Wall clock time and date at job start Tue Mar 31 2020 00:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47474 * 2 1 4 4 C 1.52993 * 109.47474 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47175 * 179.97438 * 4 3 2 6 6 C 1.36941 * 119.99645 * 275.63050 * 5 4 3 7 7 H 1.08000 * 120.00008 * 34.01004 * 6 5 4 8 8 C 1.38817 * 120.00035 * 214.00340 * 6 5 4 9 9 N 1.31619 * 119.99798 * 22.94741 * 8 6 5 10 10 Si 1.86790 * 120.00268 * 202.94320 * 8 6 5 11 11 H 1.48500 * 109.47206 * 60.00020 * 10 8 6 12 12 H 1.48493 * 109.47362 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47156 * 300.00643 * 10 8 6 14 14 C 1.46499 * 120.00284 * 95.63599 * 5 4 3 15 15 C 1.50699 * 109.47157 * 270.00017 * 14 5 4 16 16 C 1.38831 * 120.75694 * 270.22436 * 15 14 5 17 17 C 1.38047 * 119.28718 * 180.29630 * 16 15 14 18 18 N 1.31962 * 120.83710 * 359.72342 * 17 16 15 19 19 C 1.32251 * 121.64738 * 359.97438 * 18 17 16 20 20 O 1.35676 * 119.68492 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99697 * 0.02814 * 20 19 18 22 22 C 1.53001 * 109.46857 * 179.97438 * 21 20 19 23 23 C 1.38383 * 120.76072 * 89.99572 * 15 14 5 24 24 H 1.08999 * 109.47793 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47619 * 300.00524 * 1 2 3 26 26 H 1.09005 * 109.46957 * 60.00067 * 1 2 3 27 27 H 1.08997 * 109.47116 * 239.99540 * 2 1 3 28 28 H 1.09000 * 109.46793 * 119.99480 * 2 1 3 29 29 H 1.09001 * 109.46867 * 59.99498 * 3 2 1 30 30 H 1.08997 * 109.46355 * 299.99947 * 3 2 1 31 31 H 1.09003 * 109.47251 * 59.99141 * 4 3 2 32 32 H 1.09005 * 109.46957 * 299.99933 * 4 3 2 33 33 H 0.96999 * 120.00524 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47314 * 149.99954 * 14 5 4 35 35 H 1.09003 * 109.46917 * 29.99824 * 14 5 4 36 36 H 1.08002 * 120.35335 * 0.03765 * 16 15 14 37 37 H 1.08004 * 119.58208 * 179.74165 * 17 16 15 38 38 H 1.08997 * 109.46943 * 299.99593 * 21 20 19 39 39 H 1.08999 * 109.47352 * 59.99932 * 21 20 19 40 40 H 1.09004 * 109.47249 * 180.02562 * 22 21 20 41 41 H 1.09010 * 109.46807 * 299.99751 * 22 21 20 42 42 H 1.08995 * 109.47698 * 59.99166 * 22 21 20 43 43 H 1.07998 * 120.43784 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1763 3.5076 -1.1818 7 1 3.4722 3.3303 -1.9813 8 6 5.2009 4.4288 -1.3508 9 7 6.2918 4.3412 -0.6197 10 14 5.0315 5.7926 -2.6159 11 1 3.8485 6.6281 -2.2877 12 1 6.2534 6.6363 -2.6010 13 1 4.8579 5.1973 -3.9652 14 6 4.4205 3.4732 1.2609 15 6 3.2117 4.1673 1.8337 16 6 2.9285 5.4862 1.5058 17 6 1.8165 6.0943 2.0529 18 7 1.0216 5.4363 2.8754 19 6 1.2547 4.1774 3.2068 20 8 0.4113 3.5391 4.0565 21 6 -0.7018 4.2874 4.5496 22 6 -1.5332 3.4077 5.4855 23 6 2.3559 3.5030 2.6948 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 7.0080 4.9846 -0.7380 34 1 5.2079 4.2049 1.0802 35 1 4.7768 2.7227 1.9666 36 1 3.5737 6.0320 0.8332 37 1 1.5941 7.1216 1.8043 38 1 -0.3405 5.1590 5.0954 39 1 -1.3200 4.6130 3.7131 40 1 -2.3826 3.9783 5.8613 41 1 -1.8945 2.5362 4.9393 42 1 -0.9154 3.0815 6.3220 43 1 2.5439 2.4752 2.9679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250014212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:05 Heat of formation + Delta-G solvation = -17.866085 kcal Electronic energy + Delta-G solvation = -22340.610927 eV Core-core repulsion = 19192.625037 eV Total energy + Delta-G solvation = -3147.985890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.50343 -39.17703 -37.94714 -35.65716 -33.95361 -32.93677 -32.80890 -30.71747 -29.59147 -27.90874 -25.69760 -24.40656 -24.17216 -22.92941 -22.00172 -21.74022 -19.18152 -18.36532 -17.73800 -17.20296 -16.78169 -16.70615 -16.28884 -15.67879 -15.29211 -15.27638 -14.90312 -14.72657 -14.71065 -13.95661 -13.67448 -13.40854 -13.32041 -13.21714 -13.03992 -12.89984 -12.76118 -12.46131 -12.44066 -12.19802 -12.07690 -11.94771 -11.84022 -11.66447 -11.65176 -11.35410 -10.58191 -10.52632 -10.33362 -9.37457 -8.63026 -7.85230 -5.42547 0.30100 0.43806 1.46418 1.49791 1.55929 2.11620 2.50648 2.88618 3.23046 3.44269 3.75114 4.04246 4.11030 4.14393 4.15738 4.24450 4.26283 4.33336 4.41367 4.45640 4.50721 4.54985 4.73636 4.83876 4.87736 4.93016 4.97192 4.98322 5.04873 5.06418 5.12341 5.17316 5.23768 5.38314 5.49163 5.51496 5.60919 5.64210 5.70495 5.78474 6.36030 6.44490 6.92560 7.13126 7.81871 8.33825 9.11561 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.006223 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.785089 B = 4498.674921 C = 5755.434324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.146 3.854 5 N -0.587 5.587 6 C -0.262 4.262 7 H 0.050 0.950 8 C -0.025 4.025 9 N -0.910 5.910 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.173 3.827 15 C -0.005 4.005 16 C -0.201 4.201 17 C 0.130 3.870 18 N -0.557 5.557 19 C 0.305 3.695 20 O -0.319 6.319 21 C 0.062 3.938 22 C -0.145 4.145 23 C -0.191 4.191 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.120 0.880 37 H 0.182 0.818 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -2.128 8.582 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.021 3.979 5 N -0.306 5.306 6 C -0.392 4.392 7 H 0.068 0.932 8 C -0.223 4.223 9 N -0.554 5.554 10 Si 0.773 3.227 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.047 3.953 15 C -0.016 4.016 16 C -0.223 4.223 17 C -0.024 4.024 18 N -0.282 5.282 19 C 0.126 3.874 20 O -0.228 6.228 21 C -0.013 4.013 22 C -0.202 4.202 23 C -0.212 4.212 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.198 0.802 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.569 -1.935 9.017 15.589 hybrid contribution 0.872 0.690 -1.261 1.681 sum -11.698 -1.245 7.756 14.090 Atomic orbital electron populations 1.21716 0.95390 1.01971 1.01147 1.21447 0.96226 0.95770 1.02034 1.22051 0.97514 0.96760 1.00235 1.21030 0.92689 0.85183 0.99005 1.43870 1.75782 1.09361 1.01600 1.19075 1.07137 1.19426 0.93538 0.93197 1.25575 0.93822 1.02845 1.00021 1.70056 1.05053 1.36475 1.43788 0.85694 0.76971 0.80255 0.79745 1.20274 1.21543 1.20599 1.19988 0.92535 0.96842 0.85905 1.21365 0.97036 0.93387 0.89765 1.21923 1.00649 0.96293 1.03393 1.22656 0.89193 0.99956 0.90577 1.67301 1.33177 1.08395 1.19368 1.19851 0.89162 0.88605 0.89740 1.86205 1.37566 1.40741 1.58263 1.22754 0.85619 0.95260 0.97708 1.21824 0.99511 1.00318 0.98529 1.20898 0.95588 1.01697 1.03046 0.91207 0.93457 0.93576 0.92035 0.91456 0.93239 0.94923 0.94619 0.93332 0.93583 0.89469 0.93780 0.86220 0.80154 0.92050 0.92448 0.88073 0.91738 0.91516 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.12 -3.31 5.93 30.59 0.18 -3.13 16 3 C -0.13 -4.58 5.51 30.59 0.17 -4.42 16 4 C 0.15 6.02 5.72 86.38 0.49 6.51 16 5 N -0.59 -28.24 2.44 -706.35 -1.73 -29.97 16 6 C -0.26 -13.86 9.48 84.03 0.80 -13.07 16 7 H 0.05 2.71 7.93 -2.91 -0.02 2.69 16 8 C -0.02 -1.31 4.95 84.86 0.42 -0.89 16 9 N -0.91 -50.41 11.31 21.65 0.24 -50.17 16 10 Si 0.95 42.90 29.61 68.60 2.03 44.94 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.17 7.94 5.50 85.63 0.47 8.41 16 15 C -0.01 -0.21 5.47 -19.69 -0.11 -0.31 16 16 C -0.20 -7.96 9.81 22.37 0.22 -7.74 16 17 C 0.13 4.45 11.18 84.63 0.95 5.40 16 18 N -0.56 -19.52 9.22 -308.95 -2.85 -22.37 16 19 C 0.30 10.91 7.49 84.79 0.63 11.54 16 20 O -0.32 -10.16 10.12 -89.94 -0.91 -11.07 16 21 C 0.06 1.51 6.03 71.98 0.43 1.94 16 22 C -0.14 -2.46 10.28 71.98 0.74 -1.72 16 23 C -0.19 -7.13 7.95 22.47 0.18 -6.96 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.88 6.16 -2.39 -0.01 1.86 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.05 1.85 7.83 -2.38 -0.02 1.83 16 33 H 0.25 13.69 8.31 -92.71 -0.77 12.91 16 34 H 0.09 4.52 5.28 -2.39 -0.01 4.51 16 35 H 0.04 1.91 7.82 -2.39 -0.02 1.89 16 36 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.18 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 39 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.14 4.76 8.02 -2.91 -0.02 4.74 16 Total: -1.00 -59.42 354.27 4.04 -55.38 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.96 Total: 20.60 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 6.29 Total: -7.33 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.33 Total: -102.51 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.91 Total: -11.07 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.94 kcal Total: -59.42 4.04 -55.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250014212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.512 kcal (2) G-P(sol) polarization free energy of solvation -59.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds