Wall clock time and date at job start Tue Mar 31 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 H 1.09000 * 109.47584 * 54.55641 * 3 2 1 5 5 C 1.50700 * 109.47201 * 174.56244 * 3 2 1 6 6 H 1.07995 * 120.00542 * 119.99761 * 5 3 2 7 7 C 1.37878 * 119.99771 * 299.99678 * 5 3 2 8 8 N 1.31526 * 119.99933 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00267 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47358 * 90.00004 * 9 7 5 11 11 H 1.48499 * 109.47171 * 210.00381 * 9 7 5 12 12 H 1.48501 * 109.47025 * 329.99936 * 9 7 5 13 13 N 1.46903 * 109.47008 * 294.55999 * 3 2 1 14 14 C 1.46899 * 111.00314 * 100.80227 * 13 3 2 15 15 H 1.09004 * 109.46616 * 340.53201 * 14 13 3 16 16 C 1.52998 * 109.47420 * 100.53026 * 14 13 3 17 17 C 1.52991 * 109.47314 * 294.06271 * 16 14 13 18 18 O 1.42908 * 109.47382 * 175.10879 * 17 16 14 19 19 C 1.50698 * 109.47121 * 220.53785 * 14 13 3 20 20 C 1.38285 * 119.92936 * 139.99946 * 19 14 13 21 21 C 1.38101 * 120.07635 * 179.97438 * 20 19 14 22 22 C 1.38906 * 119.92386 * 0.27535 * 21 20 19 23 23 N 1.39675 * 120.07353 * 179.72545 * 22 21 20 24 24 C 1.38910 * 119.85437 * 359.40426 * 22 21 20 25 25 C 1.38112 * 119.91832 * 0.61516 * 24 22 21 26 26 H 1.09002 * 109.47207 * 65.67306 * 1 2 3 27 27 H 1.08999 * 109.47608 * 185.67562 * 1 2 3 28 28 H 1.09004 * 109.47149 * 305.67291 * 1 2 3 29 29 H 1.08998 * 109.47151 * 240.00141 * 2 1 3 30 30 H 1.08996 * 109.46881 * 119.99522 * 2 1 3 31 31 H 0.96994 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99937 * 224.75736 * 13 3 2 33 33 H 1.09002 * 109.46778 * 54.06144 * 16 14 13 34 34 H 1.09000 * 109.47028 * 174.05612 * 16 14 13 35 35 H 1.09001 * 109.47002 * 295.10718 * 17 16 14 36 36 H 1.08999 * 109.47751 * 55.10721 * 17 16 14 37 37 H 0.96697 * 113.99926 * 179.97438 * 18 17 16 38 38 H 1.08006 * 119.95859 * 0.02562 * 20 19 14 39 39 H 1.08003 * 120.03669 * 180.02562 * 21 20 19 40 40 H 0.97007 * 120.00095 * 0.02562 * 23 22 21 41 41 H 0.97000 * 120.00375 * 179.97438 * 23 22 21 42 42 H 1.07991 * 120.04139 * 180.29717 * 24 22 21 43 43 H 1.07998 * 119.95706 * 179.70169 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9838 0.8372 5 6 3.5409 1.4447 0.1346 6 1 4.1519 1.8872 -0.6382 7 6 4.1343 0.8816 1.2446 8 7 3.3904 0.3422 2.1856 9 14 5.9947 0.8849 1.4119 10 1 6.4264 2.1196 2.1150 11 1 6.4237 -0.3042 2.1912 12 1 6.6132 0.8418 0.0625 13 7 1.6604 2.0960 -1.2597 14 6 0.4836 2.9552 -1.0734 15 1 -0.0420 2.6595 -0.1654 16 6 0.9307 4.4134 -0.9518 17 6 1.7443 4.5921 0.3315 18 8 2.2576 5.9246 0.3885 19 6 -0.4375 2.8092 -2.2571 20 6 -1.8063 2.7658 -2.0650 21 6 -2.6532 2.6325 -3.1477 22 6 -2.1285 2.5363 -4.4302 23 7 -2.9819 2.3957 -5.5269 24 6 -0.7534 2.5869 -4.6203 25 6 0.0879 2.7199 -3.5331 26 1 -0.3634 0.4233 -0.9364 27 1 -0.3634 -1.0226 0.1016 28 1 -0.3634 0.5993 0.8349 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.8078 -0.0542 2.9662 32 1 2.4334 2.6195 -1.6427 33 1 1.5461 4.6775 -1.8119 34 1 0.0543 5.0607 -0.9196 35 1 1.1044 4.4120 1.1953 36 1 2.5722 3.8832 0.3386 37 1 2.7846 6.1096 1.1778 38 1 -2.2134 2.8370 -1.0672 39 1 -3.7221 2.5991 -2.9970 40 1 -3.9423 2.3655 -5.3935 41 1 -2.6144 2.3289 -6.4221 42 1 -0.3424 2.5172 -5.6166 43 1 1.1573 2.7545 -3.6798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:32 Heat of formation + Delta-G solvation = -58.839246 kcal Electronic energy + Delta-G solvation = -22402.366946 eV Core-core repulsion = 19252.604327 eV Total energy + Delta-G solvation = -3149.762619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52282 -38.85958 -37.36243 -35.86467 -34.35212 -33.21505 -31.64927 -30.86924 -29.75589 -28.01983 -25.38663 -24.36715 -23.63358 -22.68014 -21.24537 -21.15509 -18.63220 -18.29594 -17.77343 -17.57632 -16.85450 -16.38742 -16.22572 -15.51265 -15.31017 -14.98065 -14.69446 -14.43553 -14.23751 -14.08424 -13.83841 -13.79259 -13.64546 -13.18078 -12.94337 -12.71012 -12.64849 -12.52927 -12.29093 -12.00448 -11.98265 -11.60605 -11.42016 -11.21434 -11.05389 -10.84236 -10.73493 -10.44839 -9.65054 -8.89660 -8.18442 -8.05829 -6.20058 0.71401 0.85995 1.41414 1.44787 1.53312 2.43985 3.06676 3.16393 3.19943 3.38092 3.75961 4.11428 4.16361 4.19416 4.30539 4.44786 4.51157 4.63248 4.67247 4.75215 4.78074 4.85306 4.89405 4.92181 5.09923 5.13851 5.20868 5.25316 5.35026 5.41230 5.55607 5.59256 5.68819 5.74134 5.78576 6.00031 6.07525 6.15689 6.34986 6.58076 6.74770 6.82388 6.90340 7.12539 7.13668 7.49812 8.96433 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.005057 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.459405 B = 5535.286173 C = 6171.501895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C 0.231 3.769 4 H -0.012 1.012 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.143 3.857 15 H 0.060 0.940 16 C -0.123 4.123 17 C 0.071 3.929 18 O -0.588 6.588 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.205 4.205 22 C 0.204 3.796 23 N -0.871 5.871 24 C -0.210 4.210 25 C -0.055 4.055 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.392 0.608 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.405 0.595 41 H 0.404 0.596 42 H 0.130 0.870 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 5.969 -10.160 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.122 3.878 4 H 0.006 0.994 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.305 5.305 14 C 0.032 3.968 15 H 0.079 0.921 16 C -0.162 4.162 17 C -0.006 4.006 18 O -0.396 6.396 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.228 4.228 22 C 0.099 3.901 23 N -0.412 5.412 24 C -0.232 4.232 25 C -0.074 4.074 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.241 0.759 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.234 0.766 41 H 0.233 0.767 42 H 0.148 0.852 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.442 5.373 -10.748 16.592 hybrid contribution 1.647 0.332 1.302 2.126 sum -9.795 5.706 -9.446 14.755 Atomic orbital electron populations 1.21648 0.97063 0.99491 1.00326 1.21399 0.93789 0.99357 0.99517 1.18937 0.92707 0.91022 0.85107 0.99440 1.21733 0.92977 1.37800 1.04842 0.92735 1.25572 1.01690 0.94945 0.95654 1.70018 1.36177 1.39110 1.09754 0.85700 0.81367 0.77393 0.77999 1.20242 1.21324 1.19646 1.60702 1.07339 1.33246 1.29180 1.20290 0.91763 0.89506 0.95239 0.92145 1.22063 0.99725 0.97611 0.96778 1.22290 0.97339 0.83372 0.97624 1.86335 1.73108 1.30927 1.49231 1.19536 0.93367 1.05619 0.94260 1.20881 0.92514 0.97616 0.98866 1.20666 1.00075 1.11067 0.90991 1.17843 0.90308 0.93461 0.88442 1.42366 1.08199 1.84255 1.06381 1.20727 0.91850 1.11235 0.99415 1.20730 0.99413 0.95541 0.91733 0.92577 0.94246 0.94890 0.95811 0.92344 0.93070 0.85113 0.91474 0.91011 0.94628 0.93229 0.75920 0.86073 0.84734 0.76584 0.76664 0.85249 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.79 71.98 0.63 -4.63 16 2 C -0.10 -4.94 5.45 30.59 0.17 -4.77 16 3 C 0.23 11.05 1.07 44.17 0.05 11.10 16 4 H -0.01 -0.63 6.45 -2.39 -0.02 -0.64 16 5 C -0.53 -27.99 7.81 25.60 0.20 -27.79 16 6 H 0.05 2.83 7.41 -2.91 -0.02 2.81 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -50.92 11.29 21.45 0.24 -50.68 16 9 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.67 -27.27 4.93 -477.16 -2.35 -29.62 16 14 C 0.14 5.01 1.38 44.17 0.06 5.07 16 15 H 0.06 2.30 6.29 -2.39 -0.01 2.28 16 16 C -0.12 -4.10 4.88 30.59 0.15 -3.95 16 17 C 0.07 2.56 6.26 71.98 0.45 3.01 16 18 O -0.59 -19.28 13.66 -148.98 -2.04 -21.32 16 19 C -0.13 -3.96 4.35 -19.84 -0.09 -4.04 16 20 C -0.08 -2.25 9.66 22.25 0.21 -2.03 16 21 C -0.21 -4.98 9.90 22.40 0.22 -4.76 16 22 C 0.20 4.75 6.75 38.21 0.26 5.01 16 23 N -0.87 -13.39 9.09 -51.37 -0.47 -13.86 16 24 C -0.21 -5.41 9.90 22.40 0.22 -5.19 16 25 C -0.06 -1.67 9.31 22.25 0.21 -1.47 16 26 H 0.06 2.21 6.70 -2.39 -0.02 2.20 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.33 7.97 -2.38 -0.02 1.31 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 3.19 5.94 -2.39 -0.01 3.17 16 31 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.33 13.48 7.25 -89.69 -0.65 12.83 16 33 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 2.06 5.68 -2.39 -0.01 2.05 16 37 H 0.39 9.64 9.12 -74.06 -0.68 8.97 16 38 H 0.12 3.17 8.03 -2.91 -0.02 3.14 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.40 4.59 8.84 -92.70 -0.82 3.77 16 41 H 0.40 4.80 8.84 -92.71 -0.82 3.98 16 42 H 0.13 2.79 8.06 -2.92 -0.02 2.77 16 43 H 0.11 3.55 7.71 -2.91 -0.02 3.53 16 Total: -1.00 -61.03 341.87 -1.31 -62.34 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -1.92 Total: 41.36 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.19 Total: -32.88 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -2.58 Total: -94.16 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -2.04 Total: -21.32 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -61.03 -1.31 -62.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.497 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds