Wall clock time and date at job start Tue Mar 31 2020 00:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 C 1.52997 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47216 * 55.00454 * 4 3 2 6 6 O 1.42898 * 109.47130 * 294.99679 * 4 3 2 7 7 C 1.53005 * 109.46757 * 174.99707 * 4 3 2 8 8 N 1.46903 * 109.46801 * 186.61691 * 7 4 3 9 9 C 1.46901 * 110.99939 * 287.08503 * 8 7 4 10 10 C 1.50703 * 109.47085 * 303.92243 * 9 8 7 11 11 H 1.07999 * 120.00143 * 4.72833 * 10 9 8 12 12 C 1.37876 * 119.99528 * 184.72308 * 10 9 8 13 13 N 1.31511 * 120.00367 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47443 * 120.00087 * 14 12 10 17 17 H 1.48499 * 109.47114 * 240.00138 * 14 12 10 18 18 C 1.46902 * 110.99448 * 163.13537 * 8 7 4 19 19 C 1.50709 * 109.46783 * 195.98092 * 18 8 7 20 20 C 1.38674 * 120.41927 * 268.86096 * 19 18 8 21 21 C 1.38629 * 118.41968 * 179.78235 * 20 19 18 22 22 C 1.38229 * 119.15986 * 0.51148 * 21 20 19 23 23 N 1.31852 * 120.76502 * 359.72312 * 22 21 20 24 24 C 1.31889 * 121.72600 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47477 * 300.00570 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00352 * 1 2 3 28 28 H 1.09005 * 109.47477 * 239.99430 * 2 1 3 29 29 H 1.09000 * 109.47128 * 119.99648 * 2 1 3 30 30 H 1.09003 * 109.46998 * 59.99773 * 3 2 1 31 31 H 1.09000 * 109.46707 * 299.99906 * 3 2 1 32 32 H 0.96701 * 114.00029 * 300.00155 * 6 4 3 33 33 H 1.09006 * 109.46729 * 66.62101 * 7 4 3 34 34 H 1.08998 * 109.47510 * 306.61617 * 7 4 3 35 35 H 1.09000 * 109.46949 * 63.92439 * 9 8 7 36 36 H 1.08998 * 109.47235 * 183.92656 * 9 8 7 37 37 H 0.97004 * 120.00250 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.47332 * 315.97634 * 18 8 7 39 39 H 1.08993 * 109.47694 * 75.98384 * 18 8 7 40 40 H 1.08007 * 120.78603 * 0.02562 * 20 19 18 41 41 H 1.07996 * 120.41725 * 180.21245 * 21 20 19 42 42 H 1.07996 * 119.61300 * 179.75164 * 22 21 20 43 43 H 1.07996 * 119.61642 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0458 0.8733 1.2220 7 6 4.0800 2.8795 -0.1252 8 7 5.5404 2.8685 -0.2838 9 6 6.2048 2.5258 0.9808 10 6 5.7652 3.4863 2.0556 11 1 5.0059 4.2243 1.8427 12 6 6.3322 3.4228 3.3108 13 7 7.2570 2.5244 3.5699 14 14 5.7868 4.6129 4.6433 15 1 4.7419 5.5181 4.1011 16 1 5.2348 3.8508 5.7920 17 1 6.9507 5.4164 5.0959 18 6 6.0234 4.1562 -0.8001 19 6 7.4300 3.9946 -1.3165 20 6 8.5145 4.2153 -0.4810 21 6 9.7901 4.0503 -0.9980 22 6 9.9377 3.6843 -2.3228 23 7 8.8833 3.4874 -3.0896 24 6 7.6553 3.6304 -2.6303 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7601 1.3479 2.0146 33 1 3.8162 3.4385 0.7727 34 1 3.6236 3.3522 -0.9948 35 1 5.9352 1.5097 1.2690 36 1 7.2852 2.5928 0.8534 37 1 7.6557 2.4795 4.4530 38 1 5.3749 4.4891 -1.6104 39 1 6.0132 4.8957 0.0006 40 1 8.3686 4.5051 0.5492 41 1 10.6576 4.2105 -0.3750 42 1 10.9281 3.5576 -2.7342 43 1 6.8162 3.4610 -3.2887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252778675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:17 Heat of formation + Delta-G solvation = -27.036408 kcal Electronic energy + Delta-G solvation = -22241.184798 eV Core-core repulsion = 19092.801254 eV Total energy + Delta-G solvation = -3148.383545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71030 -38.08794 -35.83024 -33.72791 -32.63505 -31.98722 -31.13830 -29.38749 -27.05473 -26.06494 -24.20747 -23.04074 -22.42222 -21.28227 -20.71603 -19.73823 -16.76458 -16.42876 -15.91277 -15.62406 -15.56199 -15.01490 -14.54041 -14.51416 -14.15025 -13.67164 -13.24254 -13.21650 -13.02888 -12.75777 -12.47870 -12.40808 -11.86648 -11.56494 -11.44901 -11.28082 -11.08533 -10.97692 -10.81824 -10.50891 -10.47330 -10.40806 -10.27332 -9.93037 -9.59705 -9.21277 -9.12553 -8.90711 -8.50351 -8.31669 -7.15511 -6.03954 -4.12657 1.59216 1.81332 3.20366 3.30412 3.31209 4.24801 4.35459 4.77482 4.87163 5.08043 5.19275 5.25243 5.27368 5.29326 5.33489 5.52148 5.53290 5.61984 5.64579 5.77337 5.80460 5.89209 5.95057 6.00922 6.10602 6.16454 6.20583 6.22844 6.26066 6.40888 6.50368 6.50781 6.68141 6.84597 6.93033 7.18496 7.33988 7.61885 8.00951 8.06638 8.29031 8.33335 8.39949 8.48968 9.00485 9.52508 11.00161 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.006637 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.063321 B = 4217.661979 C = 6217.434302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.118 3.882 5 H 0.092 0.908 6 O -0.546 6.546 7 C 0.026 3.974 8 N -0.531 5.531 9 C 0.170 3.830 10 C -0.547 4.547 11 H 0.053 0.947 12 C 0.068 3.932 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.096 3.904 19 C -0.105 4.105 20 C -0.053 4.053 21 C -0.177 4.177 22 C 0.081 3.919 23 N -0.496 5.496 24 C 0.104 3.896 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.375 0.625 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 1.060 -7.784 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.188 4.188 4 C 0.058 3.942 5 H 0.110 0.890 6 O -0.351 6.351 7 C -0.103 4.103 8 N -0.254 5.254 9 C 0.045 3.955 10 C -0.586 4.586 11 H 0.071 0.929 12 C -0.134 4.134 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.033 4.033 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.197 4.197 22 C -0.076 4.076 23 N -0.205 5.205 24 C -0.053 4.053 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.223 0.777 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.781 -0.044 -9.271 10.431 hybrid contribution -0.782 2.026 2.851 3.584 sum -5.562 1.982 -6.420 8.723 Atomic orbital electron populations 1.21791 0.96582 1.01120 1.01396 1.21439 0.94807 0.96954 1.02515 1.22313 0.97382 0.97039 1.02069 1.21777 0.90192 0.93825 0.88377 0.89044 1.86565 1.76603 1.56645 1.15303 1.22720 0.90169 0.97005 1.00378 1.62585 1.03709 1.26741 1.32393 1.20177 0.94466 0.98314 0.82562 1.21734 1.22342 1.17614 0.96893 0.92851 1.24898 0.94968 0.95293 0.98282 1.69965 1.26505 1.34001 1.21701 0.86757 0.78566 0.81395 0.82548 1.20077 1.20997 1.21123 1.20872 0.90626 0.93458 0.98351 1.20850 0.96718 0.98590 0.94533 1.21743 0.91750 0.94194 1.00271 1.22093 0.98223 1.02438 0.96911 1.22557 0.97394 0.96732 0.90945 1.67609 0.99382 1.14668 1.38801 1.22513 0.93948 0.95277 0.93587 0.93142 0.92986 0.93151 0.92313 0.91305 0.91973 0.91807 0.77726 0.92830 0.92773 0.91689 0.95260 0.92973 0.92108 0.92746 0.84167 0.85443 0.83646 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.12 -1.47 5.83 -26.73 -0.16 -1.62 16 3 C -0.15 -1.95 4.89 -26.73 -0.13 -2.08 16 4 C 0.12 1.92 3.16 -26.73 -0.08 1.84 16 5 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -10.45 9.93 -35.23 -0.35 -10.80 16 7 C 0.03 0.45 4.59 -3.82 -0.02 0.44 16 8 N -0.53 -10.58 4.61 -237.51 -1.09 -11.68 16 9 C 0.17 4.08 4.52 -4.97 -0.02 4.05 16 10 C -0.55 -13.61 7.30 -34.44 -0.25 -13.86 16 11 H 0.05 1.33 5.99 -52.49 -0.31 1.01 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.88 -24.68 13.29 55.43 0.74 -23.94 16 14 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.10 1.74 5.04 -4.97 -0.03 1.72 16 19 C -0.10 -1.89 5.04 -104.48 -0.53 -2.41 16 20 C -0.05 -0.98 8.30 -39.28 -0.33 -1.30 16 21 C -0.18 -2.84 10.11 -39.44 -0.40 -3.24 16 22 C 0.08 1.26 11.18 -17.55 -0.20 1.06 16 23 N -0.50 -8.54 10.36 -13.25 -0.14 -8.67 16 24 C 0.10 1.76 10.87 -17.55 -0.19 1.57 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.37 6.93 9.05 45.56 0.41 7.34 16 33 H 0.05 1.03 5.79 -51.93 -0.30 0.73 16 34 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 35 H 0.07 1.73 5.61 -51.93 -0.29 1.44 16 36 H 0.03 0.78 5.92 -51.93 -0.31 0.47 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 39 H 0.05 1.09 6.80 -51.93 -0.35 0.73 16 40 H 0.14 2.81 7.87 -52.48 -0.41 2.40 16 41 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -28.37 344.94 -8.86 -37.23 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.14 Total: 10.83 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.05 Total: -13.36 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.49 Total: -44.29 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.35 Total: -10.80 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.37 -8.86 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252778675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.194 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds