Wall clock time and date at job start Tue Mar 31 2020 00:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 C 1.53005 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47190 * 305.00477 * 4 3 2 6 6 O 1.42902 * 109.47020 * 64.99806 * 4 3 2 7 7 C 1.52999 * 109.47460 * 185.00076 * 4 3 2 8 8 N 1.46896 * 109.47518 * 173.30020 * 7 4 3 9 9 C 1.46900 * 110.99928 * 76.54497 * 8 7 4 10 10 C 1.50707 * 109.46817 * 58.17104 * 9 8 7 11 11 H 1.07999 * 119.99900 * 4.65208 * 10 9 8 12 12 C 1.37875 * 119.99943 * 184.65782 * 10 9 8 13 13 N 1.31513 * 119.99899 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00156 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47092 * 89.99875 * 14 12 10 16 16 H 1.48494 * 109.46970 * 209.99794 * 14 12 10 17 17 H 1.48501 * 109.46975 * 330.00086 * 14 12 10 18 18 C 1.46893 * 111.00284 * 200.50778 * 8 7 4 19 19 C 1.50701 * 109.47265 * 163.82218 * 18 8 7 20 20 C 1.38675 * 120.41771 * 275.56702 * 19 18 8 21 21 C 1.38624 * 118.41960 * 179.77772 * 20 19 18 22 22 C 1.38226 * 119.16118 * 0.52354 * 21 20 19 23 23 N 1.31852 * 120.76463 * 359.71417 * 22 21 20 24 24 C 1.31885 * 121.72434 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.46847 * 299.99853 * 1 2 3 26 26 H 1.08993 * 109.46547 * 59.99717 * 1 2 3 27 27 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47138 * 239.99683 * 2 1 3 29 29 H 1.09002 * 109.47085 * 120.00093 * 2 1 3 30 30 H 1.08998 * 109.47062 * 60.00278 * 3 2 1 31 31 H 1.09003 * 109.47619 * 299.99835 * 3 2 1 32 32 H 0.96703 * 113.99688 * 60.00111 * 6 4 3 33 33 H 1.09002 * 109.47228 * 293.30561 * 7 4 3 34 34 H 1.09003 * 109.46926 * 53.29943 * 7 4 3 35 35 H 1.09000 * 109.46973 * 178.16386 * 9 8 7 36 36 H 1.08997 * 109.47466 * 298.17292 * 9 8 7 37 37 H 0.96995 * 120.00298 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.46967 * 283.81842 * 18 8 7 39 39 H 1.08994 * 109.47600 * 43.81644 * 18 8 7 40 40 H 1.08001 * 120.78710 * 0.03016 * 20 19 18 41 41 H 1.08000 * 120.41794 * 180.22065 * 21 20 19 42 42 H 1.08002 * 119.61879 * 179.74577 * 22 21 20 43 43 H 1.08002 * 119.61896 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8530 0.8427 6 8 4.0469 0.8728 -1.2201 7 6 4.0801 2.8794 0.1264 8 7 5.5401 2.8685 0.2882 9 6 6.2099 2.6094 -0.9933 10 6 5.8058 3.6622 -1.9931 11 1 5.1803 4.4872 -1.6855 12 6 6.2346 3.5721 -3.3003 13 7 5.8816 4.4906 -4.1729 14 14 7.3158 2.1448 -3.8325 15 1 6.4612 1.0226 -4.2965 16 1 8.2031 2.5821 -4.9400 17 1 8.1427 1.6952 -2.6838 18 6 6.0131 4.1246 0.8851 19 6 7.4176 3.9392 1.3988 20 6 7.6395 3.4030 2.6583 21 6 8.9483 3.2463 3.0875 22 6 9.9811 3.6372 2.2561 23 7 9.7325 4.1481 1.0662 24 6 8.5005 4.3069 0.6233 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7619 1.3471 -2.0132 33 1 3.8183 3.4378 -0.7724 34 1 3.6219 3.3529 0.9947 35 1 7.2902 2.6391 -0.8511 36 1 5.9189 1.6263 -1.3632 37 1 6.1829 4.4271 -5.0927 38 1 6.0030 4.9116 0.1310 39 1 5.3582 4.4040 1.7104 40 1 6.8124 3.1105 3.2882 41 1 9.1582 2.8287 4.0611 42 1 11.0035 3.5223 2.5847 43 1 8.3360 4.7294 -0.3570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252778684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:22 Heat of formation + Delta-G solvation = -46.281092 kcal Electronic energy + Delta-G solvation = -22273.338066 eV Core-core repulsion = 19124.120009 eV Total energy + Delta-G solvation = -3149.218057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09369 -39.56811 -37.37729 -34.91087 -34.60492 -33.48098 -32.47277 -30.96253 -29.32898 -27.35504 -25.69328 -24.40863 -23.79548 -22.49143 -21.95826 -21.21736 -19.12229 -17.84800 -17.30110 -17.13790 -16.95265 -16.59605 -16.14531 -15.84807 -15.72635 -15.02416 -14.83886 -14.49389 -14.31443 -14.14537 -14.11423 -13.83592 -13.42906 -13.07642 -12.90039 -12.80003 -12.62496 -12.43056 -12.31190 -12.08558 -12.05426 -11.76668 -11.60534 -11.47931 -11.45149 -10.80058 -10.68285 -10.40627 -10.24931 -9.85682 -8.88812 -8.28826 -6.28488 0.26364 0.46500 1.32649 1.35903 1.46489 2.34273 2.88161 3.08883 3.36832 3.63576 3.68747 3.99559 4.01111 4.10310 4.19778 4.22227 4.24007 4.27101 4.47915 4.55128 4.59147 4.68284 4.72428 4.83443 4.91481 4.96169 4.99088 5.01705 5.07455 5.19925 5.24983 5.27419 5.30667 5.37172 5.49166 5.52591 5.54627 5.60307 5.90513 6.15676 6.38211 6.46248 6.77556 6.94089 7.12018 7.37600 8.86638 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.006564 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.341874 B = 4264.471692 C = 5937.092489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.121 3.879 5 H 0.097 0.903 6 O -0.572 6.572 7 C 0.025 3.975 8 N -0.518 5.518 9 C 0.156 3.844 10 C -0.525 4.525 11 H 0.043 0.957 12 C 0.026 3.974 13 N -0.943 5.943 14 Si 0.930 3.070 15 H -0.263 1.263 16 H -0.292 1.292 17 H -0.268 1.268 18 C 0.097 3.903 19 C -0.120 4.120 20 C -0.061 4.061 21 C -0.166 4.166 22 C 0.075 3.925 23 N -0.520 5.520 24 C 0.085 3.915 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.375 0.625 33 H 0.032 0.968 34 H 0.086 0.914 35 H 0.003 0.997 36 H 0.054 0.946 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.180 0.820 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.310 -6.287 15.629 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.179 4.179 4 C 0.062 3.938 5 H 0.115 0.885 6 O -0.378 6.378 7 C -0.103 4.103 8 N -0.240 5.240 9 C 0.029 3.971 10 C -0.564 4.564 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.584 5.584 14 Si 0.757 3.243 15 H -0.188 1.188 16 H -0.218 1.218 17 H -0.192 1.192 18 C -0.031 4.031 19 C -0.122 4.122 20 C -0.087 4.087 21 C -0.185 4.185 22 C -0.082 4.082 23 N -0.229 5.229 24 C -0.071 4.071 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.176 0.824 41 H 0.190 0.810 42 H 0.197 0.803 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.216 -6.793 15.651 17.362 hybrid contribution -0.492 0.797 -1.628 1.878 sum -3.708 -5.997 14.023 15.696 Atomic orbital electron populations 1.21761 0.95012 1.01927 1.01916 1.21406 0.96200 0.95936 1.01913 1.22212 0.94738 0.98028 1.02942 1.21917 0.92396 0.92462 0.87032 0.88542 1.86469 1.77445 1.57427 1.16446 1.22840 0.88323 0.98088 1.01064 1.62450 1.05199 1.31313 1.25029 1.20202 0.93498 0.96928 0.86476 1.21752 1.30903 1.09455 0.94336 0.93933 1.25544 0.96892 0.97802 0.96957 1.70037 1.47606 1.36479 1.04263 0.85962 0.79762 0.80767 0.77850 1.18766 1.21843 1.19243 1.20926 0.92021 0.91991 0.98167 1.20828 0.96168 0.99476 0.95773 1.21764 0.98553 0.94073 0.94338 1.22490 0.92602 1.00865 1.02523 1.23307 1.01504 0.94297 0.89086 1.67630 1.23549 1.14802 1.16967 1.22559 0.88286 0.97302 0.98956 0.91995 0.93188 0.92219 0.92978 0.91764 0.89728 0.92427 0.77719 0.94958 0.89527 0.97843 0.92794 0.92800 0.95510 0.88630 0.82402 0.81000 0.80265 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.54 5.83 30.59 0.18 -2.37 16 3 C -0.14 -3.34 4.89 30.59 0.15 -3.19 16 4 C 0.12 3.62 3.18 30.60 0.10 3.72 16 5 H 0.10 2.83 8.14 -2.38 -0.02 2.82 16 6 O -0.57 -20.65 10.10 -148.98 -1.50 -22.16 16 7 C 0.03 0.85 4.61 86.30 0.40 1.24 16 8 N -0.52 -19.72 4.58 -905.39 -4.15 -23.87 16 9 C 0.16 7.31 3.74 85.56 0.32 7.62 16 10 C -0.53 -28.18 7.72 25.60 0.20 -27.98 16 11 H 0.04 2.51 6.34 -2.91 -0.02 2.49 16 12 C 0.03 1.50 5.47 84.65 0.46 1.96 16 13 N -0.94 -57.30 13.96 21.45 0.30 -57.00 16 14 Si 0.93 45.62 27.38 68.60 1.88 47.50 16 15 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 H -0.27 -13.14 6.68 99.48 0.66 -12.47 16 18 C 0.10 3.46 4.99 85.56 0.43 3.89 16 19 C -0.12 -4.11 4.92 -19.77 -0.10 -4.21 16 20 C -0.06 -1.60 9.88 22.47 0.22 -1.38 16 21 C -0.17 -3.74 10.11 22.36 0.23 -3.52 16 22 C 0.08 2.04 11.18 84.69 0.95 2.99 16 23 N -0.52 -19.02 10.36 -195.85 -2.03 -21.05 16 24 C 0.09 3.35 9.57 84.67 0.81 4.16 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.30 7.82 -2.39 -0.02 1.28 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.37 13.57 9.05 -74.05 -0.67 12.90 16 33 H 0.03 1.31 6.07 -2.39 -0.01 1.29 16 34 H 0.09 2.39 7.63 -2.39 -0.02 2.37 16 35 H 0.00 0.18 5.76 -2.39 -0.01 0.16 16 36 H 0.05 2.60 4.79 -2.39 -0.01 2.59 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.03 1.14 6.42 -2.39 -0.02 1.12 16 39 H 0.10 2.75 7.66 -2.39 -0.02 2.73 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.12 5.59 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -67.16 342.35 -0.17 -67.33 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.28 Total: 28.26 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.05 Total: -19.01 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.88 Total: -101.92 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.50 Total: -22.16 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -67.16 -0.17 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252778684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.049 kcal (2) G-P(sol) polarization free energy of solvation -67.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds