Wall clock time and date at job start Tue Mar 31 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 H 1.09002 * 109.47123 * 55.00689 * 3 2 1 5 5 N 1.46902 * 109.47404 * 295.00343 * 3 2 1 6 6 C 1.53000 * 109.47180 * 175.00197 * 3 2 1 7 7 N 1.46905 * 109.47289 * 176.28497 * 6 3 2 8 8 C 1.46899 * 111.00208 * 199.76843 * 7 6 3 9 9 C 1.46900 * 110.99751 * 75.81293 * 7 6 3 10 10 C 1.50702 * 109.47144 * 190.00014 * 9 7 6 11 11 C 1.38300 * 119.93222 * 269.72852 * 10 9 7 12 12 C 1.38102 * 120.06864 * 179.71890 * 11 10 9 13 13 C 1.38873 * 119.92876 * 0.57471 * 12 11 10 14 14 O 1.35752 * 120.06782 * 179.67561 * 13 12 11 15 15 C 1.34829 * 116.99993 * 185.51142 * 14 13 12 16 16 H 1.07997 * 120.00329 * 5.25472 * 15 14 13 17 17 C 1.38660 * 120.00138 * 185.25728 * 15 14 13 18 18 N 1.31552 * 119.99963 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99768 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47415 * 90.00195 * 19 17 15 21 21 H 1.48503 * 109.47360 * 210.00178 * 19 17 15 22 22 H 1.48500 * 109.47293 * 330.00214 * 19 17 15 23 23 C 1.38876 * 119.86381 * 359.70268 * 13 12 11 24 24 C 1.38101 * 119.93270 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46749 * 299.99746 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.99659 * 1 2 3 28 28 H 1.09005 * 109.46749 * 240.00254 * 2 1 3 29 29 H 1.08992 * 109.47338 * 120.00685 * 2 1 3 30 30 H 1.00904 * 111.00224 * 173.72695 * 5 3 2 31 31 H 1.00895 * 110.99990 * 297.67913 * 5 3 2 32 32 H 1.09000 * 109.47215 * 296.28673 * 6 3 2 33 33 H 1.09005 * 109.47268 * 56.29159 * 6 3 2 34 34 H 1.09000 * 109.47041 * 54.40324 * 8 7 6 35 35 H 1.08994 * 109.47200 * 174.40442 * 8 7 6 36 36 H 1.09005 * 109.47162 * 294.40509 * 8 7 6 37 37 H 1.08994 * 109.47216 * 309.99974 * 9 7 6 38 38 H 1.09001 * 109.46862 * 70.00453 * 9 7 6 39 39 H 1.07998 * 119.96566 * 359.97438 * 11 10 9 40 40 H 1.08005 * 120.03198 * 180.27022 * 12 11 10 41 41 H 0.97000 * 119.99744 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03628 * 179.97438 * 23 13 12 43 43 H 1.07993 * 119.96629 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5649 1.4442 0.1257 7 7 4.0620 2.8237 0.0364 8 6 5.4880 2.8477 -0.3157 9 6 3.8161 3.5539 1.2871 10 6 4.1098 5.0175 1.0805 11 6 5.3807 5.5070 1.3210 12 6 5.6545 6.8466 1.1270 13 6 4.6489 7.7047 0.7014 14 8 4.9132 9.0233 0.5161 15 6 3.8687 9.8203 0.2133 16 1 2.8660 9.4191 0.2116 17 6 4.0819 11.1551 -0.0958 18 7 3.0627 11.9328 -0.3907 19 14 5.8161 11.8491 -0.0922 20 1 6.4126 11.6980 -1.4437 21 1 5.7726 13.2883 0.2715 22 1 6.6419 11.1130 0.8984 23 6 3.3723 7.2112 0.4662 24 6 3.1065 5.8693 0.6556 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.8864 3.0804 -1.2378 31 1 2.0728 1.6406 -2.0489 32 1 3.8507 1.0165 1.0866 33 1 3.9965 0.8497 -0.6796 34 1 5.6462 2.2755 -1.2298 35 1 5.8062 3.8783 -0.4725 36 1 6.0696 2.4071 0.4941 37 1 2.7738 3.4304 1.5810 38 1 4.4637 3.1605 2.0707 39 1 6.1610 4.8401 1.6570 40 1 6.6483 7.2274 1.3108 41 1 3.2118 12.8666 -0.6066 42 1 2.5881 7.8761 0.1355 43 1 2.1140 5.4849 0.4725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236865863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:12 Heat of formation + Delta-G solvation = -7.529506 kcal Electronic energy + Delta-G solvation = -21451.490908 eV Core-core repulsion = 18303.953246 eV Total energy + Delta-G solvation = -3147.537662 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.42493 -38.43367 -36.77506 -35.16168 -32.41672 -31.16297 -30.44074 -30.09044 -28.03690 -26.62198 -25.07550 -24.04331 -22.12194 -21.66927 -20.68973 -20.03322 -17.90405 -17.26415 -16.39993 -15.64011 -15.38554 -15.19357 -14.77316 -14.42879 -14.06623 -13.97810 -13.77498 -13.47740 -13.33260 -13.09930 -12.70269 -12.65881 -12.47062 -12.21380 -11.98491 -11.82628 -11.59823 -11.35510 -11.14478 -11.01723 -10.86652 -10.72556 -10.67638 -10.60608 -10.14770 -9.41053 -8.88329 -8.73299 -8.31191 -8.23717 -7.32488 -6.42507 -4.08911 2.11643 2.16861 3.21012 3.24853 3.39259 3.86637 4.22761 4.49221 4.59667 4.73886 4.86232 4.98386 5.08493 5.09979 5.11189 5.14039 5.29834 5.34594 5.46500 5.49367 5.56451 5.62900 5.71002 5.73572 5.78782 5.80426 5.86346 5.99161 6.10853 6.13814 6.24360 6.32959 6.55683 6.77774 6.93284 6.97096 7.09015 7.25555 7.27478 7.32948 7.57848 7.60675 7.79392 8.03021 8.92795 9.55291 10.65198 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.003388 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.386098 B = 8263.367353 C = 8866.839917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.096 3.904 4 H 0.077 0.923 5 N -0.833 5.833 6 C 0.016 3.984 7 N -0.536 5.536 8 C 0.025 3.975 9 C 0.110 3.890 10 C -0.171 4.171 11 C -0.071 4.071 12 C -0.194 4.194 13 C 0.161 3.839 14 O -0.218 6.218 15 C -0.389 4.389 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.221 4.221 24 C -0.051 4.051 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.353 0.647 31 H 0.332 0.668 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.279 0.721 42 H 0.133 0.867 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -20.974 1.321 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.095 0.905 5 N -0.362 5.362 6 C -0.114 4.114 7 N -0.260 5.260 8 C -0.123 4.123 9 C -0.016 4.016 10 C -0.172 4.172 11 C -0.089 4.089 12 C -0.213 4.213 13 C 0.109 3.891 14 O -0.123 6.123 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.240 4.240 24 C -0.070 4.070 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.129 -20.567 1.101 20.597 hybrid contribution 2.130 0.234 0.466 2.193 sum 2.259 -20.334 1.567 20.519 Atomic orbital electron populations 1.21642 0.95098 1.00594 1.02687 1.21504 0.96919 0.95543 1.01308 1.21441 0.91150 0.94963 0.94115 0.90478 1.59012 1.65604 1.08399 1.03164 1.23037 0.98033 0.89838 1.00488 1.61975 1.17305 1.12900 1.33804 1.22414 0.87483 1.03144 0.99252 1.20876 1.00577 0.91094 0.89085 1.19109 0.94439 0.93831 1.09851 1.20470 0.95497 0.94051 0.98922 1.20152 0.98613 0.92914 1.09636 1.19141 0.92988 0.84128 0.92886 1.83582 1.36898 1.14083 1.77694 1.20769 0.86998 0.90967 1.47719 0.87620 1.24469 0.99230 0.94922 0.95381 1.69646 1.30586 1.06976 1.44465 0.86184 0.83369 0.77899 0.79461 1.19908 1.20770 1.18386 1.21286 0.97781 0.96070 1.08875 1.20609 0.97802 0.92522 0.96060 0.93693 0.93199 0.91354 0.92315 0.92282 0.83235 0.85645 0.94781 0.91288 0.92162 0.90245 0.96131 0.90749 0.94973 0.87486 0.86702 0.91038 0.84966 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.80 37.16 0.36 -0.85 16 2 C -0.11 -0.93 5.59 -26.73 -0.15 -1.08 16 3 C 0.10 0.90 2.80 -67.71 -0.19 0.71 16 4 H 0.08 0.82 6.91 -51.93 -0.36 0.46 16 5 N -0.83 -8.44 8.62 -4.67 -0.04 -8.48 16 6 C 0.02 0.15 4.64 -3.82 -0.02 0.14 16 7 N -0.54 -6.14 4.01 -244.37 -0.98 -7.12 16 8 C 0.03 0.28 9.07 60.06 0.54 0.83 16 9 C 0.11 1.40 4.94 -4.98 -0.02 1.38 16 10 C -0.17 -2.71 4.88 -104.57 -0.51 -3.22 16 11 C -0.07 -1.16 8.01 -39.61 -0.32 -1.48 16 12 C -0.19 -3.77 9.99 -39.40 -0.39 -4.17 16 13 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 14 O -0.22 -5.72 8.59 0.04 0.00 -5.72 16 15 C -0.39 -10.93 9.91 30.89 0.31 -10.63 16 16 H 0.11 3.04 5.52 -52.49 -0.29 2.75 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.38 13.96 55.48 0.77 -24.60 16 19 Si 0.91 21.64 28.62 -169.99 -4.86 16.78 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.22 -4.70 9.14 -39.40 -0.36 -5.06 16 24 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.35 4.10 8.49 -39.29 -0.33 3.77 16 31 H 0.33 3.09 8.99 -39.29 -0.35 2.74 16 32 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 33 H 0.07 0.62 7.80 -51.93 -0.41 0.22 16 34 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 35 H 0.08 1.04 6.28 -51.93 -0.33 0.71 16 36 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 37 H 0.07 0.91 6.64 -51.93 -0.34 0.57 16 38 H 0.03 0.39 8.05 -51.93 -0.42 -0.02 16 39 H 0.11 1.48 8.04 -52.49 -0.42 1.06 16 40 H 0.11 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.13 2.99 5.71 -52.49 -0.30 2.69 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -28.11 346.98 -8.24 -36.36 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.88 Total: 7.20 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.49 Total: -19.63 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.25 Total: -40.21 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: 0.00 Total: -5.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.11 -8.24 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236865863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.828 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds