Wall clock time and date at job start Tue Mar 31 2020 00:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47321 * 301.97813 * 3 2 1 5 5 N 1.46495 * 109.47235 * 179.97438 * 4 3 2 6 6 C 1.45753 * 117.94916 * 90.00443 * 5 4 3 7 7 C 1.52917 * 110.49386 * 160.92590 * 6 5 4 8 8 C 1.53344 * 108.67055 * 50.75122 * 7 6 5 9 9 C 1.53071 * 108.42640 * 292.46954 * 8 7 6 10 10 H 1.08991 * 109.40297 * 288.85915 * 9 8 7 11 11 N 1.46904 * 109.39930 * 169.02801 * 9 8 7 12 12 C 1.46904 * 110.99690 * 150.48307 * 11 9 8 13 13 H 1.08997 * 109.47192 * 33.61555 * 12 11 9 14 14 C 1.50699 * 109.46939 * 153.61668 * 12 11 9 15 15 H 1.08004 * 120.00155 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99831 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00087 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99633 * 179.71989 * 16 14 12 19 19 H 1.48501 * 109.47008 * 60.00539 * 18 16 14 20 20 H 1.48500 * 109.46617 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47615 * 300.00145 * 18 16 14 22 22 C 1.53001 * 109.47362 * 273.61505 * 12 11 9 23 23 C 1.53000 * 109.46949 * 299.79875 * 22 12 11 24 24 C 1.33352 * 117.94689 * 270.00341 * 5 4 3 25 25 O 1.21285 * 118.24850 * 2.22372 * 24 5 4 26 26 H 4.44655 * 5.63478 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46886 * 181.98375 * 3 2 1 28 28 H 1.08999 * 109.46997 * 61.98454 * 3 2 1 29 29 H 1.09003 * 109.46681 * 60.00437 * 4 3 2 30 30 H 1.09002 * 109.47424 * 300.00768 * 4 3 2 31 31 H 1.09001 * 109.30041 * 40.60585 * 6 5 4 32 32 H 1.09003 * 109.29708 * 281.24366 * 6 5 4 33 33 H 1.08994 * 109.60141 * 290.99920 * 7 6 5 34 34 H 1.08994 * 109.60632 * 170.50983 * 7 6 5 35 35 H 1.09002 * 109.67279 * 172.73836 * 8 7 6 36 36 H 1.08999 * 109.70626 * 52.22680 * 8 7 6 37 37 H 1.00891 * 111.00634 * 274.44028 * 11 9 8 38 38 H 0.97003 * 119.99539 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46957 * 59.79871 * 22 12 11 40 40 H 1.08998 * 109.47111 * 179.79810 * 22 12 11 41 41 H 1.09008 * 109.47113 * 180.98833 * 23 22 12 42 42 H 1.08995 * 109.47201 * 300.99104 * 23 22 12 43 43 H 1.09009 * 109.47039 * 60.99314 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7630 1.2236 5 7 4.6213 -0.7629 1.2232 6 6 5.3045 0.3294 1.9049 7 6 6.7514 -0.0554 2.2160 8 6 7.4055 -0.5838 0.9337 9 6 6.7401 -1.9115 0.5629 10 1 7.0434 -2.6796 1.2742 11 7 7.1582 -2.3060 -0.7891 12 6 7.1636 -3.7680 -0.9328 13 1 6.3632 -4.1954 -0.3289 14 6 6.9501 -4.1312 -2.3797 15 1 6.8226 -3.3538 -3.1185 16 6 6.9164 -5.4560 -2.7602 17 7 7.0711 -6.4027 -1.8604 18 14 6.6438 -5.9064 -4.5525 19 1 7.7301 -5.3230 -5.3801 20 1 6.6506 -7.3842 -4.6980 21 1 5.3349 -5.3700 -5.0042 22 6 8.5097 -4.3218 -0.4613 23 6 9.6327 -3.7257 -1.3123 24 6 5.2462 -1.7621 0.5993 25 8 4.5721 -2.5948 0.0308 26 1 -1.0500 0.0000 0.0004 27 1 3.0088 1.0279 0.0356 28 1 3.0095 -0.4819 -0.9072 29 1 2.7935 -1.7903 1.1880 30 1 2.7928 -0.2805 2.1308 31 1 4.7836 0.5552 2.8353 32 1 5.2959 1.2134 1.2672 33 1 6.7669 -0.8316 2.9811 34 1 7.2949 0.8207 2.5696 35 1 8.4705 -0.7419 1.1033 36 1 7.2653 0.1351 0.1265 37 1 6.5721 -1.8760 -1.4888 38 1 7.0470 -7.3347 -2.1281 39 1 8.6658 -4.0560 0.5842 40 1 8.5123 -5.4069 -0.5646 41 1 10.5901 -4.1337 -0.9879 42 1 9.4671 -3.9766 -2.3600 43 1 9.6412 -2.6419 -1.1952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:55 Heat of formation + Delta-G solvation = -7.420280 kcal Electronic energy + Delta-G solvation = -22497.717949 eV Core-core repulsion = 19350.185023 eV Total energy + Delta-G solvation = -3147.532926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70649 -38.14511 -37.50031 -36.20428 -34.65251 -33.42113 -32.14294 -30.43693 -29.55693 -27.54507 -25.62912 -25.13121 -24.00822 -22.84748 -21.01263 -19.67309 -19.12308 -18.36518 -17.68598 -17.50450 -16.94379 -16.48983 -15.70356 -15.47201 -15.42894 -15.17518 -14.84557 -14.65928 -14.38261 -14.14639 -13.87305 -13.74034 -13.54702 -12.89299 -12.81437 -12.72075 -12.66784 -12.37689 -12.23888 -12.10066 -12.00854 -11.83678 -11.44994 -11.35891 -11.25044 -11.07504 -10.86800 -10.73527 -10.50634 -9.70125 -9.04783 -8.07700 -6.17938 1.38086 1.40587 1.47230 1.58053 1.77677 1.86559 2.11127 2.42425 3.21232 3.49300 3.53452 3.66537 3.91805 4.02591 4.13495 4.14295 4.23575 4.41685 4.45444 4.64977 4.66876 4.74799 4.81457 4.84982 4.94385 4.96559 5.00474 5.10613 5.13860 5.25543 5.33799 5.38536 5.47494 5.55327 5.60258 5.71146 5.89482 5.91792 6.28520 6.39725 6.45074 6.65139 6.73898 6.98976 7.23342 7.48229 8.97814 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005590 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.480572 B = 5008.098236 C = 6427.842689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.222 4.222 3 C -0.019 4.019 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.105 3.895 7 C -0.128 4.128 8 C -0.099 4.099 9 C 0.076 3.924 10 H 0.080 0.920 11 N -0.646 5.646 12 C 0.225 3.775 13 H -0.034 1.034 14 C -0.517 4.517 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.099 4.099 23 C -0.106 4.106 24 C 0.479 3.521 25 O -0.589 6.589 26 H 0.250 0.750 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.327 0.673 38 H 0.259 0.741 39 H 0.022 0.978 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 18.213 10.375 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.223 4.223 3 C -0.057 4.057 4 C -0.006 4.006 5 N -0.331 5.331 6 C -0.015 4.015 7 C -0.166 4.166 8 C -0.137 4.137 9 C -0.038 4.038 10 H 0.098 0.902 11 N -0.275 5.275 12 C 0.117 3.883 13 H -0.016 1.016 14 C -0.555 4.555 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.137 4.137 23 C -0.163 4.163 24 C 0.266 3.734 25 O -0.468 6.468 26 H 0.266 0.734 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.595 17.615 10.249 20.694 hybrid contribution -1.553 -1.300 -1.186 2.347 sum -5.149 16.315 9.062 19.360 Atomic orbital electron populations 1.25737 0.96789 0.99702 0.98984 1.23296 0.95008 1.01767 1.02213 1.18924 0.85168 1.02481 0.99108 1.21385 0.80029 1.00676 0.98539 1.47613 1.06607 1.25172 1.53696 1.21814 0.93540 0.88080 0.98113 1.21920 0.94378 1.03425 0.96870 1.21628 1.00655 0.93208 0.98224 1.21813 0.87436 1.00484 0.94070 0.90179 1.61062 1.54209 1.10773 1.01409 1.18907 0.92045 0.82908 0.94457 1.01640 1.21364 1.48371 0.91931 0.93858 0.93200 1.25604 0.95212 0.96496 1.01130 1.70021 1.51240 0.99917 1.34619 0.85713 0.78574 0.76961 0.80994 1.18985 1.20880 1.20680 1.21331 0.96170 1.00760 0.95477 1.21300 0.95607 1.00319 0.99088 1.21919 0.92954 0.80622 0.77881 1.90787 1.67112 1.43142 1.45781 0.73384 0.87143 0.92385 0.93105 0.86957 0.87919 0.89740 0.91449 0.85990 0.89793 0.90709 0.85624 0.93206 0.95894 0.92698 0.94573 0.95014 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.08 19.25 74.32 1.43 -2.64 16 2 C -0.22 -5.57 13.34 31.13 0.42 -5.16 16 3 C -0.02 -0.47 6.02 28.79 0.17 -0.30 16 4 C 0.12 2.94 5.15 86.38 0.45 3.39 16 5 N -0.60 -15.54 2.81 -826.65 -2.32 -17.87 16 6 C 0.11 1.58 6.39 86.49 0.55 2.13 16 7 C -0.13 -1.91 6.02 30.68 0.18 -1.73 16 8 C -0.10 -2.29 5.64 30.73 0.17 -2.12 16 9 C 0.08 2.69 2.54 44.03 0.11 2.80 16 10 H 0.08 3.12 7.21 -2.39 -0.02 3.10 16 11 N -0.65 -27.96 5.21 -477.88 -2.49 -30.45 16 12 C 0.23 12.07 1.80 44.17 0.08 12.15 16 13 H -0.03 -2.15 6.90 -2.39 -0.02 -2.17 16 14 C -0.52 -30.02 7.30 25.60 0.19 -29.83 16 15 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 16 C 0.01 0.83 5.30 84.66 0.45 1.28 16 17 N -0.92 -56.15 11.32 21.45 0.24 -55.90 16 18 Si 0.95 46.48 29.54 68.60 2.03 48.50 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 22 C -0.10 -4.95 5.57 30.59 0.17 -4.78 16 23 C -0.11 -4.69 9.51 71.98 0.68 -4.00 16 24 C 0.48 17.80 6.89 87.71 0.60 18.40 16 25 O -0.59 -29.16 14.64 -3.04 -0.04 -29.20 16 26 H 0.25 3.00 7.80 -4.42 -0.03 2.97 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.68 7.20 -2.39 -0.02 1.66 16 30 H 0.11 1.97 7.86 -2.39 -0.02 1.95 16 31 H 0.10 0.98 7.92 -2.39 -0.02 0.96 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 37 H 0.33 14.87 7.81 -89.70 -0.70 14.17 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.02 1.04 7.59 -2.39 -0.02 1.02 16 40 H 0.05 3.13 6.08 -2.39 -0.01 3.11 16 41 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.03 1.53 7.17 -2.39 -0.02 1.51 16 43 H 0.06 2.40 7.64 -2.38 -0.02 2.38 16 Total: -1.00 -76.44 347.76 3.35 -73.09 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.28 Total: 22.24 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.66 Total: -10.42 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.57 Total: -104.22 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.04 Total: -29.20 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.44 3.35 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.670 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds