 16 35 H 0.07 2.43 7.83 -2.39 -0.02 2.41 16 36 H 0.15 5.55 8.06 -2.91 -0.02 5.52 16 37 H 0.18 4.34 6.32 -2.91 -0.02 4.32 16 38 H 0.07 1.22 7.67 -2.39 -0.02 1.20 16 39 H 0.08 1.23 7.69 -2.38 -0.02 1.21 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 4.59 7.88 -2.91 -0.02 4.56 16 Total: -1.00 -60.77 345.94 4.80 -55.97 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.97 Total: 18.66 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 6.36 Total: -11.93 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.62 Total: -98.65 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.94 Total: -10.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.77 4.80 -55.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236846073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.672 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds