Wall clock time and date at job start Tue Mar 31 2020 00:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 C 1.52998 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47095 * 176.56089 * 4 3 2 6 6 C 1.46893 * 111.00024 * 58.54620 * 5 4 3 7 7 C 1.50703 * 109.47366 * 66.04684 * 6 5 4 8 8 H 1.08006 * 119.99563 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00356 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00252 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00072 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47264 * 60.00599 * 11 9 7 13 13 H 1.48502 * 109.46968 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47174 * 300.00104 * 11 9 7 15 15 C 1.46902 * 110.99762 * 294.59099 * 5 4 3 16 16 C 1.50704 * 109.47385 * 288.11440 * 15 5 4 17 17 C 1.35350 * 119.64390 * 113.64743 * 16 15 5 18 18 C 1.40192 * 119.94360 * 179.97438 * 17 16 15 19 19 C 1.36397 * 119.26848 * 359.97438 * 18 17 16 20 20 C 1.40532 * 119.30662 * 0.02562 * 19 18 17 21 21 O 1.22060 * 119.99167 * 180.02562 * 20 19 18 22 22 N 1.34662 * 120.02612 * 359.97016 * 20 19 18 23 23 C 1.46504 * 119.62445 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47443 * 300.00733 * 1 2 3 26 26 H 1.09008 * 109.46741 * 60.00457 * 1 2 3 27 27 H 1.09002 * 109.47404 * 239.99251 * 2 1 3 28 28 H 1.09004 * 109.46950 * 120.00017 * 2 1 3 29 29 H 1.09003 * 109.47057 * 59.99650 * 3 2 1 30 30 H 1.09002 * 109.47462 * 299.99588 * 3 2 1 31 31 H 1.08996 * 109.47268 * 56.56280 * 4 3 2 32 32 H 1.09004 * 109.47428 * 296.55962 * 4 3 2 33 33 H 1.09005 * 109.47311 * 186.04274 * 6 5 4 34 34 H 1.08995 * 109.47241 * 306.04663 * 6 5 4 35 35 H 0.96999 * 120.00253 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46894 * 168.11895 * 15 5 4 37 37 H 1.08995 * 109.47062 * 48.11735 * 15 5 4 38 38 H 1.08000 * 120.02881 * 0.25699 * 17 16 15 39 39 H 1.08009 * 120.36621 * 180.02562 * 18 17 16 40 40 H 1.07998 * 120.34695 * 179.97438 * 19 18 17 41 41 H 1.08994 * 109.46965 * 0.02562 * 23 22 20 42 42 H 1.08997 * 109.46977 * 120.00407 * 23 22 20 43 43 H 1.09000 * 109.47222 * 240.00514 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0598 2.8249 -0.0824 6 6 3.5601 3.6288 1.0409 7 6 4.1519 3.1156 2.3283 8 1 4.8310 2.2759 2.3135 9 6 3.8265 3.7180 3.5250 10 7 2.9992 4.7402 3.5432 11 14 4.5596 3.0813 5.1209 12 1 6.0400 3.1810 5.0601 13 1 4.0546 3.8941 6.2565 14 1 4.1665 1.6625 5.3149 15 6 3.6977 3.4352 -1.3687 16 6 4.5323 2.8267 -2.4661 17 6 3.9374 2.0723 -3.4196 18 6 4.7076 1.5037 -4.4436 19 6 6.0540 1.7209 -4.4645 20 6 6.6392 2.5092 -3.4590 21 8 7.8428 2.7121 -3.4658 22 7 5.8725 3.0419 -2.4885 23 6 6.4917 3.8628 -1.4450 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.8760 -0.8567 32 1 3.9330 0.9830 0.9201 33 1 3.8479 4.6705 0.8986 34 1 2.4736 3.5549 1.0856 35 1 2.7700 5.1637 4.3852 36 1 3.8810 4.5088 -1.3258 37 1 2.6423 3.2546 -1.5722 38 1 2.8696 1.9123 -3.3940 39 1 4.2399 0.9009 -5.2082 40 1 6.6641 1.2909 -5.2451 41 1 7.5653 3.9265 -1.6222 42 1 6.0602 4.8635 -1.4661 43 1 6.3103 3.4093 -0.4705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248807146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:44 Heat of formation + Delta-G solvation = -25.034063 kcal Electronic energy + Delta-G solvation = -22508.423195 eV Core-core repulsion = 19360.126478 eV Total energy + Delta-G solvation = -3148.296717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37040 -39.45018 -37.76058 -35.59359 -35.20621 -34.47441 -31.84375 -29.83357 -28.87707 -28.47471 -26.48842 -25.06058 -23.64785 -23.30411 -22.39806 -20.94612 -18.41132 -18.29319 -18.06347 -17.30473 -16.95049 -16.71048 -16.28563 -16.03287 -15.48654 -15.36974 -15.22107 -14.34692 -14.17644 -14.16818 -13.95970 -13.68413 -13.42254 -13.22548 -13.03746 -12.95171 -12.80470 -12.53030 -12.47085 -12.26766 -12.23462 -11.97880 -11.88146 -11.64684 -11.29350 -11.19638 -10.97304 -10.90193 -10.55912 -8.94231 -8.86161 -8.17487 -6.24402 -0.05043 0.91779 1.41583 1.42638 1.49877 1.78182 2.40679 2.69930 3.16538 3.27096 3.55674 3.81616 4.02185 4.07689 4.13060 4.26800 4.37091 4.38828 4.45251 4.48844 4.53084 4.59219 4.66384 4.86240 4.88713 4.94682 4.96523 5.02382 5.12987 5.19220 5.24946 5.27427 5.32444 5.39344 5.43799 5.53196 5.58546 5.66463 5.70568 6.07447 6.21249 6.32638 6.59953 6.90484 7.04002 7.44351 8.92260 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.005880 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.517772 B = 4760.593807 C = 6136.630975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.070 3.930 5 N -0.538 5.538 6 C 0.209 3.791 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.011 3.989 10 N -0.929 5.929 11 Si 0.952 3.048 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.075 3.925 16 C 0.176 3.824 17 C -0.226 4.226 18 C 0.015 3.985 19 C -0.278 4.278 20 C 0.491 3.509 21 O -0.618 6.618 22 N -0.478 5.478 23 C 0.058 3.942 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.006 0.994 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.153 0.847 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -7.446 -13.752 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.184 4.184 4 C -0.058 4.058 5 N -0.261 5.261 6 C 0.084 3.916 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.188 4.188 10 N -0.570 5.570 11 Si 0.779 3.221 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.053 4.053 16 C 0.065 3.935 17 C -0.249 4.249 18 C -0.007 4.007 19 C -0.299 4.299 20 C 0.297 3.703 21 O -0.508 6.508 22 N -0.186 5.186 23 C -0.084 4.084 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.190 0.810 39 H 0.195 0.805 40 H 0.171 0.829 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.693 -7.150 -13.536 15.747 hybrid contribution -0.288 0.278 1.387 1.444 sum -3.980 -6.871 -12.149 14.514 Atomic orbital electron populations 1.21744 0.95342 1.01936 1.01510 1.21399 0.96270 0.95568 1.01985 1.22088 0.96984 0.98022 1.01266 1.22010 0.93141 0.89501 1.01181 1.62214 1.59773 1.03140 1.00974 1.19410 0.92983 0.91701 0.87539 1.21347 1.26698 1.15428 0.91772 0.92604 1.25657 0.95669 0.95267 1.02182 1.70033 1.36063 1.23461 1.27426 0.85691 0.78801 0.78404 0.79247 1.19928 1.21143 1.19656 1.21352 0.97349 0.98969 0.87630 1.20803 0.82426 0.94410 0.95817 1.20912 1.02659 1.04212 0.97099 1.21779 0.92146 0.91499 0.95294 1.22112 0.97613 1.07818 1.02394 1.17768 0.86807 0.82463 0.83298 1.90873 1.15787 1.65849 1.78250 1.45285 1.07572 1.41614 1.24153 1.22179 0.99573 0.95452 0.91186 0.91676 0.94352 0.91903 0.90433 0.93336 0.94204 0.91065 0.90880 0.92779 0.97624 0.99434 0.92894 0.89778 0.89732 0.81019 0.80522 0.82887 0.90168 0.89872 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.11 -2.72 5.93 30.59 0.18 -2.54 16 3 C -0.14 -4.25 4.53 30.59 0.14 -4.11 16 4 C 0.07 2.28 5.01 86.30 0.43 2.72 16 5 N -0.54 -19.43 3.08 -905.37 -2.79 -22.22 16 6 C 0.21 9.69 4.44 85.56 0.38 10.07 16 7 C -0.51 -26.85 8.53 25.60 0.22 -26.63 16 8 H 0.06 2.93 7.10 -2.91 -0.02 2.91 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -52.83 13.29 21.45 0.28 -52.55 16 11 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 C 0.08 2.13 4.31 85.56 0.37 2.50 16 16 C 0.18 4.59 5.31 41.29 0.22 4.81 16 17 C -0.23 -4.35 9.46 22.08 0.21 -4.14 16 18 C 0.01 0.25 10.09 22.31 0.23 0.48 16 19 C -0.28 -6.97 9.99 22.40 0.22 -6.74 16 20 C 0.49 16.65 7.41 84.82 0.63 17.28 16 21 O -0.62 -25.99 16.39 -5.51 -0.09 -26.08 16 22 N -0.48 -14.98 2.99 -659.75 -1.97 -16.95 16 23 C 0.06 1.88 9.51 127.77 1.21 3.10 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.04 1.49 6.44 -2.39 -0.02 1.48 16 30 H 0.07 1.80 6.17 -2.39 -0.01 1.78 16 31 H 0.07 2.11 7.23 -2.39 -0.02 2.09 16 32 H 0.05 2.08 6.90 -2.38 -0.02 2.06 16 33 H 0.01 0.29 7.86 -2.38 -0.02 0.27 16 34 H -0.01 -0.59 6.03 -2.39 -0.01 -0.61 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.08 2.47 7.21 -2.39 -0.02 2.46 16 37 H 0.08 2.07 5.63 -2.39 -0.01 2.06 16 38 H 0.17 2.26 7.89 -2.91 -0.02 2.24 16 39 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.08 2.75 6.85 -2.39 -0.02 2.73 16 42 H 0.08 2.45 7.63 -2.39 -0.02 2.43 16 43 H 0.09 3.37 6.78 -2.39 -0.02 3.36 16 Total: -1.00 -66.51 341.36 4.06 -62.45 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.98 Total: 14.90 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.61 Total: -4.58 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.48 Total: -91.72 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.09 Total: -26.08 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.51 4.06 -62.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248807146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.416 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds