Wall clock time and date at job start Tue Mar 31 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 H 1.08995 * 109.47234 * 305.56456 * 3 2 1 5 5 C 1.50705 * 109.47026 * 185.55923 * 3 2 1 6 6 H 1.07993 * 120.00216 * 245.45383 * 5 3 2 7 7 C 1.37882 * 119.99476 * 65.45827 * 5 3 2 8 8 N 1.31509 * 120.00155 * 9.49042 * 7 5 3 9 9 Si 1.86796 * 119.99473 * 189.48616 * 7 5 3 10 10 H 1.48504 * 109.47217 * 84.99536 * 9 7 5 11 11 H 1.48505 * 109.47285 * 204.99369 * 9 7 5 12 12 H 1.48499 * 109.47528 * 324.99568 * 9 7 5 13 13 N 1.46503 * 109.46924 * 65.56422 * 3 2 1 14 14 C 1.39670 * 120.00022 * 275.00352 * 13 3 2 15 15 C 1.38908 * 120.07596 * 180.02562 * 14 13 3 16 16 C 1.38104 * 119.92456 * 180.02562 * 15 14 13 17 17 C 1.38284 * 120.07518 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.92175 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.47506 * 359.97438 * 18 17 16 20 20 C 1.52999 * 109.46817 * 239.99423 * 18 17 16 21 21 N 1.46899 * 109.47149 * 174.99971 * 20 18 17 22 22 C 1.53002 * 109.47128 * 120.00322 * 18 17 16 23 23 O 1.42902 * 109.47213 * 184.99967 * 22 18 17 24 24 C 1.38282 * 120.15092 * 0.27135 * 17 16 15 25 25 C 1.38105 * 120.07219 * 359.45909 * 24 17 16 26 26 H 1.08999 * 109.46732 * 299.99592 * 1 2 3 27 27 H 1.08996 * 109.47414 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47175 * 240.00706 * 2 1 3 30 30 H 1.09003 * 109.47608 * 120.00472 * 2 1 3 31 31 H 0.97005 * 120.00242 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99950 * 94.99468 * 13 3 2 33 33 H 1.07999 * 120.03817 * 359.97438 * 15 14 13 34 34 H 1.08001 * 119.96418 * 179.97438 * 16 15 14 35 35 H 1.08997 * 109.47711 * 295.00572 * 20 18 17 36 36 H 1.09007 * 109.46719 * 55.00468 * 20 18 17 37 37 H 1.00897 * 111.00313 * 180.02562 * 21 20 18 38 38 H 1.00902 * 111.00277 * 303.96125 * 21 20 18 39 39 H 1.09004 * 109.46500 * 304.99267 * 22 18 17 40 40 H 1.08990 * 109.47624 * 64.99391 * 22 18 17 41 41 H 0.96692 * 113.99949 * 179.97438 * 23 22 18 42 42 H 1.08000 * 119.95995 * 179.70378 * 24 17 16 43 43 H 1.07996 * 120.03600 * 180.27401 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5407 1.4447 -0.1376 6 1 4.1568 1.8064 0.6723 7 6 4.1272 0.9851 -1.2978 8 7 3.3842 0.7211 -2.3503 9 14 5.9771 0.7375 -1.3744 10 1 6.3196 -0.6042 -0.8380 11 1 6.4320 0.8378 -2.7845 12 1 6.6505 1.7821 -0.5616 13 7 1.6640 2.0934 1.2575 14 6 0.4037 2.6803 1.3905 15 6 0.0458 3.2983 2.5820 16 6 -1.2015 3.8773 2.7102 17 6 -2.0934 3.8427 1.6541 18 6 -3.4534 4.4761 1.7977 19 1 -3.5504 4.9066 2.7943 20 6 -4.5349 3.4133 1.5942 21 7 -5.8555 4.0029 1.8516 22 6 -3.6166 5.5771 0.7478 23 8 -4.8569 6.2551 0.9575 24 6 -1.7423 3.2239 0.4684 25 6 -0.4946 2.6479 0.3314 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7968 0.3973 -3.1664 32 1 2.2904 2.1165 1.9979 33 1 0.7418 3.3253 3.4074 34 1 -1.4806 4.3576 3.6365 35 1 -4.4948 3.0455 0.5689 36 1 -4.3657 2.5861 2.2837 37 1 -6.5875 3.3203 1.7242 38 1 -5.8967 4.4088 2.7745 39 1 -2.7947 6.2877 0.8359 40 1 -3.6085 5.1339 -0.2478 41 1 -5.0270 6.9680 0.3267 42 1 -2.4431 3.1946 -0.3529 43 1 -0.2194 2.1686 -0.5964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:20 Heat of formation + Delta-G solvation = -30.532909 kcal Electronic energy + Delta-G solvation = -21854.531983 eV Core-core repulsion = 18705.996819 eV Total energy + Delta-G solvation = -3148.535164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.43887 -37.52741 -35.89125 -34.57330 -32.83597 -31.62084 -30.68894 -30.07772 -27.80964 -25.81009 -24.57587 -23.02098 -22.72609 -21.69612 -19.86193 -19.34435 -17.53132 -17.05909 -16.01687 -15.60115 -15.51641 -15.02277 -14.82343 -14.39833 -14.10425 -13.82649 -13.45960 -13.30445 -13.05579 -12.74745 -12.62820 -12.46202 -11.96790 -11.65282 -11.46446 -11.24548 -11.11150 -10.95278 -10.81940 -10.71659 -10.47437 -10.25431 -10.18836 -9.70653 -9.69821 -9.29263 -8.99038 -8.49508 -8.45749 -8.33700 -6.48821 -6.21998 -4.26617 1.98786 2.14012 3.20759 3.27882 3.29629 4.23061 4.30789 4.41326 4.57002 4.78312 4.95495 5.11080 5.32468 5.35932 5.46357 5.52582 5.61290 5.71309 5.75256 5.90225 6.02025 6.05317 6.15285 6.20978 6.28539 6.41563 6.44604 6.54868 6.86252 6.88124 6.92108 7.04147 7.13356 7.16810 7.23158 7.33206 7.51040 7.54569 7.63051 7.70325 7.84494 8.00145 8.32705 8.69128 8.87845 9.39153 10.85650 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003583 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.042135 B = 7812.649972 C = 7890.310629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.723 5.723 14 C 0.239 3.761 15 C -0.220 4.220 16 C -0.064 4.064 17 C -0.170 4.170 18 C -0.027 4.027 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.832 5.832 22 C 0.093 3.907 23 O -0.551 6.551 24 C -0.067 4.067 25 C -0.198 4.198 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.331 0.669 38 H 0.336 0.664 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.365 0.635 42 H 0.110 0.890 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 5.375 6.634 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.130 3.870 15 C -0.244 4.244 16 C -0.083 4.083 17 C -0.174 4.174 18 C -0.046 4.046 19 H 0.090 0.910 20 C -0.057 4.057 21 N -0.361 5.361 22 C 0.015 3.985 23 O -0.354 6.354 24 C -0.086 4.086 25 C -0.221 4.221 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.209 0.791 42 H 0.128 0.872 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.486 5.227 6.093 14.844 hybrid contribution 1.409 -0.611 0.443 1.599 sum -11.077 4.616 6.536 13.664 Atomic orbital electron populations 1.22209 0.98641 0.99260 1.00873 1.21942 0.92611 1.00450 1.01390 1.18755 0.94771 0.88542 0.81139 0.93481 1.21168 0.90750 1.43837 1.01530 0.92166 1.24866 0.98488 0.95064 0.95008 1.69948 1.35722 1.44135 1.02157 0.86533 0.84998 0.78758 0.77277 1.20425 1.21124 1.19912 1.45569 1.12058 1.58957 1.17866 1.18048 0.86423 0.89662 0.92895 1.20471 0.98332 1.08060 0.97501 1.20538 0.92887 0.97664 0.97188 1.19050 0.95594 1.07033 0.95693 1.19844 0.91526 0.94069 0.99198 0.90968 1.21795 0.88602 0.94611 1.00647 1.58601 1.03835 1.38053 1.35587 1.22080 0.85381 0.93548 0.97479 1.86645 1.39199 1.51563 1.57998 1.20615 0.95622 0.96112 0.96235 1.21077 0.94368 1.06767 0.99858 0.92927 0.93232 0.95209 0.90260 0.94441 0.92531 0.77816 0.87085 0.87386 0.91326 0.95878 0.85790 0.85152 0.94442 0.94130 0.79060 0.87217 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.23 37.16 0.31 -2.66 16 2 C -0.12 -2.79 5.50 -26.73 -0.15 -2.94 16 3 C 0.27 6.35 2.06 -69.08 -0.14 6.21 16 4 H 0.05 1.23 6.43 -51.93 -0.33 0.90 16 5 C -0.53 -13.81 8.66 -34.44 -0.30 -14.11 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 8 N -0.88 -23.96 12.16 55.43 0.67 -23.29 16 9 Si 0.90 20.35 29.55 -169.99 -5.02 15.33 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.72 -14.64 5.18 -53.29 -0.28 -14.92 16 14 C 0.24 4.45 5.51 -83.79 -0.46 3.99 16 15 C -0.22 -3.60 9.90 -39.38 -0.39 -3.99 16 16 C -0.06 -0.95 9.66 -39.61 -0.38 -1.33 16 17 C -0.17 -2.47 4.79 -104.59 -0.50 -2.97 16 18 C -0.03 -0.34 2.50 -91.77 -0.23 -0.57 16 19 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 20 C 0.07 0.88 5.91 -3.83 -0.02 0.86 16 21 N -0.83 -8.86 7.95 -10.37 -0.08 -8.94 16 22 C 0.09 1.13 6.17 37.16 0.23 1.35 16 23 O -0.55 -6.33 11.98 -35.23 -0.42 -6.75 16 24 C -0.07 -1.05 8.80 -39.61 -0.35 -1.40 16 25 C -0.20 -3.60 6.72 -39.38 -0.26 -3.87 16 26 H 0.05 1.00 5.37 -51.93 -0.28 0.72 16 27 H 0.05 0.95 6.39 -51.93 -0.33 0.62 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.97 6.79 -51.93 -0.35 1.61 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.39 7.41 8.54 -40.82 -0.35 7.06 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.11 1.36 7.94 -52.49 -0.42 0.94 16 35 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.33 2.97 9.08 -39.29 -0.36 2.61 16 38 H 0.34 3.37 8.99 -39.29 -0.35 3.02 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.49 7.58 -51.93 -0.39 0.10 16 41 H 0.36 2.79 9.12 45.56 0.42 3.20 16 42 H 0.11 1.55 7.21 -52.49 -0.38 1.17 16 43 H 0.13 2.64 4.00 -52.49 -0.21 2.43 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -27.67 337.21 -8.59 -36.26 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -5.79 Total: 16.92 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.74 Total: -19.69 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.32 Total: -47.15 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.42 Total: -6.75 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.67 -8.59 -36.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.728 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds