Wall clock time and date at job start Tue Mar 31 2020 00:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 C 1.52997 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47216 * 55.00454 * 4 3 2 6 6 O 1.42898 * 109.47130 * 294.99679 * 4 3 2 7 7 C 1.53005 * 109.46757 * 174.99707 * 4 3 2 8 8 N 1.46903 * 109.46801 * 186.61691 * 7 4 3 9 9 C 1.46901 * 110.99939 * 287.08503 * 8 7 4 10 10 C 1.50703 * 109.47085 * 303.92243 * 9 8 7 11 11 H 1.07999 * 120.00143 * 4.72833 * 10 9 8 12 12 C 1.37876 * 119.99528 * 184.72308 * 10 9 8 13 13 N 1.31511 * 120.00367 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47443 * 120.00087 * 14 12 10 17 17 H 1.48499 * 109.47114 * 240.00138 * 14 12 10 18 18 C 1.46902 * 110.99448 * 163.13537 * 8 7 4 19 19 C 1.50709 * 109.46783 * 195.98092 * 18 8 7 20 20 C 1.38674 * 120.41927 * 268.86096 * 19 18 8 21 21 C 1.38629 * 118.41968 * 179.78235 * 20 19 18 22 22 C 1.38229 * 119.15986 * 0.51148 * 21 20 19 23 23 N 1.31852 * 120.76502 * 359.72312 * 22 21 20 24 24 C 1.31889 * 121.72600 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47477 * 300.00570 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00352 * 1 2 3 28 28 H 1.09005 * 109.47477 * 239.99430 * 2 1 3 29 29 H 1.09000 * 109.47128 * 119.99648 * 2 1 3 30 30 H 1.09003 * 109.46998 * 59.99773 * 3 2 1 31 31 H 1.09000 * 109.46707 * 299.99906 * 3 2 1 32 32 H 0.96701 * 114.00029 * 300.00155 * 6 4 3 33 33 H 1.09006 * 109.46729 * 66.62101 * 7 4 3 34 34 H 1.08998 * 109.47510 * 306.61617 * 7 4 3 35 35 H 1.09000 * 109.46949 * 63.92439 * 9 8 7 36 36 H 1.08998 * 109.47235 * 183.92656 * 9 8 7 37 37 H 0.97004 * 120.00250 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.47332 * 315.97634 * 18 8 7 39 39 H 1.08993 * 109.47694 * 75.98384 * 18 8 7 40 40 H 1.08007 * 120.78603 * 0.02562 * 20 19 18 41 41 H 1.07996 * 120.41725 * 180.21245 * 21 20 19 42 42 H 1.07996 * 119.61300 * 179.75164 * 22 21 20 43 43 H 1.07996 * 119.61642 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0458 0.8733 1.2220 7 6 4.0800 2.8795 -0.1252 8 7 5.5404 2.8685 -0.2838 9 6 6.2048 2.5258 0.9808 10 6 5.7652 3.4863 2.0556 11 1 5.0059 4.2243 1.8427 12 6 6.3322 3.4228 3.3108 13 7 7.2570 2.5244 3.5699 14 14 5.7868 4.6129 4.6433 15 1 4.7419 5.5181 4.1011 16 1 5.2348 3.8508 5.7920 17 1 6.9507 5.4164 5.0959 18 6 6.0234 4.1562 -0.8001 19 6 7.4300 3.9946 -1.3165 20 6 8.5145 4.2153 -0.4810 21 6 9.7901 4.0503 -0.9980 22 6 9.9377 3.6843 -2.3228 23 7 8.8833 3.4874 -3.0896 24 6 7.6553 3.6304 -2.6303 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7601 1.3479 2.0146 33 1 3.8162 3.4385 0.7727 34 1 3.6236 3.3522 -0.9948 35 1 5.9352 1.5097 1.2690 36 1 7.2852 2.5928 0.8534 37 1 7.6557 2.4795 4.4530 38 1 5.3749 4.4891 -1.6104 39 1 6.0132 4.8957 0.0006 40 1 8.3686 4.5051 0.5492 41 1 10.6576 4.2105 -0.3750 42 1 10.9281 3.5576 -2.7342 43 1 6.8162 3.4610 -3.2887 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252778675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:16 Heat of formation + Delta-G solvation = -45.702607 kcal Electronic energy + Delta-G solvation = -22241.994225 eV Core-core repulsion = 19092.801254 eV Total energy + Delta-G solvation = -3149.192972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05603 -39.52416 -37.29075 -34.88387 -34.55807 -33.40628 -32.48631 -30.73233 -28.83237 -27.30331 -25.88894 -24.37633 -23.89757 -22.48167 -21.93890 -21.33942 -18.57511 -17.81567 -17.33310 -17.03422 -16.90581 -16.59663 -16.17248 -15.91050 -15.49430 -15.01782 -14.67403 -14.49113 -14.22355 -14.10774 -14.03127 -13.86047 -13.29975 -12.95338 -12.85526 -12.79174 -12.61851 -12.39118 -12.15478 -12.11516 -12.01733 -11.82341 -11.51940 -11.43707 -11.38996 -10.71530 -10.55671 -10.38919 -10.17489 -9.80165 -8.86087 -8.03951 -6.20656 0.28841 0.43677 1.35927 1.40217 1.48047 2.41035 2.91285 3.21351 3.46119 3.66010 3.76255 4.01189 4.04070 4.14184 4.20184 4.23728 4.24941 4.27130 4.51004 4.53831 4.58605 4.71874 4.82359 4.83702 4.88013 4.93782 5.00295 5.04221 5.09407 5.26366 5.31263 5.32606 5.45352 5.52041 5.54054 5.56147 5.61520 5.88290 6.01194 6.19078 6.38354 6.64267 7.02523 7.04940 7.09282 7.48443 8.97546 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.006637 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.063321 B = 4217.661979 C = 6217.434302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.118 3.882 5 H 0.085 0.915 6 O -0.567 6.567 7 C 0.028 3.972 8 N -0.534 5.534 9 C 0.190 3.810 10 C -0.535 4.535 11 H 0.055 0.945 12 C 0.020 3.980 13 N -0.922 5.922 14 Si 0.942 3.058 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.288 1.288 18 C 0.100 3.900 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.178 4.178 22 C 0.085 3.915 23 N -0.508 5.508 24 C 0.103 3.897 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.373 0.627 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.037 0.963 36 H -0.001 1.001 37 H 0.259 0.741 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.183 0.817 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 1.807 -9.255 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.176 4.176 4 C 0.059 3.941 5 H 0.103 0.897 6 O -0.373 6.373 7 C -0.101 4.101 8 N -0.257 5.257 9 C 0.064 3.936 10 C -0.574 4.574 11 H 0.073 0.927 12 C -0.180 4.180 13 N -0.563 5.563 14 Si 0.769 3.231 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.214 1.214 18 C -0.029 4.029 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.197 4.197 22 C -0.072 4.072 23 N -0.217 5.217 24 C -0.053 4.053 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.221 0.779 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.167 0.833 42 H 0.200 0.800 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.879 0.715 -10.761 12.283 hybrid contribution -0.401 1.783 3.227 3.709 sum -6.280 2.498 -7.534 10.121 Atomic orbital electron populations 1.21750 0.94763 1.01915 1.02022 1.21413 0.96365 0.96167 1.01680 1.22199 0.94526 0.97861 1.03060 1.21882 0.92481 0.92773 0.86987 0.89717 1.86546 1.77370 1.57222 1.16190 1.22808 0.88570 0.97792 1.00900 1.62499 1.05096 1.28049 1.30011 1.19718 0.92908 0.96690 0.84276 1.21893 1.21455 1.17058 0.96989 0.92665 1.25592 0.95131 0.96746 1.00486 1.70095 1.28084 1.35982 1.22099 0.85763 0.78052 0.79400 0.79907 1.19165 1.20925 1.21402 1.20885 0.91642 0.91853 0.98477 1.20886 0.96402 0.99701 0.95203 1.21684 0.93453 0.95698 0.99285 1.22348 0.97931 1.01747 0.97694 1.23139 0.98600 0.95010 0.90448 1.67696 0.99756 1.14995 1.39202 1.22792 0.94754 0.94574 0.93211 0.92350 0.92890 0.91958 0.92235 0.93143 0.91924 0.89718 0.77880 0.94539 0.89658 0.94506 0.98297 0.93185 0.88936 0.95004 0.86981 0.83285 0.79993 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.75 5.83 30.59 0.18 -2.57 16 3 C -0.14 -3.37 4.89 30.59 0.15 -3.22 16 4 C 0.12 3.78 3.16 30.59 0.10 3.87 16 5 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 6 O -0.57 -22.31 9.93 -148.98 -1.48 -23.79 16 7 C 0.03 0.93 4.59 86.30 0.40 1.33 16 8 N -0.53 -21.27 4.61 -905.33 -4.17 -25.44 16 9 C 0.19 9.44 4.52 85.56 0.39 9.82 16 10 C -0.53 -27.20 7.30 25.60 0.19 -27.02 16 11 H 0.06 2.76 5.99 -2.91 -0.02 2.74 16 12 C 0.02 1.05 5.46 84.65 0.46 1.51 16 13 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 14 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 18 C 0.10 3.59 5.04 85.56 0.43 4.02 16 19 C -0.12 -4.30 5.04 -19.77 -0.10 -4.40 16 20 C -0.07 -2.81 8.30 22.47 0.19 -2.62 16 21 C -0.18 -5.58 10.11 22.36 0.23 -5.36 16 22 C 0.08 2.47 11.18 84.69 0.95 3.41 16 23 N -0.51 -16.49 10.36 -195.85 -2.03 -18.52 16 24 C 0.10 3.36 10.87 84.67 0.92 4.28 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.05 1.35 7.82 -2.39 -0.02 1.33 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.37 14.34 9.05 -74.06 -0.67 13.67 16 33 H 0.04 1.38 5.79 -2.38 -0.01 1.36 16 34 H 0.09 2.36 7.70 -2.39 -0.02 2.34 16 35 H 0.04 2.05 5.61 -2.39 -0.01 2.04 16 36 H 0.00 -0.06 5.92 -2.39 -0.01 -0.08 16 37 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 38 H 0.09 2.70 7.67 -2.39 -0.02 2.68 16 39 H 0.03 1.28 6.80 -2.39 -0.02 1.27 16 40 H 0.11 4.79 7.87 -2.91 -0.02 4.77 16 41 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.17 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -62.18 344.94 0.13 -62.05 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.32 Total: 33.35 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.18 Total: -18.94 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -5.91 Total: -96.86 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.48 Total: -23.79 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -62.18 0.13 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252778675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.347 kcal (2) G-P(sol) polarization free energy of solvation -62.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds