Wall clock time and date at job start Tue Mar 31 2020 01:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46972 * 2 1 4 4 N 1.46899 * 109.47433 * 179.72143 * 3 2 1 5 5 C 1.46900 * 110.99921 * 297.90123 * 4 3 2 6 6 C 1.50695 * 109.46936 * 293.10717 * 5 4 3 7 7 H 1.08001 * 120.00291 * 354.97884 * 6 5 4 8 8 C 1.37884 * 120.00072 * 174.98347 * 6 5 4 9 9 N 1.31516 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47045 * 89.99774 * 10 8 6 12 12 H 1.48499 * 109.47143 * 209.99607 * 10 8 6 13 13 H 1.48500 * 109.47249 * 329.99827 * 10 8 6 14 14 C 1.46901 * 110.99728 * 61.84966 * 4 3 2 15 15 C 1.50697 * 109.46927 * 66.05222 * 14 4 3 16 16 C 1.38261 * 119.55613 * 94.99909 * 15 14 4 17 17 C 1.38538 * 119.22129 * 179.97438 * 16 15 14 18 18 C 1.39142 * 118.37420 * 0.02562 * 17 16 15 19 19 O 1.35912 * 120.47587 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99686 * 359.97438 * 19 18 17 21 21 C 1.38706 * 119.05214 * 359.97438 * 18 17 16 22 22 C 1.50703 * 119.65772 * 179.72703 * 21 18 17 23 23 N 1.31840 * 120.68743 * 359.97438 * 21 18 17 24 24 H 1.08996 * 109.47306 * 59.99591 * 1 2 3 25 25 H 1.08998 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46833 * 299.99545 * 1 2 3 27 27 H 1.09004 * 109.46833 * 240.00454 * 2 1 3 28 28 H 1.08994 * 109.47157 * 119.99882 * 2 1 3 29 29 H 1.08998 * 109.47458 * 59.71958 * 3 2 1 30 30 H 1.09006 * 109.47391 * 299.72250 * 3 2 1 31 31 H 1.09008 * 109.47183 * 53.10516 * 5 4 3 32 32 H 1.08995 * 109.47469 * 173.10110 * 5 4 3 33 33 H 0.96996 * 120.00069 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47431 * 306.05035 * 14 4 3 35 35 H 1.09008 * 109.46874 * 186.05042 * 14 4 3 36 36 H 1.07998 * 120.38815 * 359.97438 * 16 15 14 37 37 H 1.07991 * 120.81348 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47005 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46892 * 299.99847 * 20 19 18 40 40 H 1.09002 * 109.47272 * 59.99866 * 20 19 18 41 41 H 1.09007 * 109.46919 * 90.00040 * 22 21 18 42 42 H 1.09007 * 109.47114 * 209.99812 * 22 21 18 43 43 H 1.08999 * 109.47078 * 330.00107 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0067 5 6 4.0299 0.8029 1.2222 6 6 3.6837 1.6467 2.4218 7 1 3.2040 2.6050 2.2876 8 6 3.9797 1.1956 3.6906 9 7 4.5636 0.0285 3.8541 10 14 3.5513 2.2419 5.1776 11 1 2.1832 1.9018 5.6446 12 1 4.5259 1.9776 6.2663 13 1 3.6040 3.6782 4.8040 14 6 4.0409 0.7937 -1.1990 15 6 3.6880 1.6179 -2.4103 16 6 4.5989 2.5357 -2.8997 17 6 4.2674 3.2893 -4.0139 18 6 3.0210 3.0907 -4.5996 19 8 2.6519 3.8065 -5.6944 20 6 3.5955 4.7539 -6.1984 21 6 2.1609 2.1511 -4.0507 22 6 0.8051 1.9293 -4.6704 23 7 2.5151 1.4533 -2.9897 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6726 1.9578 0.8874 30 1 1.6807 1.9550 -0.8925 31 1 3.5837 -0.1856 1.3323 32 1 5.1129 0.7061 1.1463 33 1 4.7714 -0.2890 4.7467 34 1 3.6071 -0.2014 -1.2976 35 1 5.1249 0.7111 -1.1190 36 1 5.5575 2.6636 -2.4190 37 1 4.9591 4.0137 -4.4175 38 1 3.1763 5.2554 -7.0707 39 1 3.8168 5.4916 -5.4271 40 1 4.5129 4.2377 -6.4815 41 1 0.8766 1.1533 -5.4326 42 1 0.0999 1.6178 -3.8998 43 1 0.4583 2.8563 -5.1270 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249909608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:04 Heat of formation + Delta-G solvation = -5.233459 kcal Electronic energy + Delta-G solvation = -22075.589412 eV Core-core repulsion = 18928.151314 eV Total energy + Delta-G solvation = -3147.438098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68545 -38.47323 -36.96405 -33.24255 -32.73642 -32.03510 -31.10717 -28.41205 -27.84182 -26.76448 -25.63163 -23.89152 -22.22422 -21.96422 -21.45465 -19.13357 -18.07364 -17.05695 -16.20925 -16.02639 -15.25003 -15.06058 -14.67606 -14.45159 -14.11794 -13.94205 -13.76513 -13.38613 -13.16817 -12.97573 -12.39209 -12.23219 -12.16282 -11.89123 -11.55934 -11.47114 -11.40099 -11.15601 -10.94897 -10.85624 -10.64920 -10.61207 -10.40390 -9.88533 -9.65023 -9.47343 -9.32964 -9.12429 -8.39270 -8.09329 -7.07956 -5.98457 -3.98823 1.29281 1.37726 3.11176 3.34416 3.40526 3.45012 3.85665 4.42544 4.47896 4.65748 4.72666 4.92457 4.93598 5.17143 5.23028 5.26357 5.37078 5.44307 5.61700 5.69016 5.69945 5.72813 5.75544 5.93502 6.04154 6.10991 6.15462 6.21058 6.32370 6.40039 6.54384 6.57930 6.61785 6.71875 6.89445 7.13072 7.21226 7.36653 7.50995 7.86208 8.13603 8.21375 8.29818 8.60458 9.09301 9.64917 11.12171 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.004259 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.063997 B = 6573.160638 C = 7140.264494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.070 3.930 4 N -0.530 5.530 5 C 0.189 3.811 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.099 3.901 15 C 0.123 3.877 16 C -0.121 4.121 17 C -0.163 4.163 18 C 0.061 3.939 19 O -0.312 6.312 20 C 0.027 3.973 21 C 0.102 3.898 22 C -0.092 4.092 23 N -0.439 5.439 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.005 0.995 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 5.343 -18.813 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C -0.059 4.059 4 N -0.254 5.254 5 C 0.064 3.936 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.030 4.030 15 C -0.015 4.015 16 C -0.141 4.141 17 C -0.189 4.189 18 C 0.014 3.986 19 O -0.224 6.224 20 C -0.069 4.069 21 C -0.037 4.037 22 C -0.149 4.149 23 N -0.150 5.150 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.423 5.113 -18.433 19.433 hybrid contribution 0.572 0.478 0.611 0.964 sum -2.852 5.591 -17.821 18.894 Atomic orbital electron populations 1.21605 0.96706 1.00382 1.00981 1.22074 0.95463 1.00225 1.01836 1.22014 0.87867 0.94811 1.01186 1.62396 1.07146 1.54251 1.01558 1.19802 0.94976 0.93608 0.85218 1.21131 1.38677 1.04215 0.89987 0.92011 1.24961 0.95483 0.95143 0.98957 1.69955 1.42512 1.19037 1.22434 0.86543 0.78036 0.80760 0.82358 1.20782 1.21338 1.19847 1.20955 0.99887 0.94581 0.87584 1.21251 0.88910 0.95529 0.95811 1.21809 1.01399 0.95536 0.95374 1.21619 0.96209 1.02529 0.98534 1.19861 0.94474 0.94862 0.89388 1.86059 1.43273 1.51265 1.41803 1.23042 0.93159 0.91284 0.99409 1.20726 0.96738 0.93042 0.93232 1.20536 0.91666 1.02395 1.00321 1.67475 1.17645 1.23034 1.06807 0.93406 0.93869 0.93163 0.92498 0.91222 0.90763 0.92345 0.97710 0.95775 0.93020 0.93409 0.90116 0.84445 0.84743 0.88305 0.92703 0.92809 0.91016 0.90608 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.16 -3.03 5.28 -26.73 -0.14 -3.18 16 3 C 0.07 1.44 4.89 -3.83 -0.02 1.42 16 4 N -0.53 -11.59 4.69 -237.52 -1.11 -12.70 16 5 C 0.19 4.86 4.53 -4.98 -0.02 4.84 16 6 C -0.50 -14.06 8.39 -34.44 -0.29 -14.35 16 7 H 0.06 1.74 7.36 -52.49 -0.39 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.10 1.84 5.06 -4.98 -0.03 1.81 16 15 C 0.12 2.08 5.70 -82.58 -0.47 1.61 16 16 C -0.12 -1.77 9.71 -39.46 -0.38 -2.15 16 17 C -0.16 -2.07 9.14 -39.14 -0.36 -2.43 16 18 C 0.06 0.83 6.67 -39.07 -0.26 0.57 16 19 O -0.31 -3.58 9.55 -19.46 -0.19 -3.77 16 20 C 0.03 0.20 9.83 101.05 0.99 1.19 16 21 C 0.10 1.51 6.80 -82.41 -0.56 0.95 16 22 C -0.09 -1.08 9.95 36.01 0.36 -0.72 16 23 N -0.44 -7.34 8.71 -5.62 -0.05 -7.39 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 28 H 0.07 1.54 6.29 -51.93 -0.33 1.21 16 29 H 0.07 1.68 6.97 -51.93 -0.36 1.32 16 30 H 0.06 1.17 6.24 -51.93 -0.32 0.84 16 31 H 0.01 0.14 6.02 -51.92 -0.31 -0.17 16 32 H 0.02 0.66 7.91 -51.93 -0.41 0.25 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 0.91 6.06 -51.93 -0.31 0.59 16 35 H 0.08 1.42 7.82 -51.92 -0.41 1.01 16 36 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.13 1.31 6.45 -52.49 -0.34 0.97 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 40 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -30.98 344.01 -8.15 -39.13 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.80 Total: -0.45 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.91 Total: -10.88 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.43 Total: -45.98 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.19 Total: -3.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.98 -8.15 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249909608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.894 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds