Wall clock time and date at job start Tue Mar 31 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 H 1.09000 * 109.47584 * 54.55641 * 3 2 1 5 5 C 1.50700 * 109.47201 * 174.56244 * 3 2 1 6 6 H 1.07995 * 120.00542 * 119.99761 * 5 3 2 7 7 C 1.37878 * 119.99771 * 299.99678 * 5 3 2 8 8 N 1.31526 * 119.99933 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00267 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47358 * 90.00004 * 9 7 5 11 11 H 1.48499 * 109.47171 * 210.00381 * 9 7 5 12 12 H 1.48501 * 109.47025 * 329.99936 * 9 7 5 13 13 N 1.46903 * 109.47008 * 294.55999 * 3 2 1 14 14 C 1.46899 * 111.00314 * 100.80227 * 13 3 2 15 15 H 1.09004 * 109.46616 * 340.53201 * 14 13 3 16 16 C 1.52998 * 109.47420 * 100.53026 * 14 13 3 17 17 C 1.52991 * 109.47314 * 294.06271 * 16 14 13 18 18 O 1.42908 * 109.47382 * 175.10879 * 17 16 14 19 19 C 1.50698 * 109.47121 * 220.53785 * 14 13 3 20 20 C 1.38285 * 119.92936 * 139.99946 * 19 14 13 21 21 C 1.38101 * 120.07635 * 179.97438 * 20 19 14 22 22 C 1.38906 * 119.92386 * 0.27535 * 21 20 19 23 23 N 1.39675 * 120.07353 * 179.72545 * 22 21 20 24 24 C 1.38910 * 119.85437 * 359.40426 * 22 21 20 25 25 C 1.38112 * 119.91832 * 0.61516 * 24 22 21 26 26 H 1.09002 * 109.47207 * 65.67306 * 1 2 3 27 27 H 1.08999 * 109.47608 * 185.67562 * 1 2 3 28 28 H 1.09004 * 109.47149 * 305.67291 * 1 2 3 29 29 H 1.08998 * 109.47151 * 240.00141 * 2 1 3 30 30 H 1.08996 * 109.46881 * 119.99522 * 2 1 3 31 31 H 0.96994 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99937 * 224.75736 * 13 3 2 33 33 H 1.09002 * 109.46778 * 54.06144 * 16 14 13 34 34 H 1.09000 * 109.47028 * 174.05612 * 16 14 13 35 35 H 1.09001 * 109.47002 * 295.10718 * 17 16 14 36 36 H 1.08999 * 109.47751 * 55.10721 * 17 16 14 37 37 H 0.96697 * 113.99926 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.95859 * 0.02562 * 20 19 14 39 39 H 1.08003 * 120.03669 * 180.02562 * 21 20 19 40 40 H 0.97007 * 120.00095 * 0.02562 * 23 22 21 41 41 H 0.97000 * 120.00375 * 179.97438 * 23 22 21 42 42 H 1.07991 * 120.04139 * 180.29717 * 24 22 21 43 43 H 1.07998 * 119.95706 * 179.70169 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9838 0.8372 5 6 3.5409 1.4447 0.1346 6 1 4.1519 1.8872 -0.6382 7 6 4.1343 0.8816 1.2446 8 7 3.3904 0.3422 2.1856 9 14 5.9947 0.8849 1.4119 10 1 6.4264 2.1196 2.1150 11 1 6.4237 -0.3042 2.1912 12 1 6.6132 0.8418 0.0625 13 7 1.6604 2.0960 -1.2597 14 6 0.4836 2.9552 -1.0734 15 1 -0.0420 2.6595 -0.1654 16 6 0.9307 4.4134 -0.9518 17 6 1.7443 4.5921 0.3315 18 8 2.2576 5.9246 0.3885 19 6 -0.4375 2.8092 -2.2571 20 6 -1.8063 2.7658 -2.0650 21 6 -2.6532 2.6325 -3.1477 22 6 -2.1285 2.5363 -4.4302 23 7 -2.9819 2.3957 -5.5269 24 6 -0.7534 2.5869 -4.6203 25 6 0.0879 2.7199 -3.5331 26 1 -0.3634 0.4233 -0.9364 27 1 -0.3634 -1.0226 0.1016 28 1 -0.3634 0.5993 0.8349 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.8078 -0.0542 2.9662 32 1 2.4334 2.6195 -1.6427 33 1 1.5461 4.6775 -1.8119 34 1 0.0543 5.0607 -0.9196 35 1 1.1044 4.4120 1.1953 36 1 2.5722 3.8832 0.3386 37 1 2.7846 6.1096 1.1778 38 1 -2.2134 2.8370 -1.0672 39 1 -3.7221 2.5991 -2.9970 40 1 -3.9423 2.3655 -5.3935 41 1 -2.6144 2.3289 -6.4221 42 1 -0.3424 2.5172 -5.6166 43 1 1.1573 2.7545 -3.6798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:32 Heat of formation + Delta-G solvation = -38.585610 kcal Electronic energy + Delta-G solvation = -22401.488683 eV Core-core repulsion = 19252.604327 eV Total energy + Delta-G solvation = -3148.884356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.33943 -37.47142 -35.89492 -34.50304 -32.89702 -31.40655 -30.55451 -29.25383 -28.55265 -26.28884 -23.90277 -22.68962 -22.41422 -21.44918 -19.90547 -19.34131 -17.01815 -16.95357 -16.63009 -16.48233 -15.20032 -15.01553 -14.61922 -13.95988 -13.86620 -13.72751 -13.29188 -13.13654 -12.97611 -12.81936 -12.44516 -12.20349 -12.07808 -11.45516 -11.28784 -11.10123 -11.08058 -10.85602 -10.76216 -10.48161 -10.43475 -10.14855 -9.99410 -9.61046 -9.44883 -9.33076 -8.82402 -8.55415 -8.44803 -7.24139 -7.17609 -6.05196 -4.13128 1.80634 1.97039 3.25877 3.34060 3.37608 3.97959 4.20694 4.37295 4.66117 5.13800 5.23264 5.29888 5.34322 5.48153 5.62719 5.77691 5.82221 5.87798 6.02785 6.12051 6.14914 6.23214 6.41504 6.42253 6.49657 6.54242 6.60270 6.64880 6.72163 6.84047 7.10398 7.19320 7.20445 7.22738 7.48916 7.61676 7.68143 7.76335 7.83178 7.94169 8.01647 8.28267 8.41511 8.68321 9.01225 9.53272 10.98910 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.005057 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.459405 B = 5535.286173 C = 6171.501895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.011 0.989 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.133 3.867 15 H 0.075 0.925 16 C -0.132 4.132 17 C 0.063 3.937 18 O -0.583 6.583 19 C -0.104 4.104 20 C -0.072 4.072 21 C -0.201 4.201 22 C 0.200 3.800 23 N -0.886 5.886 24 C -0.201 4.201 25 C -0.043 4.043 26 H 0.048 0.952 27 H 0.025 0.975 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.375 0.625 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.393 0.607 41 H 0.393 0.607 42 H 0.112 0.888 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 5.461 -8.696 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.029 0.971 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.022 3.978 15 H 0.093 0.907 16 C -0.171 4.171 17 C -0.014 4.014 18 O -0.388 6.388 19 C -0.106 4.106 20 C -0.092 4.092 21 C -0.224 4.224 22 C 0.097 3.903 23 N -0.426 5.426 24 C -0.224 4.224 25 C -0.062 4.062 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.220 0.780 41 H 0.221 0.779 42 H 0.130 0.870 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.274 4.851 -9.254 14.653 hybrid contribution 1.358 0.457 0.917 1.702 sum -8.915 5.308 -8.336 13.310 Atomic orbital electron populations 1.21821 0.99582 0.98572 1.00028 1.21526 0.91552 0.99631 1.01666 1.19214 0.93988 0.91194 0.84466 0.97136 1.21441 0.91628 1.38333 1.05031 0.92385 1.24903 0.97950 0.95052 0.95776 1.69895 1.34770 1.38294 1.09361 0.86613 0.85864 0.77460 0.78163 1.20835 1.21253 1.19874 1.60760 1.06726 1.32404 1.31182 1.20403 0.92788 0.89702 0.94899 0.90661 1.22155 0.99599 0.97861 0.97468 1.22477 0.98338 0.83468 0.97109 1.86369 1.72750 1.31853 1.47863 1.19689 0.93027 1.03096 0.94821 1.20742 0.92895 0.97653 0.97872 1.20412 0.99018 1.11680 0.91250 1.17728 0.90169 0.94827 0.87571 1.42392 1.07798 1.85719 1.06708 1.20546 0.91400 1.11329 0.99108 1.20709 0.99422 0.94741 0.91279 0.93278 0.95613 0.94817 0.94572 0.89491 0.92919 0.84926 0.91389 0.92082 0.94380 0.90407 0.77875 0.86710 0.87040 0.77981 0.77911 0.86975 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.79 37.16 0.33 -2.62 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.22 5.11 1.07 -68.86 -0.07 5.03 16 4 H 0.01 0.28 6.45 -51.93 -0.34 -0.06 16 5 C -0.53 -13.47 7.81 -34.44 -0.27 -13.74 16 6 H 0.06 1.48 7.41 -52.49 -0.39 1.09 16 7 C 0.07 1.72 5.29 -17.81 -0.09 1.63 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.68 -13.51 4.93 -102.17 -0.50 -14.01 16 14 C 0.13 2.33 1.38 -68.87 -0.09 2.23 16 15 H 0.08 1.41 6.29 -51.93 -0.33 1.09 16 16 C -0.13 -2.21 4.88 -26.74 -0.13 -2.34 16 17 C 0.06 1.12 6.26 37.15 0.23 1.36 16 18 O -0.58 -9.74 13.66 -35.23 -0.48 -10.22 16 19 C -0.10 -1.68 4.35 -104.59 -0.46 -2.13 16 20 C -0.07 -1.08 9.66 -39.61 -0.38 -1.46 16 21 C -0.20 -2.71 9.90 -39.38 -0.39 -3.10 16 22 C 0.20 2.60 6.75 -83.79 -0.57 2.03 16 23 N -0.89 -8.34 9.09 32.41 0.29 -8.05 16 24 C -0.20 -2.80 9.90 -39.38 -0.39 -3.19 16 25 C -0.04 -0.66 9.31 -39.61 -0.37 -1.03 16 26 H 0.05 0.98 6.70 -51.93 -0.35 0.64 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.68 7.97 -51.93 -0.41 0.27 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 2.31 5.94 -51.93 -0.31 2.00 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.33 6.63 7.25 -39.29 -0.28 6.34 16 33 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.58 5.68 -51.93 -0.30 1.28 16 37 H 0.38 4.75 9.12 45.56 0.42 5.17 16 38 H 0.11 1.57 8.03 -52.48 -0.42 1.15 16 39 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.39 2.96 8.84 -40.82 -0.36 2.60 16 41 H 0.39 3.02 8.84 -40.82 -0.36 2.66 16 42 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.90 7.71 -52.49 -0.40 1.50 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -28.63 341.87 -8.65 -37.28 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -5.92 Total: 17.83 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.80 Total: -19.96 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.42 Total: -45.63 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.48 Total: -10.22 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.63 -8.65 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.305 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds