Wall clock time and date at job start Tue Mar 31 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46986 * 258.54299 * 3 2 1 5 5 N 1.46499 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.45749 * 117.94902 * 89.99636 * 5 4 3 7 7 C 1.52919 * 110.48649 * 160.92678 * 6 5 4 8 8 C 1.53343 * 108.67638 * 50.75046 * 7 6 5 9 9 C 1.53054 * 108.43878 * 292.48588 * 8 7 6 10 10 H 1.08999 * 109.32834 * 288.79955 * 9 8 7 11 11 N 1.46899 * 109.40203 * 169.01525 * 9 8 7 12 12 C 1.46901 * 111.00333 * 151.61566 * 11 9 8 13 13 H 1.08995 * 109.47170 * 35.62347 * 12 11 9 14 14 C 1.50699 * 109.47152 * 275.62441 * 12 11 9 15 15 H 1.08000 * 119.99994 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00150 * 179.97438 * 14 12 11 17 17 N 1.31519 * 120.00000 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00411 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46711 * 59.99913 * 18 16 14 20 20 H 1.48495 * 109.47182 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46938 * 300.00281 * 18 16 14 22 22 C 1.52997 * 109.46918 * 155.62513 * 12 11 9 23 23 C 1.53007 * 109.47230 * 294.31809 * 22 12 11 24 24 C 1.33353 * 117.94178 * 270.01643 * 5 4 3 25 25 O 1.21283 * 118.24918 * 2.20453 * 24 5 4 26 26 H 4.44651 * 5.63288 * 179.97438 * 4 1 2 27 27 H 1.08993 * 109.47098 * 138.54093 * 3 2 1 28 28 H 1.09000 * 109.46858 * 18.54140 * 3 2 1 29 29 H 1.09004 * 109.47243 * 59.99471 * 4 3 2 30 30 H 1.09003 * 109.46852 * 300.00018 * 4 3 2 31 31 H 1.08999 * 109.29960 * 40.61476 * 6 5 4 32 32 H 1.08999 * 109.13262 * 281.13123 * 6 5 4 33 33 H 1.09001 * 109.60378 * 170.50833 * 7 6 5 34 34 H 1.08998 * 109.60655 * 290.99507 * 7 6 5 35 35 H 1.09002 * 109.67326 * 52.20662 * 8 7 6 36 36 H 1.08998 * 109.67732 * 172.73128 * 8 7 6 37 37 H 1.00901 * 111.00075 * 275.57105 * 11 9 8 38 38 H 0.96999 * 120.00084 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47796 * 54.32117 * 22 12 11 40 40 H 1.09004 * 109.46969 * 174.32281 * 22 12 11 41 41 H 1.09004 * 109.46816 * 58.11574 * 23 22 12 42 42 H 1.09000 * 109.47089 * 178.11401 * 23 22 12 43 43 H 1.08994 * 109.46869 * 298.12037 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.2874 1.4138 5 7 4.6209 0.2887 1.4137 6 6 5.3029 1.5511 1.1580 7 6 6.7498 1.4868 1.6489 8 6 7.4052 0.2222 1.0810 9 6 6.7407 -0.9977 1.7236 10 1 7.0452 -1.0660 2.7680 11 7 7.1601 -2.2129 1.0126 12 6 7.1405 -3.3789 1.9060 13 1 6.3071 -3.2888 2.6027 14 6 8.4342 -3.4435 2.6761 15 1 9.1951 -2.6936 2.5174 16 6 8.6465 -4.4598 3.5832 17 7 7.7202 -5.3732 3.7761 18 14 10.2505 -4.5404 4.5373 19 1 10.4107 -3.3023 5.3416 20 1 10.2306 -5.7189 5.4404 21 1 11.3855 -4.6641 3.5878 22 6 6.9764 -4.6540 1.0767 23 6 5.6009 -4.6531 0.4064 24 6 5.2468 -0.8655 1.6472 25 8 4.5735 -1.8616 1.8066 26 1 -1.0500 0.0002 -0.0001 27 1 3.0090 0.7709 -0.6804 28 1 3.0098 -0.9735 -0.3268 29 1 2.7928 -0.4829 2.0942 30 1 2.7921 1.2616 1.7406 31 1 4.7812 2.3543 1.6786 32 1 5.2945 1.7511 0.0866 33 1 7.2926 2.3667 1.3035 34 1 6.7651 1.4490 2.7381 35 1 7.2646 0.1896 0.0005 36 1 8.4702 0.2249 1.3129 37 1 6.5859 -2.3717 0.1983 38 1 7.8697 -6.0884 4.4141 39 1 7.7528 -4.6932 0.3127 40 1 7.0627 -5.5243 1.7274 41 1 5.5019 -3.7653 -0.2183 42 1 5.4971 -5.5453 -0.2111 43 1 4.8242 -4.6478 1.1710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:02 Heat of formation + Delta-G solvation = -7.486051 kcal Electronic energy + Delta-G solvation = -22592.806962 eV Core-core repulsion = 19445.271185 eV Total energy + Delta-G solvation = -3147.535778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70164 -38.16919 -37.45768 -36.18560 -34.59359 -33.65060 -32.26342 -30.41036 -29.47729 -27.92593 -25.62442 -24.87181 -23.68770 -22.86407 -21.49497 -19.45752 -19.09978 -18.45930 -17.66987 -17.53537 -16.98394 -16.45738 -15.87311 -15.73176 -15.35100 -15.11137 -14.77435 -14.57730 -14.38138 -14.17126 -13.90318 -13.62452 -13.54744 -13.12805 -12.82269 -12.68615 -12.60740 -12.53122 -12.28179 -12.11004 -11.95308 -11.84142 -11.53576 -11.35417 -11.28919 -11.14434 -11.05216 -10.69930 -10.41657 -9.68711 -9.03426 -8.03407 -6.17208 1.42492 1.45249 1.52682 1.59029 1.78238 1.88431 2.12534 2.45513 3.21289 3.51553 3.54457 3.66350 3.92844 4.03362 4.14826 4.15744 4.26604 4.43645 4.46815 4.53798 4.56005 4.65176 4.72320 4.74973 4.85783 4.95842 4.98321 5.10663 5.11277 5.13874 5.24788 5.32285 5.36054 5.40425 5.56826 5.63755 5.77803 5.86585 6.33832 6.38885 6.51390 6.66930 6.85289 6.97901 7.22441 7.51324 9.00229 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.005018 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.300770 B = 5578.942849 C = 6399.937574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.221 4.221 3 C -0.018 4.018 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.107 3.893 7 C -0.129 4.129 8 C -0.100 4.100 9 C 0.081 3.919 10 H 0.076 0.924 11 N -0.654 5.654 12 C 0.227 3.773 13 H -0.026 1.026 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.005 3.995 17 N -0.923 5.923 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.269 1.269 22 C -0.118 4.118 23 C -0.125 4.125 24 C 0.482 3.518 25 O -0.583 6.583 26 H 0.249 0.751 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.324 0.676 38 H 0.259 0.741 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 18.055 -7.751 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.222 4.222 3 C -0.056 4.056 4 C -0.006 4.006 5 N -0.331 5.331 6 C -0.014 4.014 7 C -0.167 4.167 8 C -0.138 4.138 9 C -0.032 4.032 10 H 0.094 0.906 11 N -0.284 5.284 12 C 0.119 3.881 13 H -0.008 1.008 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.193 4.193 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.195 1.195 22 C -0.156 4.156 23 C -0.182 4.182 24 C 0.269 3.731 25 O -0.463 6.463 26 H 0.265 0.735 27 H 0.128 0.872 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.247 17.500 -7.465 20.359 hybrid contribution -0.516 -1.042 0.913 1.478 sum -7.763 16.458 -6.551 19.341 Atomic orbital electron populations 1.25726 0.96792 0.99863 0.98943 1.23293 0.94994 1.01689 1.02176 1.18917 0.85075 1.02968 0.98600 1.21395 0.79818 1.03390 0.96025 1.47606 1.06682 1.09168 1.69624 1.21803 0.93219 0.83812 1.02538 1.21920 0.94718 0.98788 1.01269 1.21619 1.00455 0.91161 1.00603 1.21646 0.87577 0.93969 1.00054 0.90577 1.61043 1.55191 1.03221 1.08927 1.18922 0.94001 0.85910 0.89250 1.00801 1.21490 1.02287 1.10414 1.21035 0.92439 1.25785 1.00004 0.95434 0.98051 1.70061 1.35295 1.14871 1.36125 0.85570 0.80018 0.77360 0.78400 1.19608 1.21311 1.19452 1.21566 0.94537 1.01578 0.97967 1.21595 0.97445 1.00158 0.99008 1.21810 0.92615 0.83057 0.75597 1.90725 1.66971 1.37435 1.51130 0.73503 0.87249 0.91959 0.92865 0.87228 0.87905 0.89467 0.86083 0.91833 0.90469 0.90607 0.85800 0.93242 0.94281 0.91560 0.93654 0.92629 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 19.25 74.32 1.43 -2.40 16 2 C -0.22 -5.18 13.34 31.13 0.42 -4.76 16 3 C -0.02 -0.41 6.02 28.79 0.17 -0.24 16 4 C 0.12 2.82 5.15 86.38 0.45 3.26 16 5 N -0.60 -15.36 2.81 -826.65 -2.32 -17.69 16 6 C 0.11 1.67 6.39 86.49 0.55 2.22 16 7 C -0.13 -2.20 6.02 30.68 0.18 -2.02 16 8 C -0.10 -2.58 5.63 30.73 0.17 -2.41 16 9 C 0.08 3.07 2.54 44.02 0.11 3.19 16 10 H 0.08 3.39 7.58 -2.39 -0.02 3.37 16 11 N -0.65 -28.85 5.94 -477.93 -2.84 -31.69 16 12 C 0.23 12.28 1.56 44.17 0.07 12.35 16 13 H -0.03 -1.62 6.77 -2.39 -0.02 -1.63 16 14 C -0.51 -29.51 8.48 25.60 0.22 -29.29 16 15 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 16 C 0.01 0.29 5.29 84.65 0.45 0.74 16 17 N -0.92 -56.25 11.29 21.45 0.24 -56.00 16 18 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.12 -6.14 5.37 30.60 0.16 -5.97 16 23 C -0.12 -5.62 9.78 71.98 0.70 -4.92 16 24 C 0.48 17.70 6.90 87.71 0.61 18.30 16 25 O -0.58 -27.09 14.51 -3.04 -0.04 -27.14 16 26 H 0.25 2.72 7.80 -4.42 -0.03 2.68 16 27 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.68 7.21 -2.39 -0.02 1.66 16 30 H 0.11 1.88 7.86 -2.39 -0.02 1.86 16 31 H 0.10 1.04 7.92 -2.39 -0.02 1.02 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 35 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.32 13.70 6.14 -89.69 -0.55 13.15 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 3.88 5.94 -2.38 -0.01 3.87 16 41 H 0.04 1.89 6.40 -2.39 -0.02 1.87 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.65 348.26 3.19 -71.47 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.43 Total: 25.81 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.69 Total: -11.96 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.92 Total: -105.38 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.04 Total: -27.14 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.65 3.19 -71.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.981 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds