Wall clock time and date at job start Tue Mar 31 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46986 * 258.54299 * 3 2 1 5 5 N 1.46499 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.45749 * 117.94902 * 89.99636 * 5 4 3 7 7 C 1.52919 * 110.48649 * 160.92678 * 6 5 4 8 8 C 1.53343 * 108.67638 * 50.75046 * 7 6 5 9 9 C 1.53054 * 108.43878 * 292.48588 * 8 7 6 10 10 H 1.08999 * 109.32834 * 288.79955 * 9 8 7 11 11 N 1.46899 * 109.40203 * 169.01525 * 9 8 7 12 12 C 1.46901 * 111.00333 * 151.61566 * 11 9 8 13 13 H 1.08995 * 109.47170 * 35.62347 * 12 11 9 14 14 C 1.50699 * 109.47152 * 275.62441 * 12 11 9 15 15 H 1.08000 * 119.99994 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00150 * 179.97438 * 14 12 11 17 17 N 1.31519 * 120.00000 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00411 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46711 * 59.99913 * 18 16 14 20 20 H 1.48495 * 109.47182 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46938 * 300.00281 * 18 16 14 22 22 C 1.52997 * 109.46918 * 155.62513 * 12 11 9 23 23 C 1.53007 * 109.47230 * 294.31809 * 22 12 11 24 24 C 1.33353 * 117.94178 * 270.01643 * 5 4 3 25 25 O 1.21283 * 118.24918 * 2.20453 * 24 5 4 26 26 H 4.44651 * 5.63288 * 179.97438 * 4 1 2 27 27 H 1.08993 * 109.47098 * 138.54093 * 3 2 1 28 28 H 1.09000 * 109.46858 * 18.54140 * 3 2 1 29 29 H 1.09004 * 109.47243 * 59.99471 * 4 3 2 30 30 H 1.09003 * 109.46852 * 300.00018 * 4 3 2 31 31 H 1.08999 * 109.29960 * 40.61476 * 6 5 4 32 32 H 1.08999 * 109.13262 * 281.13123 * 6 5 4 33 33 H 1.09001 * 109.60378 * 170.50833 * 7 6 5 34 34 H 1.08998 * 109.60655 * 290.99507 * 7 6 5 35 35 H 1.09002 * 109.67326 * 52.20662 * 8 7 6 36 36 H 1.08998 * 109.67732 * 172.73128 * 8 7 6 37 37 H 1.00901 * 111.00075 * 275.57105 * 11 9 8 38 38 H 0.96999 * 120.00084 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47796 * 54.32117 * 22 12 11 40 40 H 1.09004 * 109.46969 * 174.32281 * 22 12 11 41 41 H 1.09004 * 109.46816 * 58.11574 * 23 22 12 42 42 H 1.09000 * 109.47089 * 178.11401 * 23 22 12 43 43 H 1.08994 * 109.46869 * 298.12037 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.2874 1.4138 5 7 4.6209 0.2887 1.4137 6 6 5.3029 1.5511 1.1580 7 6 6.7498 1.4868 1.6489 8 6 7.4052 0.2222 1.0810 9 6 6.7407 -0.9977 1.7236 10 1 7.0452 -1.0660 2.7680 11 7 7.1601 -2.2129 1.0126 12 6 7.1405 -3.3789 1.9060 13 1 6.3071 -3.2888 2.6027 14 6 8.4342 -3.4435 2.6761 15 1 9.1951 -2.6936 2.5174 16 6 8.6465 -4.4598 3.5832 17 7 7.7202 -5.3732 3.7761 18 14 10.2505 -4.5404 4.5373 19 1 10.4107 -3.3023 5.3416 20 1 10.2306 -5.7189 5.4404 21 1 11.3855 -4.6641 3.5878 22 6 6.9764 -4.6540 1.0767 23 6 5.6009 -4.6531 0.4064 24 6 5.2468 -0.8655 1.6472 25 8 4.5735 -1.8616 1.8066 26 1 -1.0500 0.0002 -0.0001 27 1 3.0090 0.7709 -0.6804 28 1 3.0098 -0.9735 -0.3268 29 1 2.7928 -0.4829 2.0942 30 1 2.7921 1.2616 1.7406 31 1 4.7812 2.3543 1.6786 32 1 5.2945 1.7511 0.0866 33 1 7.2926 2.3667 1.3035 34 1 6.7651 1.4490 2.7381 35 1 7.2646 0.1896 0.0005 36 1 8.4702 0.2249 1.3129 37 1 6.5859 -2.3717 0.1983 38 1 7.8697 -6.0884 4.4141 39 1 7.7528 -4.6932 0.3127 40 1 7.0627 -5.5243 1.7274 41 1 5.5019 -3.7653 -0.2183 42 1 5.4971 -5.5453 -0.2111 43 1 4.8242 -4.6478 1.1710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:03 Heat of formation + Delta-G solvation = 13.068945 kcal Electronic energy + Delta-G solvation = -22591.915631 eV Core-core repulsion = 19445.271185 eV Total energy + Delta-G solvation = -3146.644446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.40292 -36.61248 -36.11378 -34.93217 -33.20176 -31.83932 -30.74837 -29.39666 -27.93806 -26.09487 -24.52031 -23.20025 -22.16026 -21.74132 -19.51989 -18.31666 -18.17425 -16.76767 -16.38215 -15.89098 -15.53148 -14.82091 -14.55496 -14.28611 -14.02740 -13.95052 -13.52304 -13.14870 -13.01032 -12.64825 -12.60766 -12.24675 -11.81151 -11.53921 -11.48715 -11.17430 -11.07265 -10.95072 -10.79030 -10.59201 -10.57094 -10.44455 -10.15347 -9.88719 -9.58197 -9.51461 -9.35361 -8.95834 -8.57806 -8.27029 -7.22537 -5.88031 -3.93187 2.64879 2.76662 3.05316 3.19668 3.37487 3.42210 3.44616 4.35126 4.49355 4.75110 4.78943 4.87399 5.12341 5.13611 5.17220 5.34140 5.37991 5.42938 5.48933 5.73716 5.80934 5.86719 5.92918 5.97271 5.97796 6.07694 6.35437 6.37603 6.40674 6.51805 6.61921 6.65280 7.05649 7.26914 7.32764 7.52787 7.65374 7.66166 7.87282 7.95807 8.33606 8.45476 8.56230 8.76998 9.14219 9.70773 11.17002 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.005018 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.300770 B = 5578.942849 C = 6399.937574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.176 4.176 3 C -0.027 4.027 4 C 0.115 3.885 5 N -0.611 5.611 6 C 0.117 3.883 7 C -0.137 4.137 8 C -0.109 4.109 9 C 0.085 3.915 10 H 0.112 0.888 11 N -0.657 5.657 12 C 0.216 3.784 13 H 0.022 0.978 14 C -0.498 4.498 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.122 4.122 23 C -0.141 4.141 24 C 0.484 3.516 25 O -0.532 6.532 26 H 0.216 0.784 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.321 0.679 38 H 0.259 0.741 39 H 0.036 0.964 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 15.072 -6.575 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.177 4.177 3 C -0.065 4.065 4 C -0.009 4.009 5 N -0.346 5.346 6 C -0.006 4.006 7 C -0.175 4.175 8 C -0.147 4.147 9 C -0.029 4.029 10 H 0.129 0.871 11 N -0.287 5.287 12 C 0.109 3.891 13 H 0.040 0.960 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.160 4.160 23 C -0.199 4.199 24 C 0.272 3.728 25 O -0.407 6.407 26 H 0.233 0.767 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.279 14.437 -6.266 17.340 hybrid contribution -0.407 -0.188 0.551 0.710 sum -7.686 14.249 -5.715 17.169 Atomic orbital electron populations 1.24857 0.95890 1.01759 1.00781 1.22995 0.94324 0.99925 1.00442 1.19071 0.84759 1.03803 0.98872 1.21335 0.80728 1.02784 0.96052 1.47619 1.06000 1.09147 1.71797 1.21383 0.93637 0.85262 1.00337 1.21906 0.94257 0.99466 1.01857 1.21666 1.00939 0.91883 1.00234 1.21608 0.86253 0.93319 1.01715 0.87055 1.61094 1.54677 1.03601 1.09360 1.19273 0.96581 0.83859 0.89395 0.96034 1.21199 1.01690 1.10443 1.20396 0.92214 1.24952 0.96585 0.95846 0.97081 1.69891 1.33353 1.14364 1.35592 0.86638 0.84185 0.77210 0.79758 1.20498 1.21527 1.20365 1.21714 0.92700 1.03124 0.98504 1.21789 1.00233 0.98315 0.99545 1.22057 0.93043 0.82273 0.75472 1.90742 1.66193 1.35245 1.48482 0.76674 0.89746 0.88960 0.89331 0.90732 0.91235 0.92144 0.90015 0.90963 0.91619 0.90123 0.86102 0.93092 0.94563 0.88404 0.95034 0.95118 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.33 19.25 29.55 0.57 -1.76 16 2 C -0.18 -2.17 13.34 -37.12 -0.50 -2.67 16 3 C -0.03 -0.33 6.02 -29.51 -0.18 -0.50 16 4 C 0.11 1.43 5.15 -4.04 -0.02 1.41 16 5 N -0.61 -8.21 2.81 -174.96 -0.49 -8.70 16 6 C 0.12 1.14 6.39 -4.49 -0.03 1.11 16 7 C -0.14 -1.39 6.02 -26.60 -0.16 -1.55 16 8 C -0.11 -1.48 5.63 -26.53 -0.15 -1.63 16 9 C 0.09 1.56 2.54 -69.09 -0.18 1.38 16 10 H 0.11 2.32 7.58 -51.93 -0.39 1.92 16 11 N -0.66 -14.00 5.94 -102.41 -0.61 -14.61 16 12 C 0.22 5.53 1.56 -68.87 -0.11 5.43 16 13 H 0.02 0.64 6.77 -51.93 -0.35 0.29 16 14 C -0.50 -13.81 8.48 -34.44 -0.29 -14.10 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 17 N -0.89 -26.09 11.29 55.43 0.63 -25.47 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.12 -3.04 5.37 -26.73 -0.14 -3.19 16 23 C -0.14 -3.09 9.78 37.16 0.36 -2.73 16 24 C 0.48 8.63 6.90 -11.87 -0.08 8.54 16 25 O -0.53 -11.57 14.51 5.55 0.08 -11.49 16 26 H 0.22 1.53 7.80 -54.09 -0.42 1.10 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.34 7.21 -51.93 -0.37 0.97 16 30 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 31 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.32 6.62 6.14 -39.29 -0.24 6.38 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 2.73 5.94 -51.93 -0.31 2.42 16 41 H 0.03 0.64 6.40 -51.93 -0.33 0.31 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -31.65 348.26 -8.17 -39.82 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.01 Total: 7.37 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.99 Total: -8.77 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.47 Total: -48.78 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.65 -8.17 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.893 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds