Wall clock time and date at job start Tue Mar 31 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47273 * 2 1 4 4 H 1.09002 * 109.47123 * 55.00689 * 3 2 1 5 5 N 1.46902 * 109.47404 * 295.00343 * 3 2 1 6 6 C 1.53000 * 109.47180 * 175.00197 * 3 2 1 7 7 N 1.46905 * 109.47289 * 176.28497 * 6 3 2 8 8 C 1.46899 * 111.00208 * 199.76843 * 7 6 3 9 9 C 1.46900 * 110.99751 * 75.81293 * 7 6 3 10 10 C 1.50702 * 109.47144 * 190.00014 * 9 7 6 11 11 C 1.38300 * 119.93222 * 269.72852 * 10 9 7 12 12 C 1.38102 * 120.06864 * 179.71890 * 11 10 9 13 13 C 1.38873 * 119.92876 * 0.57471 * 12 11 10 14 14 O 1.35752 * 120.06782 * 179.67561 * 13 12 11 15 15 C 1.34829 * 116.99993 * 185.51142 * 14 13 12 16 16 H 1.07997 * 120.00329 * 5.25472 * 15 14 13 17 17 C 1.38660 * 120.00138 * 185.25728 * 15 14 13 18 18 N 1.31552 * 119.99963 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99768 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47415 * 90.00195 * 19 17 15 21 21 H 1.48503 * 109.47360 * 210.00178 * 19 17 15 22 22 H 1.48500 * 109.47293 * 330.00214 * 19 17 15 23 23 C 1.38876 * 119.86381 * 359.70268 * 13 12 11 24 24 C 1.38101 * 119.93270 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46749 * 299.99746 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.99659 * 1 2 3 28 28 H 1.09005 * 109.46749 * 240.00254 * 2 1 3 29 29 H 1.08992 * 109.47338 * 120.00685 * 2 1 3 30 30 H 1.00904 * 111.00224 * 173.72695 * 5 3 2 31 31 H 1.00895 * 110.99990 * 297.67913 * 5 3 2 32 32 H 1.09000 * 109.47215 * 296.28673 * 6 3 2 33 33 H 1.09005 * 109.47268 * 56.29159 * 6 3 2 34 34 H 1.09000 * 109.47041 * 54.40324 * 8 7 6 35 35 H 1.08994 * 109.47200 * 174.40442 * 8 7 6 36 36 H 1.09005 * 109.47162 * 294.40509 * 8 7 6 37 37 H 1.08994 * 109.47216 * 309.99974 * 9 7 6 38 38 H 1.09001 * 109.46862 * 70.00453 * 9 7 6 39 39 H 1.07998 * 119.96566 * 359.97438 * 11 10 9 40 40 H 1.08005 * 120.03198 * 180.27022 * 12 11 10 41 41 H 0.97000 * 119.99744 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03628 * 179.97438 * 23 13 12 43 43 H 1.07993 * 119.96629 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5649 1.4442 0.1257 7 7 4.0620 2.8237 0.0364 8 6 5.4880 2.8477 -0.3157 9 6 3.8161 3.5539 1.2871 10 6 4.1098 5.0175 1.0805 11 6 5.3807 5.5070 1.3210 12 6 5.6545 6.8466 1.1270 13 6 4.6489 7.7047 0.7014 14 8 4.9132 9.0233 0.5161 15 6 3.8687 9.8203 0.2133 16 1 2.8660 9.4191 0.2116 17 6 4.0819 11.1551 -0.0958 18 7 3.0627 11.9328 -0.3907 19 14 5.8161 11.8491 -0.0922 20 1 6.4126 11.6980 -1.4437 21 1 5.7726 13.2883 0.2715 22 1 6.6419 11.1130 0.8984 23 6 3.3723 7.2112 0.4662 24 6 3.1065 5.8693 0.6556 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.8864 3.0804 -1.2378 31 1 2.0728 1.6406 -2.0489 32 1 3.8507 1.0165 1.0866 33 1 3.9965 0.8497 -0.6796 34 1 5.6462 2.2755 -1.2298 35 1 5.8062 3.8783 -0.4725 36 1 6.0696 2.4071 0.4941 37 1 2.7738 3.4304 1.5810 38 1 4.4637 3.1605 2.0707 39 1 6.1610 4.8401 1.6570 40 1 6.6483 7.2274 1.3108 41 1 3.2118 12.8666 -0.6066 42 1 2.5881 7.8761 0.1355 43 1 2.1140 5.4849 0.4725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236865863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:11 Heat of formation + Delta-G solvation = -25.874793 kcal Electronic energy + Delta-G solvation = -21452.286420 eV Core-core repulsion = 18303.953246 eV Total energy + Delta-G solvation = -3148.333173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97204 -39.58483 -38.15882 -36.13441 -34.45522 -32.01240 -31.89289 -31.44456 -28.84806 -28.06904 -26.68676 -25.03305 -23.63990 -22.74527 -21.79061 -21.03476 -19.82155 -19.07528 -17.24216 -16.79047 -16.52085 -16.35384 -16.12273 -15.68258 -15.63453 -15.40736 -15.13863 -14.69909 -14.42567 -14.24976 -14.09741 -13.98629 -13.84414 -13.43250 -13.04178 -12.89733 -12.73114 -12.62085 -12.44624 -12.35040 -12.10531 -11.92938 -11.85191 -11.60154 -11.51298 -11.27931 -10.89960 -9.78480 -9.56070 -9.16530 -8.94273 -8.50080 -6.22438 0.57934 0.63275 1.30980 1.35128 1.51535 2.27826 2.69156 2.97179 3.11983 3.26644 3.85990 3.90853 3.99402 4.04436 4.17397 4.30632 4.37474 4.39535 4.45066 4.54006 4.58617 4.60895 4.70834 4.77870 4.82995 4.85549 4.97946 5.02234 5.09010 5.10343 5.20223 5.26103 5.39046 5.42534 5.56733 5.57349 5.76266 5.81814 5.91332 6.08477 6.15459 6.26470 6.49241 6.76548 6.84393 7.59219 8.61779 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.003388 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.386098 B = 8263.367353 C = 8866.839917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.098 3.902 4 H 0.066 0.934 5 N -0.838 5.838 6 C 0.023 3.977 7 N -0.545 5.545 8 C 0.025 3.975 9 C 0.114 3.886 10 C -0.143 4.143 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.398 4.398 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.237 4.237 24 C -0.052 4.052 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.337 0.663 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.285 0.715 42 H 0.105 0.895 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -24.336 2.029 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.015 4.015 4 H 0.084 0.916 5 N -0.366 5.366 6 C -0.106 4.106 7 N -0.269 5.269 8 C -0.123 4.123 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.079 4.079 12 C -0.211 4.211 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.474 4.474 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.256 4.256 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.802 -23.992 1.814 24.128 hybrid contribution 1.537 0.866 0.293 1.788 sum 3.339 -23.126 2.107 23.461 Atomic orbital electron populations 1.21619 0.95539 1.01002 1.01756 1.21478 0.96459 0.94764 1.02143 1.21442 0.91243 0.95481 0.93285 0.91578 1.59011 1.65921 1.07872 1.03824 1.23007 0.97740 0.88553 1.01347 1.61880 1.17779 1.14263 1.32946 1.22410 0.87270 1.02199 1.00419 1.20852 1.01590 0.88626 0.90259 1.19572 0.93478 0.95641 1.05669 1.20889 0.96648 0.93113 0.97234 1.20466 0.98347 0.93729 1.08605 1.19678 0.94644 0.83633 0.94952 1.83519 1.35953 1.15529 1.80352 1.20686 0.86805 0.91853 1.48095 0.90330 1.25288 1.03287 0.95093 0.95229 1.69732 1.32563 1.07552 1.46638 0.85209 0.78300 0.77630 0.79515 1.19152 1.19172 1.18644 1.21268 0.96903 0.97485 1.09932 1.20834 0.99518 0.91096 0.95652 0.92660 0.93662 0.92727 0.91747 0.91116 0.84266 0.85093 0.93871 0.90299 0.90999 0.92225 0.94791 0.89969 0.93253 0.83589 0.85560 0.90577 0.87718 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.80 71.98 0.71 -1.42 16 2 C -0.11 -1.47 5.59 30.59 0.17 -1.30 16 3 C 0.10 1.57 2.80 44.91 0.13 1.69 16 4 H 0.07 1.22 6.91 -2.39 -0.02 1.20 16 5 N -0.84 -15.36 8.62 -168.68 -1.45 -16.81 16 6 C 0.02 0.35 4.64 86.30 0.40 0.75 16 7 N -0.54 -10.44 4.01 -927.04 -3.72 -14.16 16 8 C 0.03 0.46 9.07 127.69 1.16 1.62 16 9 C 0.11 2.42 4.94 85.56 0.42 2.84 16 10 C -0.14 -4.11 4.88 -19.83 -0.10 -4.21 16 11 C -0.06 -1.79 8.01 22.25 0.18 -1.61 16 12 C -0.19 -7.26 9.99 22.39 0.22 -7.03 16 13 C 0.12 5.62 6.65 22.57 0.15 5.77 16 14 O -0.25 -13.48 8.59 -22.76 -0.20 -13.67 16 15 C -0.40 -23.74 9.91 67.92 0.67 -23.06 16 16 H 0.08 4.93 5.52 -2.91 -0.02 4.92 16 17 C 0.01 0.54 5.49 84.84 0.47 1.01 16 18 N -0.92 -55.78 13.96 21.61 0.30 -55.48 16 19 Si 0.97 45.79 28.62 68.60 1.96 47.76 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 23 C -0.24 -10.47 9.14 22.39 0.20 -10.26 16 24 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.05 0.96 7.75 -2.39 -0.02 0.95 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.34 7.41 8.49 -89.69 -0.76 6.65 16 31 H 0.34 5.56 8.99 -89.70 -0.81 4.75 16 32 H 0.04 0.61 8.00 -2.39 -0.02 0.59 16 33 H 0.08 1.09 7.80 -2.38 -0.02 1.07 16 34 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 35 H 0.06 1.35 6.28 -2.39 -0.02 1.33 16 36 H 0.03 0.55 8.13 -2.38 -0.02 0.53 16 37 H 0.08 1.69 6.64 -2.39 -0.02 1.68 16 38 H 0.05 0.94 8.05 -2.39 -0.02 0.92 16 39 H 0.15 3.28 8.04 -2.91 -0.02 3.25 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.10 5.16 5.71 -2.91 -0.02 5.15 16 43 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -64.18 346.98 1.33 -62.84 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.56 Total: 26.33 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 5.00 Total: -36.80 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -4.87 Total: -86.45 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.20 Total: -13.67 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.96 Total: 47.76 kcal Total: -64.18 1.33 -62.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236865863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.967 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds