Wall clock time and date at job start Tue Mar 31 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 N 1.46904 * 109.47055 * 174.87729 * 3 2 1 5 5 C 1.46899 * 110.99888 * 199.71482 * 4 3 2 6 6 C 1.50701 * 109.46664 * 66.04969 * 5 4 3 7 7 H 1.08003 * 120.00548 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99780 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00075 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99875 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47282 * 90.00205 * 10 8 6 12 12 H 1.48504 * 109.47193 * 209.99875 * 10 8 6 13 13 H 1.48497 * 109.47393 * 329.99956 * 10 8 6 14 14 C 1.46900 * 111.00081 * 75.76250 * 4 3 2 15 15 C 1.50693 * 109.47521 * 199.75706 * 14 4 3 16 16 C 1.38832 * 120.76040 * 264.66915 * 15 14 4 17 17 C 1.38047 * 119.28774 * 180.29543 * 16 15 14 18 18 N 1.31966 * 120.83699 * 359.72111 * 17 16 15 19 19 C 1.32248 * 121.64756 * 0.02562 * 18 17 16 20 20 O 1.35670 * 119.68334 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99862 * 0.02643 * 20 19 18 22 22 C 1.53011 * 109.46667 * 179.97438 * 21 20 19 23 23 C 1.38380 * 120.75556 * 84.43999 * 15 14 4 24 24 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46809 * 299.99829 * 1 2 3 26 26 H 1.08995 * 109.47164 * 59.99707 * 1 2 3 27 27 H 1.09005 * 109.46809 * 240.00171 * 2 1 3 28 28 H 1.08995 * 109.47164 * 120.00293 * 2 1 3 29 29 H 1.09000 * 109.47229 * 54.87864 * 3 2 1 30 30 H 1.09002 * 109.47054 * 294.87722 * 3 2 1 31 31 H 1.08998 * 109.46959 * 186.04556 * 5 4 3 32 32 H 1.08993 * 109.47410 * 306.04965 * 5 4 3 33 33 H 0.97003 * 119.99785 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47042 * 79.75434 * 14 4 3 35 35 H 1.09004 * 109.47414 * 319.75919 * 14 4 3 36 36 H 1.08003 * 120.35476 * 0.04148 * 16 15 14 37 37 H 1.08009 * 119.58149 * 179.74677 * 17 16 15 38 38 H 1.09001 * 109.47035 * 299.99217 * 21 20 19 39 39 H 1.09000 * 109.47666 * 59.99734 * 21 20 19 40 40 H 1.09004 * 109.46628 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47244 * 299.99647 * 22 21 20 42 42 H 1.08996 * 109.46638 * 60.00438 * 22 21 20 43 43 H 1.07996 * 120.44716 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1237 5 6 3.9911 2.7492 0.5903 6 6 3.5120 2.9897 1.9988 7 1 2.9058 2.2477 2.4972 8 6 3.8476 4.1572 2.6511 9 7 3.4291 4.3674 3.8801 10 14 4.8966 5.4402 1.7893 11 1 4.0177 6.3913 1.0625 12 1 5.7007 6.1794 2.7956 13 1 5.8054 4.7702 0.8249 14 6 4.1399 1.0682 -1.1460 15 6 5.5518 0.6110 -0.8845 16 6 6.6176 1.4922 -1.0064 17 6 7.8992 1.0393 -0.7656 18 7 8.1194 -0.2144 -0.4175 19 6 7.1301 -1.0821 -0.2862 20 8 7.4020 -2.3617 0.0732 21 6 8.7739 -2.6964 0.2923 22 6 8.8823 -4.1707 0.6873 23 6 5.8151 -0.6957 -0.5129 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6037 1.9821 0.8406 30 1 1.7535 1.9291 -0.9323 31 1 5.0809 2.7582 0.5707 32 1 3.6094 3.5342 -0.0623 33 1 3.6655 5.1886 4.3391 34 1 4.1547 1.9294 -1.8140 35 1 3.5758 0.2587 -1.6093 36 1 6.4462 2.5200 -1.2905 37 1 8.7323 1.7199 -0.8631 38 1 9.3409 -2.5223 -0.6221 39 1 9.1760 -2.0756 1.0930 40 1 9.9288 -4.4261 0.8541 41 1 8.3154 -4.3445 1.6018 42 1 8.4802 -4.7917 -0.1131 43 1 5.0096 -1.4070 -0.4055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250009586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:25 Heat of formation + Delta-G solvation = -30.386904 kcal Electronic energy + Delta-G solvation = -21783.932837 eV Core-core repulsion = 18635.404003 eV Total energy + Delta-G solvation = -3148.528833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61131 -39.46439 -38.42701 -34.89449 -34.64315 -33.18461 -32.91811 -30.80554 -29.96981 -27.82059 -25.78709 -24.54229 -24.20813 -22.90010 -22.35693 -21.31358 -19.18520 -18.80924 -17.79943 -17.24878 -16.95609 -16.62653 -16.29542 -16.13767 -15.44707 -15.22290 -14.95267 -14.80673 -14.56561 -14.44073 -13.83595 -13.72540 -13.38602 -13.25757 -13.23033 -12.90243 -12.68067 -12.61291 -12.59118 -12.41155 -12.19851 -11.83563 -11.69947 -11.66412 -11.43265 -11.32043 -10.77917 -10.61209 -10.57933 -9.44474 -9.03589 -8.27133 -6.29738 0.23171 0.28442 1.33591 1.36126 1.46376 2.07256 2.34909 2.75106 3.06728 3.31691 3.39516 3.80654 3.97226 4.09788 4.14186 4.17078 4.19115 4.24349 4.30898 4.47047 4.48941 4.53130 4.61343 4.72923 4.79172 4.83072 4.89034 4.94420 4.96167 4.96978 5.05981 5.08913 5.21559 5.25370 5.40295 5.44606 5.50220 5.52261 5.57434 6.00675 6.30662 6.38340 6.64710 6.76665 6.86926 7.33328 8.89626 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.005418 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.339090 B = 5166.907444 C = 6378.997321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.062 3.938 4 N -0.538 5.538 5 C 0.172 3.828 6 C -0.513 4.513 7 H 0.035 0.965 8 C 0.007 3.993 9 N -0.950 5.950 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.242 1.242 14 C 0.088 3.912 15 C 0.004 3.996 16 C -0.209 4.209 17 C 0.131 3.869 18 N -0.556 5.556 19 C 0.302 3.698 20 O -0.321 6.321 21 C 0.062 3.938 22 C -0.146 4.146 23 C -0.178 4.178 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.033 0.967 32 H -0.012 1.012 33 H 0.265 0.735 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.186 0.814 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -11.347 -13.922 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.065 4.065 4 N -0.262 5.262 5 C 0.045 3.955 6 C -0.551 4.551 7 H 0.053 0.947 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.765 3.235 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.165 1.165 14 C -0.039 4.039 15 C -0.005 4.005 16 C -0.229 4.229 17 C -0.024 4.024 18 N -0.281 5.281 19 C 0.124 3.876 20 O -0.229 6.229 21 C -0.013 4.013 22 C -0.203 4.203 23 C -0.199 4.199 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.161 0.839 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.674 -12.108 -13.235 19.510 hybrid contribution -0.577 1.846 -0.182 1.943 sum 7.097 -10.263 -13.416 18.322 Atomic orbital electron populations 1.21695 0.94635 1.02272 1.01656 1.21464 0.96143 0.95305 1.01920 1.22082 0.86861 0.97780 0.99816 1.61812 1.06227 1.31083 1.27091 1.19982 0.95843 0.86074 0.93641 1.21264 1.32010 1.03020 0.98809 0.94684 1.25842 0.97279 1.00481 0.95399 1.70060 1.48030 1.27329 1.13665 0.85789 0.79648 0.79067 0.78984 1.19139 1.21103 1.16527 1.21161 0.90604 1.00972 0.91154 1.20166 0.96183 0.92090 0.92013 1.22144 0.93554 1.01398 1.05826 1.22773 0.97096 0.90411 0.92075 1.67313 1.35547 1.05235 1.20010 1.19933 0.90281 0.84902 0.92464 1.86210 1.31023 1.23045 1.82595 1.22770 0.79271 0.98005 1.01279 1.21831 1.04058 0.91995 1.02441 1.20968 0.94860 0.97669 1.06424 0.91172 0.94020 0.91879 0.90788 0.93233 0.92865 0.94394 0.94881 0.99389 0.92589 0.92762 0.87825 0.83872 0.79695 0.91553 0.92636 0.88079 0.92016 0.91273 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.24 5.98 30.59 0.18 -3.06 16 3 C 0.06 2.26 4.79 86.30 0.41 2.67 16 4 N -0.54 -21.33 4.34 -905.37 -3.93 -25.26 16 5 C 0.17 8.01 3.61 85.56 0.31 8.32 16 6 C -0.51 -29.63 8.79 25.60 0.22 -29.40 16 7 H 0.03 2.28 7.56 -2.91 -0.02 2.26 16 8 C 0.01 0.40 5.47 84.66 0.46 0.87 16 9 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 10 Si 0.94 43.57 27.47 68.60 1.88 45.46 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 14 C 0.09 2.71 4.99 85.55 0.43 3.14 16 15 C 0.00 0.12 5.06 -19.69 -0.10 0.02 16 16 C -0.21 -6.21 8.54 22.37 0.19 -6.02 16 17 C 0.13 3.69 11.18 84.63 0.95 4.63 16 18 N -0.56 -17.40 9.22 -308.95 -2.85 -20.24 16 19 C 0.30 9.80 7.49 84.79 0.63 10.44 16 20 O -0.32 -9.60 10.12 -89.87 -0.91 -10.51 16 21 C 0.06 1.43 6.03 71.99 0.43 1.87 16 22 C -0.15 -2.40 10.28 71.99 0.74 -1.66 16 23 C -0.18 -5.70 9.76 22.47 0.22 -5.48 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.83 6.89 -2.38 -0.02 1.81 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.35 6.58 -2.39 -0.02 2.34 16 30 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 31 H 0.03 1.55 5.42 -2.39 -0.01 1.53 16 32 H -0.01 -0.52 7.55 -2.39 -0.02 -0.54 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.05 1.55 7.93 -2.39 -0.02 1.53 16 35 H 0.10 2.66 6.55 -2.38 -0.02 2.64 16 36 H 0.14 3.87 8.00 -2.91 -0.02 3.85 16 37 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -69.72 349.83 1.20 -68.52 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.91 Total: 18.19 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 5.80 Total: -16.54 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -6.48 Total: -105.11 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.91 Total: -10.51 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.46 kcal Total: -69.72 1.20 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250009586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.129 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds