Wall clock time and date at job start Tue Mar 31 2020 01:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46972 * 2 1 4 4 N 1.46899 * 109.47433 * 179.72143 * 3 2 1 5 5 C 1.46900 * 110.99921 * 297.90123 * 4 3 2 6 6 C 1.50695 * 109.46936 * 293.10717 * 5 4 3 7 7 H 1.08001 * 120.00291 * 354.97884 * 6 5 4 8 8 C 1.37884 * 120.00072 * 174.98347 * 6 5 4 9 9 N 1.31516 * 120.00063 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47045 * 89.99774 * 10 8 6 12 12 H 1.48499 * 109.47143 * 209.99607 * 10 8 6 13 13 H 1.48500 * 109.47249 * 329.99827 * 10 8 6 14 14 C 1.46901 * 110.99728 * 61.84966 * 4 3 2 15 15 C 1.50697 * 109.46927 * 66.05222 * 14 4 3 16 16 C 1.38261 * 119.55613 * 94.99909 * 15 14 4 17 17 C 1.38538 * 119.22129 * 179.97438 * 16 15 14 18 18 C 1.39142 * 118.37420 * 0.02562 * 17 16 15 19 19 O 1.35912 * 120.47587 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99686 * 359.97438 * 19 18 17 21 21 C 1.38706 * 119.05214 * 359.97438 * 18 17 16 22 22 C 1.50703 * 119.65772 * 179.72703 * 21 18 17 23 23 N 1.31840 * 120.68743 * 359.97438 * 21 18 17 24 24 H 1.08996 * 109.47306 * 59.99591 * 1 2 3 25 25 H 1.08998 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46833 * 299.99545 * 1 2 3 27 27 H 1.09004 * 109.46833 * 240.00454 * 2 1 3 28 28 H 1.08994 * 109.47157 * 119.99882 * 2 1 3 29 29 H 1.08998 * 109.47458 * 59.71958 * 3 2 1 30 30 H 1.09006 * 109.47391 * 299.72250 * 3 2 1 31 31 H 1.09008 * 109.47183 * 53.10516 * 5 4 3 32 32 H 1.08995 * 109.47469 * 173.10110 * 5 4 3 33 33 H 0.96996 * 120.00069 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47431 * 306.05035 * 14 4 3 35 35 H 1.09008 * 109.46874 * 186.05042 * 14 4 3 36 36 H 1.07998 * 120.38815 * 359.97438 * 16 15 14 37 37 H 1.07991 * 120.81348 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47005 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46892 * 299.99847 * 20 19 18 40 40 H 1.09002 * 109.47272 * 59.99866 * 20 19 18 41 41 H 1.09007 * 109.46919 * 90.00040 * 22 21 18 42 42 H 1.09007 * 109.47114 * 209.99812 * 22 21 18 43 43 H 1.08999 * 109.47078 * 330.00107 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0067 5 6 4.0299 0.8029 1.2222 6 6 3.6837 1.6467 2.4218 7 1 3.2040 2.6050 2.2876 8 6 3.9797 1.1956 3.6906 9 7 4.5636 0.0285 3.8541 10 14 3.5513 2.2419 5.1776 11 1 2.1832 1.9018 5.6446 12 1 4.5259 1.9776 6.2663 13 1 3.6040 3.6782 4.8040 14 6 4.0409 0.7937 -1.1990 15 6 3.6880 1.6179 -2.4103 16 6 4.5989 2.5357 -2.8997 17 6 4.2674 3.2893 -4.0139 18 6 3.0210 3.0907 -4.5996 19 8 2.6519 3.8065 -5.6944 20 6 3.5955 4.7539 -6.1984 21 6 2.1609 2.1511 -4.0507 22 6 0.8051 1.9293 -4.6704 23 7 2.5151 1.4533 -2.9897 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6726 1.9578 0.8874 30 1 1.6807 1.9550 -0.8925 31 1 3.5837 -0.1856 1.3323 32 1 5.1129 0.7061 1.1463 33 1 4.7714 -0.2890 4.7467 34 1 3.6071 -0.2014 -1.2976 35 1 5.1249 0.7111 -1.1190 36 1 5.5575 2.6636 -2.4190 37 1 4.9591 4.0137 -4.4175 38 1 3.1763 5.2554 -7.0707 39 1 3.8168 5.4916 -5.4271 40 1 4.5129 4.2377 -6.4815 41 1 0.8766 1.1533 -5.4326 42 1 0.0999 1.6178 -3.8998 43 1 0.4583 2.8563 -5.1270 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249909608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:03 Heat of formation + Delta-G solvation = -24.930351 kcal Electronic energy + Delta-G solvation = -22076.443533 eV Core-core repulsion = 18928.151314 eV Total energy + Delta-G solvation = -3148.292219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75119 -39.63202 -38.45153 -34.84923 -34.37173 -33.40138 -32.43274 -29.86192 -28.62963 -28.42044 -26.97054 -25.58640 -23.71249 -23.24695 -22.75846 -20.80367 -18.98310 -18.36454 -18.09599 -17.02227 -16.80657 -16.53609 -16.18263 -15.96213 -15.35023 -15.23549 -14.92794 -14.72702 -14.40421 -14.19692 -14.14621 -13.34165 -13.26857 -13.17438 -13.02426 -12.83080 -12.64830 -12.62099 -12.51712 -12.34956 -12.27716 -12.17299 -12.12109 -11.80160 -11.29168 -11.26237 -10.59246 -10.57456 -10.44771 -9.19532 -8.85366 -8.16497 -6.25415 0.18278 0.29353 1.41382 1.42070 1.53689 2.28356 2.41677 2.69626 3.15869 3.29167 3.58967 3.68836 3.76849 4.00043 4.18110 4.21485 4.28656 4.39873 4.41469 4.51755 4.55635 4.64842 4.69697 4.74404 4.76162 4.78184 4.82794 4.95114 5.06916 5.07926 5.14354 5.20154 5.21258 5.28412 5.34957 5.45683 5.51951 5.56979 5.70830 6.09962 6.28338 6.36880 6.65560 6.90228 7.10196 7.43362 8.93845 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.004259 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.063997 B = 6573.160638 C = 7140.264494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C 0.078 3.922 4 N -0.536 5.536 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.104 3.896 15 C 0.096 3.904 16 C -0.125 4.125 17 C -0.157 4.157 18 C 0.069 3.931 19 O -0.317 6.317 20 C 0.015 3.985 21 C 0.084 3.916 22 C -0.087 4.087 23 N -0.459 5.459 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.070 0.930 31 H -0.019 1.019 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 7.139 -20.416 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C -0.050 4.050 4 N -0.259 5.259 5 C 0.079 3.921 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.024 4.024 15 C -0.041 4.041 16 C -0.146 4.146 17 C -0.184 4.184 18 C 0.021 3.979 19 O -0.230 6.230 20 C -0.079 4.079 21 C -0.057 4.057 22 C -0.145 4.145 23 N -0.171 5.171 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.088 0.912 31 H -0.001 1.001 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.026 6.920 -20.061 21.599 hybrid contribution 0.770 -0.021 0.923 1.203 sum -3.256 6.899 -19.138 20.602 Atomic orbital electron populations 1.21553 0.94130 1.01688 1.01614 1.21930 0.97687 0.98801 1.00169 1.21903 0.87187 0.95483 1.00408 1.62279 1.07948 1.54235 1.01427 1.19441 0.93447 0.92442 0.86756 1.21383 1.38703 1.04212 0.91189 0.92583 1.25811 0.95182 0.96320 1.01960 1.70075 1.43381 1.20614 1.23280 0.85474 0.78003 0.79167 0.78536 1.20036 1.20639 1.19132 1.20884 0.99834 0.94483 0.87230 1.20935 0.90239 0.97020 0.95933 1.21934 1.01395 0.95172 0.96061 1.21924 0.96553 1.02373 0.97503 1.19924 0.94211 0.94217 0.89561 1.86063 1.44632 1.51562 1.40730 1.23403 0.93320 0.90807 1.00412 1.21167 0.98117 0.93345 0.93038 1.20571 0.90158 1.03388 1.00354 1.67360 1.17756 1.24033 1.07910 0.91793 0.92266 0.93430 0.92236 0.94662 0.93096 0.91196 1.00141 0.97896 0.92781 0.94319 0.89813 0.83474 0.81432 0.85809 0.91970 0.91567 0.89852 0.90968 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.91 71.98 0.71 -3.55 16 2 C -0.15 -5.84 5.28 30.60 0.16 -5.68 16 3 C 0.08 3.33 4.89 86.30 0.42 3.75 16 4 N -0.54 -24.26 4.69 -905.37 -4.24 -28.50 16 5 C 0.21 11.07 4.53 85.56 0.39 11.46 16 6 C -0.52 -29.80 8.39 25.60 0.21 -29.58 16 7 H 0.06 3.23 7.36 -2.91 -0.02 3.21 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 10 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.10 4.01 5.06 85.56 0.43 4.44 16 15 C 0.10 3.24 5.70 42.56 0.24 3.48 16 16 C -0.13 -3.53 9.71 22.35 0.22 -3.31 16 17 C -0.16 -3.63 9.14 22.56 0.21 -3.42 16 18 C 0.07 1.69 6.67 22.60 0.15 1.84 16 19 O -0.32 -6.31 9.55 -92.56 -0.88 -7.19 16 20 C 0.01 0.17 9.83 113.37 1.11 1.28 16 21 C 0.08 2.34 6.80 42.67 0.29 2.63 16 22 C -0.09 -1.91 9.95 71.24 0.71 -1.20 16 23 N -0.46 -15.16 8.71 -171.69 -1.50 -16.65 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.06 2.31 6.33 -2.38 -0.02 2.30 16 28 H 0.03 1.63 6.29 -2.39 -0.02 1.61 16 29 H 0.05 2.37 6.97 -2.39 -0.02 2.35 16 30 H 0.07 2.82 6.24 -2.38 -0.01 2.80 16 31 H -0.02 -1.11 6.02 -2.38 -0.01 -1.12 16 32 H 0.00 0.17 7.91 -2.39 -0.02 0.15 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.04 1.54 6.06 -2.39 -0.01 1.52 16 35 H 0.08 3.08 7.82 -2.38 -0.02 3.06 16 36 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.17 2.63 6.45 -2.92 -0.02 2.61 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.63 7.70 -2.39 -0.02 0.61 16 40 H 0.07 0.60 7.70 -2.39 -0.02 0.59 16 41 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.09 1.64 7.53 -2.39 -0.02 1.62 16 Total: -1.00 -67.94 344.01 2.40 -65.54 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 5.72 Total: -17.09 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -5.45 Total: -101.37 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.88 Total: -7.19 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.94 2.40 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249909608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.605 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds