Wall clock time and date at job start Tue Mar 31 2020 00:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46805 * 2 1 4 4 C 1.53000 * 109.46805 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.35685 * 116.99652 * 180.02562 * 5 4 3 7 7 N 1.32275 * 119.68456 * 0.02562 * 6 5 4 8 8 C 1.31934 * 121.64498 * 180.02562 * 7 6 5 9 9 C 1.38086 * 120.83573 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.35603 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47051 * 90.00131 * 10 9 8 12 12 C 1.46503 * 119.99547 * 269.99782 * 11 10 9 13 13 C 1.36930 * 120.00505 * 90.00014 * 11 10 9 14 14 H 1.08000 * 119.99946 * 339.27407 * 13 11 10 15 15 C 1.38811 * 120.00612 * 159.54957 * 13 11 10 16 16 N 1.31625 * 119.99491 * 347.60339 * 15 13 11 17 17 Si 1.86794 * 120.00466 * 167.60742 * 15 13 11 18 18 H 1.48500 * 109.47143 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47042 * 119.99982 * 17 15 13 20 20 H 1.48497 * 109.47144 * 239.99793 * 17 15 13 21 21 C 1.38786 * 119.28671 * 0.25103 * 9 8 7 22 22 C 1.38421 * 118.48368 * 359.46535 * 21 9 8 23 23 C 1.50701 * 120.44166 * 180.28311 * 22 21 9 24 24 H 1.08998 * 109.46944 * 299.99532 * 1 2 3 25 25 H 1.08994 * 109.47378 * 59.99580 * 1 2 3 26 26 H 1.09009 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46944 * 240.00468 * 2 1 3 28 28 H 1.08997 * 109.47853 * 120.00251 * 2 1 3 29 29 H 1.08998 * 109.46987 * 60.00494 * 3 2 1 30 30 H 1.08994 * 109.47495 * 300.00348 * 3 2 1 31 31 H 1.08998 * 109.46944 * 60.00468 * 4 3 2 32 32 H 1.08997 * 109.47853 * 300.00251 * 4 3 2 33 33 H 1.07999 * 119.58030 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.46841 * 329.99804 * 10 9 8 35 35 H 1.09006 * 109.46746 * 209.99891 * 10 9 8 36 36 H 1.08999 * 109.47011 * 264.88852 * 12 11 10 37 37 H 1.08994 * 109.47161 * 24.89088 * 12 11 10 38 38 H 1.09000 * 109.46934 * 144.89540 * 12 11 10 39 39 H 0.96998 * 119.99976 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.75808 * 179.72396 * 21 9 8 41 41 H 1.09001 * 109.46850 * 270.27403 * 23 22 21 42 42 H 1.08999 * 109.47047 * 30.27622 * 23 22 21 43 43 H 1.09010 * 109.46959 * 150.27378 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.3913 2.9677 0.0013 7 7 6.1913 1.9143 0.0003 8 6 7.5044 2.0423 0.0009 9 6 8.0938 3.2911 0.0030 10 6 9.5950 3.4248 0.0042 11 7 10.0822 3.4701 -1.3766 12 6 10.4385 2.2289 -2.0686 13 6 10.2048 4.6724 -2.0203 14 1 9.6516 5.5313 -1.6702 15 6 11.0357 4.7860 -3.1265 16 7 11.8862 3.8229 -3.4123 17 14 10.9469 6.3054 -4.2093 18 1 9.9177 7.2337 -3.6762 19 1 12.2677 6.9842 -4.2190 20 1 10.5853 5.9066 -5.5933 21 6 7.2890 4.4217 0.0100 22 6 5.9150 4.2540 0.0031 23 6 4.9996 5.4511 0.0038 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9336 0.9287 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 8.1262 1.1593 0.0005 34 1 10.0354 2.5698 0.5172 35 1 9.8775 4.3428 0.5196 36 1 11.5101 2.0543 -1.9730 37 1 9.8935 1.3960 -1.6245 38 1 10.1768 2.3132 -3.1234 39 1 12.4665 3.9020 -4.1855 40 1 7.7247 5.4099 0.0162 41 1 4.7782 5.7386 1.0316 42 1 5.4862 6.2809 -0.5089 43 1 4.0722 5.1997 -0.5110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238488294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:51 Heat of formation + Delta-G solvation = -1.528340 kcal Electronic energy + Delta-G solvation = -21417.354337 eV Core-core repulsion = 18270.076906 eV Total energy + Delta-G solvation = -3147.277432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35075 -38.02816 -35.69927 -35.10176 -33.31349 -32.15248 -30.28611 -29.34194 -26.90882 -26.09922 -25.55086 -24.17767 -22.24965 -21.83913 -21.17557 -20.13108 -18.05586 -16.87665 -16.46527 -16.42686 -15.11727 -14.89041 -14.46492 -14.29951 -14.03029 -13.73862 -13.52045 -13.42175 -13.10026 -12.67372 -12.62601 -12.40322 -12.31636 -12.03359 -11.87648 -11.46114 -11.39051 -11.18596 -11.06545 -10.90545 -10.84344 -10.71382 -10.53691 -10.32144 -9.98656 -9.90824 -9.22540 -9.13385 -8.55669 -7.84271 -6.79775 -5.73012 -3.18413 1.57127 1.77951 3.20236 3.37214 3.44430 3.46071 4.16571 4.52157 4.63287 4.68214 4.76298 4.83876 5.11411 5.20880 5.25414 5.33164 5.42567 5.43090 5.50557 5.52774 5.60029 5.64432 5.69895 5.75515 5.82217 5.85296 5.86138 5.93823 5.99693 6.06375 6.21206 6.38588 6.52804 6.61151 6.75354 6.92032 6.94815 7.40877 7.58094 7.71517 7.80906 8.25882 8.36806 9.22024 9.84950 10.32366 11.31770 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.003542 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.138435 B = 7903.886076 C = 8156.492261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.073 3.927 5 O -0.311 6.311 6 C 0.299 3.701 7 N -0.541 5.541 8 C 0.131 3.869 9 C -0.157 4.157 10 C 0.190 3.810 11 N -0.595 5.595 12 C 0.163 3.837 13 C -0.252 4.252 14 H 0.069 0.931 15 C 0.000 4.000 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.290 1.290 21 C -0.032 4.032 22 C -0.158 4.158 23 C -0.096 4.096 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.151 0.849 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.032 0.968 37 H -0.004 1.004 38 H 0.044 0.956 39 H 0.252 0.748 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 -4.328 8.542 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.003 4.003 5 O -0.219 6.219 6 C 0.120 3.880 7 N -0.263 5.263 8 C -0.025 4.025 9 C -0.163 4.163 10 C 0.062 3.938 11 N -0.317 5.317 12 C 0.019 3.981 13 C -0.381 4.381 14 H 0.086 0.914 15 C -0.197 4.197 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.059 4.059 22 C -0.161 4.161 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.015 0.985 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.649 -5.001 8.376 20.166 hybrid contribution 0.468 1.296 -0.865 1.627 sum -17.181 -3.705 7.510 19.114 Atomic orbital electron populations 1.21751 0.95398 1.01709 1.01968 1.21419 0.96105 0.95827 1.02529 1.21605 0.93298 0.97554 1.03309 1.22539 0.93692 0.81787 1.02267 1.86146 1.17444 1.29686 1.88620 1.19438 0.83500 0.89627 0.95428 1.67226 1.06827 1.32942 1.19311 1.22183 0.88465 0.97129 0.94705 1.22060 1.01036 0.93076 1.00087 1.19633 0.86102 1.00207 0.87844 1.43937 1.75095 1.04015 1.08639 1.20830 0.97348 0.84088 0.95842 1.19207 1.20518 0.88602 1.09803 0.91363 1.24971 0.96655 0.97833 1.00280 1.70094 1.23505 1.33147 1.28615 0.86192 0.77319 0.82457 0.80633 1.20327 1.21700 1.21655 1.21243 0.90997 0.99607 0.94004 1.19857 0.94886 0.93144 1.08199 1.20517 0.98333 0.94663 1.01834 0.92653 0.92613 0.92586 0.91623 0.91684 0.91150 0.91091 0.91957 0.92032 0.83151 0.93243 0.92316 0.95008 0.98514 0.93771 0.93799 0.84604 0.91750 0.91603 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.16 5.58 -26.73 -0.15 -1.31 16 4 C 0.07 0.92 5.31 37.16 0.20 1.12 16 5 O -0.31 -4.80 9.18 -18.76 -0.17 -4.97 16 6 C 0.30 5.18 7.47 -17.13 -0.13 5.05 16 7 N -0.54 -9.66 9.22 -13.33 -0.12 -9.78 16 8 C 0.13 2.33 10.85 -17.56 -0.19 2.14 16 9 C -0.16 -2.91 5.48 -104.47 -0.57 -3.48 16 10 C 0.19 3.81 5.79 -5.19 -0.03 3.78 16 11 N -0.60 -14.75 2.91 -182.50 -0.53 -15.29 16 12 C 0.16 4.02 8.96 59.85 0.54 4.56 16 13 C -0.25 -6.82 9.69 -15.06 -0.15 -6.97 16 14 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 15 C 0.00 0.01 5.12 -17.43 -0.09 -0.08 16 16 N -0.91 -26.45 10.53 55.49 0.58 -25.86 16 17 Si 0.90 21.90 29.57 -169.99 -5.03 16.87 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C -0.03 -0.57 9.53 -39.31 -0.37 -0.94 16 22 C -0.16 -2.63 5.91 -104.32 -0.62 -3.25 16 23 C -0.10 -1.29 9.81 36.01 0.35 -0.93 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 35 H 0.06 1.14 7.99 -51.93 -0.41 0.73 16 36 H 0.03 0.84 7.41 -51.93 -0.38 0.45 16 37 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 38 H 0.04 1.19 7.14 -51.93 -0.37 0.82 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 40 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.07 0.89 7.55 -51.92 -0.39 0.49 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -30.47 355.96 -8.34 -38.81 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.43 Total: -3.04 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.00 Total: -2.10 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.07 Total: -50.93 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.17 Total: -4.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.47 -8.34 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238488294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.278 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds