Wall clock time and date at job start Tue Mar 31 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 N 1.46904 * 109.47055 * 174.87729 * 3 2 1 5 5 C 1.46899 * 110.99888 * 199.71482 * 4 3 2 6 6 C 1.50701 * 109.46664 * 66.04969 * 5 4 3 7 7 H 1.08003 * 120.00548 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99780 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00075 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99875 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47282 * 90.00205 * 10 8 6 12 12 H 1.48504 * 109.47193 * 209.99875 * 10 8 6 13 13 H 1.48497 * 109.47393 * 329.99956 * 10 8 6 14 14 C 1.46900 * 111.00081 * 75.76250 * 4 3 2 15 15 C 1.50693 * 109.47521 * 199.75706 * 14 4 3 16 16 C 1.38832 * 120.76040 * 264.66915 * 15 14 4 17 17 C 1.38047 * 119.28774 * 180.29543 * 16 15 14 18 18 N 1.31966 * 120.83699 * 359.72111 * 17 16 15 19 19 C 1.32248 * 121.64756 * 0.02562 * 18 17 16 20 20 O 1.35670 * 119.68334 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99862 * 0.02643 * 20 19 18 22 22 C 1.53011 * 109.46667 * 179.97438 * 21 20 19 23 23 C 1.38380 * 120.75556 * 84.43999 * 15 14 4 24 24 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46809 * 299.99829 * 1 2 3 26 26 H 1.08995 * 109.47164 * 59.99707 * 1 2 3 27 27 H 1.09005 * 109.46809 * 240.00171 * 2 1 3 28 28 H 1.08995 * 109.47164 * 120.00293 * 2 1 3 29 29 H 1.09000 * 109.47229 * 54.87864 * 3 2 1 30 30 H 1.09002 * 109.47054 * 294.87722 * 3 2 1 31 31 H 1.08998 * 109.46959 * 186.04556 * 5 4 3 32 32 H 1.08993 * 109.47410 * 306.04965 * 5 4 3 33 33 H 0.97003 * 119.99785 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47042 * 79.75434 * 14 4 3 35 35 H 1.09004 * 109.47414 * 319.75919 * 14 4 3 36 36 H 1.08003 * 120.35476 * 0.04148 * 16 15 14 37 37 H 1.08009 * 119.58149 * 179.74677 * 17 16 15 38 38 H 1.09001 * 109.47035 * 299.99217 * 21 20 19 39 39 H 1.09000 * 109.47666 * 59.99734 * 21 20 19 40 40 H 1.09004 * 109.46628 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47244 * 299.99647 * 22 21 20 42 42 H 1.08996 * 109.46638 * 60.00438 * 22 21 20 43 43 H 1.07996 * 120.44716 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1237 5 6 3.9911 2.7492 0.5903 6 6 3.5120 2.9897 1.9988 7 1 2.9058 2.2477 2.4972 8 6 3.8476 4.1572 2.6511 9 7 3.4291 4.3674 3.8801 10 14 4.8966 5.4402 1.7893 11 1 4.0177 6.3913 1.0625 12 1 5.7007 6.1794 2.7956 13 1 5.8054 4.7702 0.8249 14 6 4.1399 1.0682 -1.1460 15 6 5.5518 0.6110 -0.8845 16 6 6.6176 1.4922 -1.0064 17 6 7.8992 1.0393 -0.7656 18 7 8.1194 -0.2144 -0.4175 19 6 7.1301 -1.0821 -0.2862 20 8 7.4020 -2.3617 0.0732 21 6 8.7739 -2.6964 0.2923 22 6 8.8823 -4.1707 0.6873 23 6 5.8151 -0.6957 -0.5129 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6037 1.9821 0.8406 30 1 1.7535 1.9291 -0.9323 31 1 5.0809 2.7582 0.5707 32 1 3.6094 3.5342 -0.0623 33 1 3.6655 5.1886 4.3391 34 1 4.1547 1.9294 -1.8140 35 1 3.5758 0.2587 -1.6093 36 1 6.4462 2.5200 -1.2905 37 1 8.7323 1.7199 -0.8631 38 1 9.3409 -2.5223 -0.6221 39 1 9.1760 -2.0756 1.0930 40 1 9.9288 -4.4261 0.8541 41 1 8.3154 -4.3445 1.6018 42 1 8.4802 -4.7917 -0.1131 43 1 5.0096 -1.4070 -0.4055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250009586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:25 Heat of formation + Delta-G solvation = -9.213198 kcal Electronic energy + Delta-G solvation = -21783.014676 eV Core-core repulsion = 18635.404003 eV Total energy + Delta-G solvation = -3147.610672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41855 -38.20580 -37.04493 -33.43586 -32.86163 -32.04202 -31.58649 -29.68980 -28.15209 -26.50925 -24.25162 -23.34473 -23.09180 -21.42363 -21.06117 -19.83759 -17.84181 -16.92993 -16.53188 -16.17557 -15.69738 -15.07674 -14.81929 -14.51590 -14.17866 -13.84880 -13.73200 -13.64101 -13.16983 -12.78336 -12.57984 -12.45649 -12.22615 -12.04887 -11.93675 -11.62531 -11.44624 -11.34292 -11.11581 -10.80734 -10.72172 -10.71351 -10.27083 -10.01899 -9.83824 -9.45459 -9.30291 -9.22094 -8.59208 -8.24709 -7.47626 -6.06321 -4.03305 1.43935 1.53077 3.14934 3.25840 3.34132 3.34687 3.99560 4.40297 4.50605 4.74643 4.95946 4.99010 5.07954 5.14441 5.26495 5.31755 5.38618 5.41510 5.45662 5.52467 5.57437 5.74654 5.76210 5.77299 5.86634 5.93519 5.98267 6.05539 6.16216 6.21047 6.24232 6.42974 6.60947 6.64270 6.69135 6.73564 6.88671 6.96654 7.45375 7.58390 7.85713 7.99171 8.07167 8.63210 9.02561 9.55269 11.06812 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.005418 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.339090 B = 5166.907444 C = 6378.997321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.060 3.940 4 N -0.521 5.521 5 C 0.159 3.841 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.085 3.915 15 C 0.017 3.983 16 C -0.198 4.198 17 C 0.133 3.867 18 N -0.547 5.547 19 C 0.315 3.685 20 O -0.310 6.310 21 C 0.068 3.932 22 C -0.153 4.153 23 C -0.166 4.166 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.033 0.967 32 H -0.017 1.017 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -11.126 -11.507 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.068 4.068 4 N -0.245 5.245 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.043 4.043 15 C 0.008 3.992 16 C -0.219 4.219 17 C -0.022 4.022 18 N -0.272 5.272 19 C 0.137 3.863 20 O -0.217 6.217 21 C -0.008 4.008 22 C -0.210 4.210 23 C -0.187 4.187 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.001 0.999 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.472 -11.853 -10.798 17.291 hybrid contribution -0.183 1.880 -0.974 2.125 sum 6.290 -9.973 -11.772 16.662 Atomic orbital electron populations 1.21724 0.96348 1.00913 1.01696 1.21536 0.94705 0.97588 1.01832 1.22114 0.87860 0.95973 1.00818 1.61938 1.05113 1.33135 1.24267 1.20272 0.96117 0.83997 0.96311 1.21015 1.32944 1.04049 0.96624 0.90077 1.24883 0.95726 0.97886 0.94736 1.69890 1.46027 1.26324 1.11595 0.86903 0.81191 0.82151 0.79782 1.20357 1.21151 1.19103 1.21100 0.90614 0.99749 0.92852 1.20037 0.95842 0.91803 0.91484 1.21918 0.93345 1.00925 1.05717 1.22231 0.96247 0.90420 0.93315 1.67239 1.35494 1.04714 1.19722 1.19718 0.90006 0.84311 0.92315 1.86213 1.29175 1.23570 1.82790 1.22523 0.80654 0.96276 1.01343 1.21815 1.02429 0.94175 1.02584 1.20824 0.94519 0.97337 1.06062 0.93238 0.92444 0.93345 0.93168 0.91155 0.88790 0.96164 0.94926 0.99903 0.92678 0.94061 0.90197 0.84992 0.82780 0.91975 0.91753 0.90568 0.91596 0.91829 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.80 5.98 -26.73 -0.16 -1.96 16 3 C 0.06 1.10 4.79 -3.82 -0.02 1.08 16 4 N -0.52 -10.48 4.34 -237.52 -1.03 -11.51 16 5 C 0.16 3.76 3.61 -4.98 -0.02 3.75 16 6 C -0.51 -14.26 8.79 -34.44 -0.30 -14.56 16 7 H 0.08 2.49 7.56 -52.48 -0.40 2.09 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 10 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.08 1.40 4.99 -4.98 -0.02 1.37 16 15 C 0.02 0.28 5.06 -104.35 -0.53 -0.25 16 16 C -0.20 -3.17 8.54 -39.43 -0.34 -3.51 16 17 C 0.13 2.01 11.18 -17.56 -0.20 1.81 16 18 N -0.55 -8.94 9.22 -13.33 -0.12 -9.06 16 19 C 0.32 5.23 7.49 -17.12 -0.13 5.10 16 20 O -0.31 -4.73 10.12 -18.71 -0.19 -4.92 16 21 C 0.07 0.82 6.03 37.16 0.22 1.04 16 22 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 23 C -0.17 -2.74 9.76 -39.28 -0.38 -3.12 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.99 6.58 -51.93 -0.34 1.65 16 30 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 31 H 0.03 0.79 5.42 -51.93 -0.28 0.51 16 32 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.08 1.14 6.55 -51.93 -0.34 0.80 16 36 H 0.13 1.99 8.00 -52.48 -0.42 1.57 16 37 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -31.30 349.83 -8.36 -39.66 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.17 Total: 0.54 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.22 Total: -9.93 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.38 Total: -47.26 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.19 Total: -4.92 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.30 -8.36 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250009586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds