Wall clock time and date at job start Tue Mar 31 2020 00:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46805 * 2 1 4 4 C 1.53000 * 109.46805 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.35685 * 116.99652 * 180.02562 * 5 4 3 7 7 N 1.32275 * 119.68456 * 0.02562 * 6 5 4 8 8 C 1.31934 * 121.64498 * 180.02562 * 7 6 5 9 9 C 1.38086 * 120.83573 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.35603 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47051 * 90.00131 * 10 9 8 12 12 C 1.46503 * 119.99547 * 269.99782 * 11 10 9 13 13 C 1.36930 * 120.00505 * 90.00014 * 11 10 9 14 14 H 1.08000 * 119.99946 * 339.27407 * 13 11 10 15 15 C 1.38811 * 120.00612 * 159.54957 * 13 11 10 16 16 N 1.31625 * 119.99491 * 347.60339 * 15 13 11 17 17 Si 1.86794 * 120.00466 * 167.60742 * 15 13 11 18 18 H 1.48500 * 109.47143 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47042 * 119.99982 * 17 15 13 20 20 H 1.48497 * 109.47144 * 239.99793 * 17 15 13 21 21 C 1.38786 * 119.28671 * 0.25103 * 9 8 7 22 22 C 1.38421 * 118.48368 * 359.46535 * 21 9 8 23 23 C 1.50701 * 120.44166 * 180.28311 * 22 21 9 24 24 H 1.08998 * 109.46944 * 299.99532 * 1 2 3 25 25 H 1.08994 * 109.47378 * 59.99580 * 1 2 3 26 26 H 1.09009 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46944 * 240.00468 * 2 1 3 28 28 H 1.08997 * 109.47853 * 120.00251 * 2 1 3 29 29 H 1.08998 * 109.46987 * 60.00494 * 3 2 1 30 30 H 1.08994 * 109.47495 * 300.00348 * 3 2 1 31 31 H 1.08998 * 109.46944 * 60.00468 * 4 3 2 32 32 H 1.08997 * 109.47853 * 300.00251 * 4 3 2 33 33 H 1.07999 * 119.58030 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.46841 * 329.99804 * 10 9 8 35 35 H 1.09006 * 109.46746 * 209.99891 * 10 9 8 36 36 H 1.08999 * 109.47011 * 264.88852 * 12 11 10 37 37 H 1.08994 * 109.47161 * 24.89088 * 12 11 10 38 38 H 1.09000 * 109.46934 * 144.89540 * 12 11 10 39 39 H 0.96998 * 119.99976 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.75808 * 179.72396 * 21 9 8 41 41 H 1.09001 * 109.46850 * 270.27403 * 23 22 21 42 42 H 1.08999 * 109.47047 * 30.27622 * 23 22 21 43 43 H 1.09010 * 109.46959 * 150.27378 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.3913 2.9677 0.0013 7 7 6.1913 1.9143 0.0003 8 6 7.5044 2.0423 0.0009 9 6 8.0938 3.2911 0.0030 10 6 9.5950 3.4248 0.0042 11 7 10.0822 3.4701 -1.3766 12 6 10.4385 2.2289 -2.0686 13 6 10.2048 4.6724 -2.0203 14 1 9.6516 5.5313 -1.6702 15 6 11.0357 4.7860 -3.1265 16 7 11.8862 3.8229 -3.4123 17 14 10.9469 6.3054 -4.2093 18 1 9.9177 7.2337 -3.6762 19 1 12.2677 6.9842 -4.2190 20 1 10.5853 5.9066 -5.5933 21 6 7.2890 4.4217 0.0100 22 6 5.9150 4.2540 0.0031 23 6 4.9996 5.4511 0.0038 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9336 0.9287 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 8.1262 1.1593 0.0005 34 1 10.0354 2.5698 0.5172 35 1 9.8775 4.3428 0.5196 36 1 11.5101 2.0543 -1.9730 37 1 9.8935 1.3960 -1.6245 38 1 10.1768 2.3132 -3.1234 39 1 12.4665 3.9020 -4.1855 40 1 7.7247 5.4099 0.0162 41 1 4.7782 5.7386 1.0316 42 1 5.4862 6.2809 -0.5089 43 1 4.0722 5.1997 -0.5110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238488294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:50 Heat of formation + Delta-G solvation = -18.491503 kcal Electronic energy + Delta-G solvation = -21418.089915 eV Core-core repulsion = 18270.076906 eV Total energy + Delta-G solvation = -3148.013010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.65812 -39.27482 -37.39334 -36.00707 -34.57465 -33.89223 -31.92706 -30.26692 -28.20659 -27.95535 -27.23780 -25.22564 -23.63375 -23.23476 -22.05849 -21.63204 -19.30527 -18.71042 -17.90928 -17.48419 -16.91612 -15.98228 -15.90027 -15.45970 -15.35969 -15.24337 -14.98943 -14.55147 -14.35290 -14.07462 -13.87082 -13.62633 -13.33125 -13.23960 -13.06284 -13.00402 -12.80737 -12.56864 -12.51505 -12.15260 -12.00727 -11.98831 -11.97194 -11.87843 -11.80516 -11.45169 -10.73710 -10.49374 -10.47892 -9.19973 -8.79023 -7.80840 -5.27961 0.23108 0.39327 1.45664 1.47607 1.56976 2.05361 2.50657 2.82257 3.32690 3.40189 3.86189 3.87537 3.92627 3.98063 4.01470 4.12580 4.17414 4.35441 4.38935 4.43682 4.53888 4.63059 4.66769 4.81843 4.84314 4.86882 4.88903 4.90403 5.00273 5.02695 5.20250 5.22971 5.25991 5.30851 5.37343 5.42588 5.51998 5.62149 5.64549 5.74181 6.31767 6.32667 6.90442 7.16029 7.87459 8.30328 9.22504 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.003542 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.138435 B = 7903.886076 C = 8156.492261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.070 3.930 5 O -0.313 6.313 6 C 0.290 3.710 7 N -0.550 5.550 8 C 0.125 3.875 9 C -0.169 4.169 10 C 0.192 3.808 11 N -0.612 5.612 12 C 0.178 3.822 13 C -0.252 4.252 14 H 0.075 0.925 15 C -0.058 4.058 16 N -0.941 5.941 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.296 1.296 21 C -0.040 4.040 22 C -0.162 4.162 23 C -0.093 4.093 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.029 0.971 38 H 0.011 0.989 39 H 0.246 0.754 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.171 -3.792 9.380 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.149 4.149 4 C -0.005 4.005 5 O -0.221 6.221 6 C 0.111 3.889 7 N -0.273 5.273 8 C -0.030 4.030 9 C -0.174 4.174 10 C 0.066 3.934 11 N -0.334 5.334 12 C 0.033 3.967 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.252 4.252 16 N -0.589 5.589 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.224 1.224 21 C -0.066 4.066 22 C -0.165 4.165 23 C -0.150 4.150 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.161 0.839 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.650 -4.461 9.254 22.174 hybrid contribution 0.973 1.078 -1.029 1.780 sum -18.677 -3.382 8.225 20.686 Atomic orbital electron populations 1.21741 0.94263 1.02410 1.02253 1.21422 0.97028 0.94593 1.02651 1.21596 0.90886 0.98830 1.03614 1.22742 0.95580 0.80508 1.01678 1.86157 1.16413 1.31241 1.88260 1.19747 0.84232 0.89915 0.94982 1.67260 1.06848 1.33442 1.19734 1.22382 0.88721 0.97415 0.94473 1.21829 0.99929 0.93879 1.01754 1.19730 0.86995 1.01181 0.85511 1.44161 1.75502 1.03273 1.10469 1.20544 0.96298 0.85425 0.94394 1.19549 1.19452 0.89558 1.09615 0.90758 1.25724 0.96980 1.00590 1.01924 1.70253 1.24602 1.34991 1.29006 0.85236 0.77332 0.79652 0.78481 1.18826 1.21868 1.22368 1.21409 0.91543 0.99709 0.93925 1.20195 0.95032 0.94139 1.07092 1.20564 0.97716 0.93506 1.03190 0.92209 0.92509 0.91721 0.91789 0.91354 0.90536 0.91047 0.92966 0.92175 0.81867 0.91480 0.91987 0.97367 0.95239 0.96966 0.94442 0.83872 0.89897 0.90747 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.70 5.93 30.60 0.18 -1.52 16 3 C -0.11 -1.97 5.58 30.60 0.17 -1.80 16 4 C 0.07 1.70 5.31 71.98 0.38 2.08 16 5 O -0.31 -9.19 9.18 -90.03 -0.83 -10.02 16 6 C 0.29 9.65 7.47 84.78 0.63 10.28 16 7 N -0.55 -19.03 9.22 -308.93 -2.85 -21.87 16 8 C 0.13 4.31 10.85 84.64 0.92 5.23 16 9 C -0.17 -6.04 5.48 -19.77 -0.11 -6.15 16 10 C 0.19 7.46 5.79 85.64 0.50 7.95 16 11 N -0.61 -30.06 2.91 -731.32 -2.13 -32.19 16 12 C 0.18 8.83 8.96 127.77 1.15 9.98 16 13 C -0.25 -13.53 9.69 84.03 0.81 -12.71 16 14 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 15 C -0.06 -3.24 5.12 84.86 0.43 -2.80 16 16 N -0.94 -55.86 10.53 21.65 0.23 -55.63 16 17 Si 0.96 45.15 29.57 68.60 2.03 47.18 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 21 C -0.04 -1.34 9.53 22.44 0.21 -1.13 16 22 C -0.16 -5.10 5.91 -19.67 -0.12 -5.22 16 23 C -0.09 -2.25 9.81 71.24 0.70 -1.55 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.16 5.02 8.06 -2.91 -0.02 4.99 16 34 H 0.07 2.34 8.02 -2.39 -0.02 2.32 16 35 H 0.06 2.34 7.99 -2.38 -0.02 2.32 16 36 H 0.01 0.43 7.41 -2.39 -0.02 0.42 16 37 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 38 H 0.01 0.64 7.14 -2.39 -0.02 0.63 16 39 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 43 H 0.07 1.67 7.55 -2.38 -0.02 1.66 16 Total: -1.00 -64.42 355.96 3.99 -60.43 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.96 Total: 10.45 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.58 Total: 1.64 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.75 Total: -109.69 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.83 Total: -10.02 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.42 3.99 -60.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238488294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.943 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds