Wall clock time and date at job start Tue Mar 31 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46966 * 305.31126 * 3 2 1 5 5 C 1.50701 * 109.47267 * 185.30884 * 3 2 1 6 6 H 1.07992 * 120.00096 * 240.00162 * 5 3 2 7 7 C 1.37883 * 119.99676 * 60.00038 * 5 3 2 8 8 N 1.31511 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46782 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46879 * 120.00035 * 9 7 5 12 12 H 1.48495 * 109.47059 * 240.00290 * 9 7 5 13 13 N 1.46900 * 109.46716 * 65.31091 * 3 2 1 14 14 C 1.46905 * 110.99873 * 243.46066 * 13 3 2 15 15 H 1.08998 * 109.47055 * 38.74754 * 14 13 3 16 16 C 1.52998 * 109.46912 * 158.74771 * 14 13 3 17 17 C 1.52996 * 109.47409 * 294.17758 * 16 14 13 18 18 O 1.42894 * 109.47421 * 184.66741 * 17 16 14 19 19 C 1.50700 * 109.47041 * 278.75003 * 14 13 3 20 20 C 1.38291 * 119.92588 * 319.72268 * 19 14 13 21 21 C 1.38100 * 120.07423 * 179.72462 * 20 19 14 22 22 C 1.38911 * 119.92363 * 0.55298 * 21 20 19 23 23 N 1.39675 * 120.07293 * 179.74403 * 22 21 20 24 24 C 1.38915 * 119.85050 * 359.72566 * 22 21 20 25 25 C 1.38095 * 119.92483 * 359.97438 * 24 22 21 26 26 H 1.09005 * 109.47350 * 175.80475 * 1 2 3 27 27 H 1.09007 * 109.46732 * 295.80146 * 1 2 3 28 28 H 1.08999 * 109.47020 * 55.79976 * 1 2 3 29 29 H 1.09000 * 109.47421 * 239.99544 * 2 1 3 30 30 H 1.09006 * 109.47568 * 120.00082 * 2 1 3 31 31 H 0.97005 * 119.99944 * 180.02562 * 8 7 5 32 32 H 1.00893 * 111.00524 * 7.41616 * 13 3 2 33 33 H 1.09000 * 109.47181 * 54.18415 * 16 14 13 34 34 H 1.09005 * 109.47034 * 174.17491 * 16 14 13 35 35 H 1.08999 * 109.47542 * 304.67476 * 17 16 14 36 36 H 1.09002 * 109.46789 * 64.67168 * 17 16 14 37 37 H 0.96705 * 114.00322 * 175.00990 * 18 17 16 38 38 H 1.08002 * 119.96350 * 359.97438 * 20 19 14 39 39 H 1.07998 * 120.04152 * 180.27403 * 21 20 19 40 40 H 0.97007 * 119.99742 * 179.97438 * 23 22 21 41 41 H 0.96993 * 120.00280 * 359.97438 * 23 22 21 42 42 H 1.08000 * 120.03239 * 179.97438 * 24 22 21 43 43 H 1.07996 * 119.96180 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 -0.8386 5 6 3.5413 1.4445 -0.1315 6 1 4.1505 1.8876 0.6423 7 6 4.1370 0.8805 -1.2397 8 7 3.3950 0.3414 -2.1822 9 14 5.9978 0.8836 -1.4031 10 1 6.5976 1.5464 -0.2173 11 1 6.4894 -0.5150 -1.4893 12 1 6.3856 1.6213 -2.6321 13 7 1.6578 2.0969 1.2584 14 6 0.7428 3.2194 1.0113 15 1 0.0458 2.9518 0.2173 16 6 -0.0366 3.5329 2.2900 17 6 -0.9519 2.3554 2.6311 18 8 -1.7585 2.6909 3.7619 19 6 1.5358 4.4318 0.5962 20 6 2.7347 4.7196 1.2225 21 6 3.4666 5.8267 0.8406 22 6 2.9917 6.6579 -0.1659 23 7 3.7268 7.7815 -0.5508 24 6 1.7841 6.3691 -0.7889 25 6 1.0603 5.2570 -0.4064 26 1 -0.3634 -1.0249 -0.0752 27 1 -0.3633 0.4473 0.9253 28 1 -0.3633 0.5776 -0.8500 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.8141 -0.0557 -2.9618 32 1 1.2517 1.4343 1.9018 33 1 0.6621 3.6994 3.1099 34 1 -0.6385 4.4289 2.1381 35 1 -1.5947 2.1359 1.7786 36 1 -0.3459 1.4798 2.8641 37 1 -2.4173 2.0201 3.9882 38 1 3.1010 4.0756 2.0083 39 1 4.4050 6.0485 1.3270 40 1 3.3943 8.3610 -1.2541 41 1 4.5698 7.9822 -0.1151 42 1 1.4119 7.0136 -1.5715 43 1 0.1217 5.0316 -0.8906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:35 Heat of formation + Delta-G solvation = -34.727748 kcal Electronic energy + Delta-G solvation = -22501.726401 eV Core-core repulsion = 19353.009334 eV Total energy + Delta-G solvation = -3148.717066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.14901 -37.46830 -36.20800 -34.39535 -32.86891 -31.46325 -30.29252 -29.52259 -28.19115 -26.24121 -24.05955 -22.73537 -22.26551 -21.40774 -19.64392 -19.62891 -17.36546 -16.67852 -16.51096 -16.09974 -15.32176 -15.04314 -14.53268 -14.47874 -13.75754 -13.59571 -13.37487 -13.00419 -12.84363 -12.77395 -12.61397 -12.42390 -11.73217 -11.56871 -11.42123 -11.12124 -11.01718 -10.80604 -10.56407 -10.49760 -10.33740 -10.01417 -9.90948 -9.72886 -9.67170 -9.55744 -9.02202 -8.28059 -8.24145 -7.18917 -6.96175 -5.88432 -3.89438 2.07587 2.21701 3.36268 3.44087 3.49435 4.19239 4.28456 4.51019 4.57199 5.13453 5.26554 5.37111 5.42100 5.48294 5.55035 5.58873 5.80162 5.94738 6.01183 6.08253 6.09841 6.13373 6.17710 6.34669 6.38005 6.40209 6.56450 6.71267 6.78664 6.85848 6.98366 7.06856 7.20982 7.35530 7.45969 7.55785 7.68277 7.80229 7.91233 8.01502 8.04841 8.38501 8.58899 8.73627 9.17727 9.74472 11.17625 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.008523 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.170105 B = 3284.534366 C = 5475.036527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C 0.221 3.779 4 H 0.024 0.976 5 C -0.476 4.476 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.678 5.678 14 C 0.140 3.860 15 H 0.039 0.961 16 C -0.115 4.115 17 C 0.072 3.928 18 O -0.576 6.576 19 C -0.108 4.108 20 C -0.021 4.021 21 C -0.203 4.203 22 C 0.203 3.797 23 N -0.886 5.886 24 C -0.205 4.205 25 C -0.071 4.071 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.256 0.744 32 H 0.321 0.679 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.375 0.625 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.392 0.608 41 H 0.393 0.607 42 H 0.109 0.891 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 8.327 5.669 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.114 3.886 4 H 0.041 0.959 5 C -0.515 4.515 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.310 5.310 14 C 0.029 3.971 15 H 0.057 0.943 16 C -0.153 4.153 17 C -0.005 4.005 18 O -0.381 6.381 19 C -0.111 4.111 20 C -0.039 4.039 21 C -0.226 4.226 22 C 0.100 3.900 23 N -0.426 5.426 24 C -0.227 4.227 25 C -0.091 4.091 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.221 0.779 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.219 0.781 41 H 0.220 0.780 42 H 0.127 0.873 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.506 9.116 5.520 11.995 hybrid contribution 0.147 -0.841 -0.807 1.175 sum -5.359 8.275 4.712 10.927 Atomic orbital electron populations 1.21934 0.99722 0.99552 0.99594 1.22136 0.91256 1.01792 1.03092 1.19211 0.95506 0.88697 0.85197 0.95857 1.21261 0.91216 1.34843 1.04227 0.91959 1.24933 0.97725 0.96010 0.96038 1.69871 1.34371 1.40148 1.09692 0.86557 0.86410 0.77303 0.77835 1.19823 1.21412 1.21433 1.60815 1.42094 1.11703 1.16386 1.20212 0.91459 0.91264 0.94142 0.94315 1.21693 0.97573 0.97415 0.98579 1.22369 0.92784 0.98005 0.87378 1.86469 1.52369 1.49155 1.50145 1.19442 0.96949 0.96515 0.98184 1.20717 0.92390 0.93175 0.97667 1.20550 1.01857 0.98528 1.01643 1.17728 0.91197 0.87512 0.93537 1.42370 1.26174 1.28935 1.45148 1.20324 0.96467 1.01381 1.04562 1.20669 0.98711 0.93789 0.95887 0.94577 0.94860 0.93807 0.88109 0.94484 0.93384 0.85996 0.90554 0.91302 0.93880 0.93204 0.77929 0.85364 0.87116 0.78116 0.77985 0.87266 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.73 37.15 0.36 -2.44 16 2 C -0.14 -3.26 5.06 -26.73 -0.14 -3.40 16 3 C 0.22 5.30 1.92 -68.86 -0.13 5.17 16 4 H 0.02 0.64 7.31 -51.93 -0.38 0.26 16 5 C -0.48 -12.94 8.84 -34.44 -0.30 -13.24 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.68 -13.53 5.22 -102.17 -0.53 -14.06 16 14 C 0.14 2.48 2.03 -68.86 -0.14 2.34 16 15 H 0.04 0.72 7.52 -51.93 -0.39 0.33 16 16 C -0.11 -1.75 5.16 -26.73 -0.14 -1.89 16 17 C 0.07 0.98 5.91 37.16 0.22 1.20 16 18 O -0.58 -7.44 13.66 -35.23 -0.48 -7.92 16 19 C -0.11 -2.01 4.71 -104.59 -0.49 -2.50 16 20 C -0.02 -0.38 9.31 -39.61 -0.37 -0.75 16 21 C -0.20 -3.48 9.90 -39.38 -0.39 -3.87 16 22 C 0.20 3.23 6.75 -83.78 -0.57 2.66 16 23 N -0.89 -10.64 9.09 32.41 0.29 -10.35 16 24 C -0.20 -3.32 9.90 -39.38 -0.39 -3.71 16 25 C -0.07 -1.24 9.66 -39.62 -0.38 -1.62 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.54 5.53 -51.93 -0.29 0.25 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.32 5.97 5.18 -39.30 -0.20 5.77 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.05 0.68 6.15 -51.93 -0.32 0.36 16 37 H 0.37 3.03 9.12 45.56 0.42 3.45 16 38 H 0.13 2.44 7.72 -52.49 -0.41 2.04 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.39 3.88 8.84 -40.82 -0.36 3.52 16 41 H 0.39 4.02 8.84 -40.82 -0.36 3.65 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.74 8.03 -52.49 -0.42 1.32 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -30.62 345.26 -8.80 -39.42 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -5.93 Total: 16.60 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.95 Total: -20.69 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.39 Total: -49.46 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.48 Total: -7.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.62 -8.80 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.692 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds