Wall clock time and date at job start Tue Mar 31 2020 00:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47321 * 301.97813 * 3 2 1 5 5 N 1.46495 * 109.47235 * 179.97438 * 4 3 2 6 6 C 1.45753 * 117.94916 * 90.00443 * 5 4 3 7 7 C 1.52917 * 110.49386 * 160.92590 * 6 5 4 8 8 C 1.53344 * 108.67055 * 50.75122 * 7 6 5 9 9 C 1.53071 * 108.42640 * 292.46954 * 8 7 6 10 10 H 1.08991 * 109.40297 * 288.85915 * 9 8 7 11 11 N 1.46904 * 109.39930 * 169.02801 * 9 8 7 12 12 C 1.46904 * 110.99690 * 150.48307 * 11 9 8 13 13 H 1.08997 * 109.47192 * 33.61555 * 12 11 9 14 14 C 1.50699 * 109.46939 * 153.61668 * 12 11 9 15 15 H 1.08004 * 120.00155 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99831 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00087 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99633 * 179.71989 * 16 14 12 19 19 H 1.48501 * 109.47008 * 60.00539 * 18 16 14 20 20 H 1.48500 * 109.46617 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47615 * 300.00145 * 18 16 14 22 22 C 1.53001 * 109.47362 * 273.61505 * 12 11 9 23 23 C 1.53000 * 109.46949 * 299.79875 * 22 12 11 24 24 C 1.33352 * 117.94689 * 270.00341 * 5 4 3 25 25 O 1.21285 * 118.24850 * 2.22372 * 24 5 4 26 26 H 4.44655 * 5.63478 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46886 * 181.98375 * 3 2 1 28 28 H 1.08999 * 109.46997 * 61.98454 * 3 2 1 29 29 H 1.09003 * 109.46681 * 60.00437 * 4 3 2 30 30 H 1.09002 * 109.47424 * 300.00768 * 4 3 2 31 31 H 1.09001 * 109.30041 * 40.60585 * 6 5 4 32 32 H 1.09003 * 109.29708 * 281.24366 * 6 5 4 33 33 H 1.08994 * 109.60141 * 290.99920 * 7 6 5 34 34 H 1.08994 * 109.60632 * 170.50983 * 7 6 5 35 35 H 1.09002 * 109.67279 * 172.73836 * 8 7 6 36 36 H 1.08999 * 109.70626 * 52.22680 * 8 7 6 37 37 H 1.00891 * 111.00634 * 274.44028 * 11 9 8 38 38 H 0.97003 * 119.99539 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46957 * 59.79871 * 22 12 11 40 40 H 1.08998 * 109.47111 * 179.79810 * 22 12 11 41 41 H 1.09008 * 109.47113 * 180.98833 * 23 22 12 42 42 H 1.08995 * 109.47201 * 300.99104 * 23 22 12 43 43 H 1.09009 * 109.47039 * 60.99314 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7630 1.2236 5 7 4.6213 -0.7629 1.2232 6 6 5.3045 0.3294 1.9049 7 6 6.7514 -0.0554 2.2160 8 6 7.4055 -0.5838 0.9337 9 6 6.7401 -1.9115 0.5629 10 1 7.0434 -2.6796 1.2742 11 7 7.1582 -2.3060 -0.7891 12 6 7.1636 -3.7680 -0.9328 13 1 6.3632 -4.1954 -0.3289 14 6 6.9501 -4.1312 -2.3797 15 1 6.8226 -3.3538 -3.1185 16 6 6.9164 -5.4560 -2.7602 17 7 7.0711 -6.4027 -1.8604 18 14 6.6438 -5.9064 -4.5525 19 1 7.7301 -5.3230 -5.3801 20 1 6.6506 -7.3842 -4.6980 21 1 5.3349 -5.3700 -5.0042 22 6 8.5097 -4.3218 -0.4613 23 6 9.6327 -3.7257 -1.3123 24 6 5.2462 -1.7621 0.5993 25 8 4.5721 -2.5948 0.0308 26 1 -1.0500 0.0000 0.0004 27 1 3.0088 1.0279 0.0356 28 1 3.0095 -0.4819 -0.9072 29 1 2.7935 -1.7903 1.1880 30 1 2.7928 -0.2805 2.1308 31 1 4.7836 0.5552 2.8353 32 1 5.2959 1.2134 1.2672 33 1 6.7669 -0.8316 2.9811 34 1 7.2949 0.8207 2.5696 35 1 8.4705 -0.7419 1.1033 36 1 7.2653 0.1351 0.1265 37 1 6.5721 -1.8760 -1.4888 38 1 7.0470 -7.3347 -2.1281 39 1 8.6658 -4.0560 0.5842 40 1 8.5123 -5.4069 -0.5646 41 1 10.5901 -4.1337 -0.9879 42 1 9.4671 -3.9766 -2.3600 43 1 9.6412 -2.6419 -1.1952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:56 Heat of formation + Delta-G solvation = 13.635636 kcal Electronic energy + Delta-G solvation = -22496.804896 eV Core-core repulsion = 19350.185023 eV Total energy + Delta-G solvation = -3146.619873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40833 -36.58106 -36.16038 -34.91486 -33.24402 -31.74295 -30.49525 -29.39393 -28.09708 -25.70484 -24.50392 -23.22832 -22.71447 -21.76806 -19.05498 -18.45612 -18.20171 -16.77128 -16.36001 -15.96577 -15.47719 -14.82191 -14.40658 -14.12965 -13.99354 -13.92685 -13.44962 -13.21387 -12.99106 -12.89631 -12.61000 -11.99890 -11.88244 -11.59943 -11.42048 -11.25635 -11.09317 -10.84699 -10.75581 -10.59298 -10.42175 -10.28434 -10.13366 -10.09844 -9.60639 -9.36749 -9.33619 -8.69153 -8.57185 -8.36362 -7.26069 -5.89696 -3.92898 2.68050 2.80664 3.05780 3.19417 3.39139 3.42780 3.45941 4.38549 4.49899 4.73375 4.75139 4.83120 5.08005 5.12619 5.17191 5.34888 5.40411 5.43208 5.46362 5.66459 5.82358 5.84553 5.88214 5.91060 5.99453 6.01401 6.26649 6.40756 6.58132 6.60699 6.71880 6.91543 7.25693 7.36449 7.55858 7.56655 7.65211 7.78630 7.88589 7.98201 8.27099 8.41937 8.55464 8.69988 9.12203 9.69532 11.16942 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005590 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.480572 B = 5008.098236 C = 6427.842689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.176 4.176 3 C -0.028 4.028 4 C 0.115 3.885 5 N -0.611 5.611 6 C 0.117 3.883 7 C -0.136 4.136 8 C -0.109 4.109 9 C 0.080 3.920 10 H 0.099 0.901 11 N -0.656 5.656 12 C 0.214 3.786 13 H 0.018 0.982 14 C -0.503 4.503 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.104 4.104 23 C -0.120 4.120 24 C 0.482 3.518 25 O -0.523 6.523 26 H 0.216 0.784 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.334 0.666 38 H 0.259 0.741 39 H 0.007 0.993 40 H 0.087 0.913 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 15.156 9.404 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C -0.066 4.066 4 C -0.008 4.008 5 N -0.347 5.347 6 C -0.006 4.006 7 C -0.174 4.174 8 C -0.147 4.147 9 C -0.035 4.035 10 H 0.117 0.883 11 N -0.286 5.286 12 C 0.107 3.893 13 H 0.036 0.964 14 C -0.542 4.542 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.143 4.143 23 C -0.177 4.177 24 C 0.269 3.731 25 O -0.397 6.397 26 H 0.233 0.767 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.106 0.894 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.749 14.485 9.234 17.582 hybrid contribution -1.405 -0.416 -0.982 1.764 sum -5.154 14.069 8.252 17.106 Atomic orbital electron populations 1.24849 0.95890 1.01505 1.01105 1.22991 0.94326 1.00022 1.00284 1.19078 0.84775 1.01659 1.01076 1.21332 0.80631 1.02286 0.96600 1.47603 1.06043 1.25630 1.55383 1.21361 0.93500 0.89218 0.96550 1.21897 0.94420 1.02064 0.99046 1.21669 1.00586 0.96265 0.96187 1.21675 0.86903 0.98232 0.96666 0.88292 1.61090 1.54172 1.13837 0.99478 1.19233 0.93170 0.80341 0.96545 0.96430 1.21055 1.48660 0.91795 0.92707 0.92699 1.24828 0.95327 0.96451 0.97151 1.69869 1.50401 0.99799 1.32859 0.86669 0.78655 0.77107 0.85600 1.20327 1.21417 1.20478 1.21489 0.95912 1.02768 0.94114 1.21455 0.95592 0.99443 1.01211 1.21932 0.92922 0.80259 0.77997 1.90811 1.65950 1.40367 1.42596 0.76679 0.89752 0.88795 0.89340 0.90731 0.91268 0.92107 0.91120 0.89995 0.90360 0.91283 0.84756 0.93080 0.97381 0.89441 0.96866 0.92617 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.18 -2.26 13.34 -37.12 -0.50 -2.76 16 3 C -0.03 -0.35 6.02 -29.52 -0.18 -0.53 16 4 C 0.12 1.47 5.15 -4.05 -0.02 1.45 16 5 N -0.61 -8.23 2.81 -174.97 -0.49 -8.72 16 6 C 0.12 1.11 6.39 -4.49 -0.03 1.08 16 7 C -0.14 -1.28 6.02 -26.60 -0.16 -1.44 16 8 C -0.11 -1.38 5.64 -26.52 -0.15 -1.53 16 9 C 0.08 1.38 2.54 -69.08 -0.18 1.21 16 10 H 0.10 1.85 7.21 -51.93 -0.37 1.47 16 11 N -0.66 -13.74 5.21 -102.40 -0.53 -14.27 16 12 C 0.21 5.46 1.80 -68.86 -0.12 5.34 16 13 H 0.02 0.53 6.90 -51.93 -0.36 0.17 16 14 C -0.50 -14.04 7.30 -34.44 -0.25 -14.29 16 15 H 0.05 1.53 7.60 -52.48 -0.40 1.13 16 16 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 17 N -0.89 -26.13 11.32 55.43 0.63 -25.51 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.10 -2.54 5.57 -26.73 -0.15 -2.69 16 23 C -0.12 -2.67 9.51 37.16 0.35 -2.32 16 24 C 0.48 8.63 6.89 -11.87 -0.08 8.55 16 25 O -0.52 -12.00 14.64 5.55 0.08 -11.92 16 26 H 0.22 1.63 7.80 -54.09 -0.42 1.21 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.38 7.20 -51.93 -0.37 1.00 16 30 H 0.07 0.75 7.86 -51.93 -0.41 0.35 16 31 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.33 7.29 7.81 -39.30 -0.31 6.98 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.01 0.17 7.59 -51.93 -0.39 -0.22 16 40 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 41 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.05 1.35 7.17 -51.93 -0.37 0.98 16 43 H 0.04 0.90 7.64 -51.92 -0.40 0.50 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -32.14 347.76 -8.13 -40.27 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.05 Total: 5.92 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.99 Total: -8.10 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.40 Total: -48.50 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.14 -8.13 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.910 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds