Wall clock time and date at job start Tue Mar 31 2020 00:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 H 1.08995 * 109.47234 * 305.56456 * 3 2 1 5 5 C 1.50705 * 109.47026 * 185.55923 * 3 2 1 6 6 H 1.07993 * 120.00216 * 245.45383 * 5 3 2 7 7 C 1.37882 * 119.99476 * 65.45827 * 5 3 2 8 8 N 1.31509 * 120.00155 * 9.49042 * 7 5 3 9 9 Si 1.86796 * 119.99473 * 189.48616 * 7 5 3 10 10 H 1.48504 * 109.47217 * 84.99536 * 9 7 5 11 11 H 1.48505 * 109.47285 * 204.99369 * 9 7 5 12 12 H 1.48499 * 109.47528 * 324.99568 * 9 7 5 13 13 N 1.46503 * 109.46924 * 65.56422 * 3 2 1 14 14 C 1.39670 * 120.00022 * 275.00352 * 13 3 2 15 15 C 1.38908 * 120.07596 * 180.02562 * 14 13 3 16 16 C 1.38104 * 119.92456 * 180.02562 * 15 14 13 17 17 C 1.38284 * 120.07518 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.92175 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.47506 * 359.97438 * 18 17 16 20 20 C 1.52999 * 109.46817 * 239.99423 * 18 17 16 21 21 N 1.46899 * 109.47149 * 174.99971 * 20 18 17 22 22 C 1.53002 * 109.47128 * 120.00322 * 18 17 16 23 23 O 1.42902 * 109.47213 * 184.99967 * 22 18 17 24 24 C 1.38282 * 120.15092 * 0.27135 * 17 16 15 25 25 C 1.38105 * 120.07219 * 359.45909 * 24 17 16 26 26 H 1.08999 * 109.46732 * 299.99592 * 1 2 3 27 27 H 1.08996 * 109.47414 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47175 * 240.00706 * 2 1 3 30 30 H 1.09003 * 109.47608 * 120.00472 * 2 1 3 31 31 H 0.97005 * 120.00242 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99950 * 94.99468 * 13 3 2 33 33 H 1.07999 * 120.03817 * 359.97438 * 15 14 13 34 34 H 1.08001 * 119.96418 * 179.97438 * 16 15 14 35 35 H 1.08997 * 109.47711 * 295.00572 * 20 18 17 36 36 H 1.09007 * 109.46719 * 55.00468 * 20 18 17 37 37 H 1.00897 * 111.00313 * 180.02562 * 21 20 18 38 38 H 1.00902 * 111.00277 * 303.96125 * 21 20 18 39 39 H 1.09004 * 109.46500 * 304.99267 * 22 18 17 40 40 H 1.08990 * 109.47624 * 64.99391 * 22 18 17 41 41 H 0.96692 * 113.99949 * 179.97438 * 23 22 18 42 42 H 1.08000 * 119.95995 * 179.70378 * 24 17 16 43 43 H 1.07996 * 120.03600 * 180.27401 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5407 1.4447 -0.1376 6 1 4.1568 1.8064 0.6723 7 6 4.1272 0.9851 -1.2978 8 7 3.3842 0.7211 -2.3503 9 14 5.9771 0.7375 -1.3744 10 1 6.3196 -0.6042 -0.8380 11 1 6.4320 0.8378 -2.7845 12 1 6.6505 1.7821 -0.5616 13 7 1.6640 2.0934 1.2575 14 6 0.4037 2.6803 1.3905 15 6 0.0458 3.2983 2.5820 16 6 -1.2015 3.8773 2.7102 17 6 -2.0934 3.8427 1.6541 18 6 -3.4534 4.4761 1.7977 19 1 -3.5504 4.9066 2.7943 20 6 -4.5349 3.4133 1.5942 21 7 -5.8555 4.0029 1.8516 22 6 -3.6166 5.5771 0.7478 23 8 -4.8569 6.2551 0.9575 24 6 -1.7423 3.2239 0.4684 25 6 -0.4946 2.6479 0.3314 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7968 0.3973 -3.1664 32 1 2.2904 2.1165 1.9979 33 1 0.7418 3.3253 3.4074 34 1 -1.4806 4.3576 3.6365 35 1 -4.4948 3.0455 0.5689 36 1 -4.3657 2.5861 2.2837 37 1 -6.5875 3.3203 1.7242 38 1 -5.8967 4.4088 2.7745 39 1 -2.7947 6.2877 0.8359 40 1 -3.6085 5.1339 -0.2478 41 1 -5.0270 6.9680 0.3267 42 1 -2.4431 3.1946 -0.3529 43 1 -0.2194 2.1686 -0.5964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:19 Heat of formation + Delta-G solvation = -50.060866 kcal Electronic energy + Delta-G solvation = -21855.378779 eV Core-core repulsion = 18705.996819 eV Total energy + Delta-G solvation = -3149.381960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73744 -38.72323 -37.23342 -35.63283 -34.48298 -33.21102 -31.94332 -31.42339 -29.34494 -27.34711 -25.54322 -24.78368 -24.04264 -23.04472 -21.17664 -20.77422 -19.07358 -18.22193 -17.53492 -17.08804 -16.59067 -16.34721 -15.96553 -15.83866 -15.39963 -15.24923 -14.73919 -14.66461 -14.33467 -14.03745 -13.94096 -13.60737 -13.53644 -13.28439 -13.12959 -12.88149 -12.65170 -12.31131 -12.22469 -12.01974 -11.92375 -11.89315 -11.61974 -11.29883 -11.06599 -10.66276 -10.60433 -10.37243 -9.63416 -9.30234 -8.23884 -7.92949 -6.32201 0.69406 0.84682 1.40510 1.41958 1.50575 2.36777 2.99668 3.06328 3.10884 3.46497 3.85038 3.98875 4.19395 4.25556 4.37708 4.42574 4.49904 4.54851 4.59793 4.67595 4.69850 4.74236 4.77215 4.89826 4.98683 5.07858 5.09317 5.23575 5.26219 5.31051 5.37514 5.51323 5.62496 5.67988 5.72480 5.80555 5.93433 6.08021 6.23858 6.40430 6.58766 6.77934 6.89783 7.13378 7.25353 7.39258 8.85903 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003583 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.042135 B = 7812.649972 C = 7890.310629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.282 3.718 4 H 0.013 0.987 5 C -0.551 4.551 6 H 0.059 0.941 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.731 5.731 14 C 0.214 3.786 15 C -0.217 4.217 16 C -0.063 4.063 17 C -0.156 4.156 18 C -0.025 4.025 19 H 0.079 0.921 20 C 0.079 3.921 21 N -0.834 5.834 22 C 0.097 3.903 23 O -0.560 6.560 24 C -0.067 4.067 25 C -0.214 4.214 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.393 0.607 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.341 0.659 38 H 0.342 0.658 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.382 0.618 42 H 0.123 0.877 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.873 6.219 8.105 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.178 3.822 4 H 0.031 0.969 5 C -0.590 4.590 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.355 5.355 14 C 0.107 3.893 15 C -0.240 4.240 16 C -0.082 4.082 17 C -0.159 4.159 18 C -0.044 4.044 19 H 0.097 0.903 20 C -0.052 4.052 21 N -0.364 5.364 22 C 0.019 3.981 23 O -0.365 6.365 24 C -0.086 4.086 25 C -0.237 4.237 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.144 0.856 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.229 0.771 42 H 0.141 0.859 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.668 6.100 7.582 16.778 hybrid contribution 1.609 -0.760 0.018 1.780 sum -12.059 5.339 7.600 15.221 Atomic orbital electron populations 1.22049 0.96314 1.00248 1.00927 1.21774 0.94649 0.99463 0.99727 1.18346 0.93370 0.88815 0.81648 0.96897 1.21540 0.92246 1.43626 1.01542 0.92270 1.25625 1.02564 0.94876 0.94734 1.70063 1.37338 1.44944 1.02575 0.85566 0.80091 0.78773 0.77178 1.19874 1.20980 1.19430 1.45235 1.13170 1.60305 1.16808 1.18252 0.85903 0.91021 0.94121 1.20696 0.99268 1.07111 0.96924 1.20893 0.92046 0.96901 0.98365 1.19310 0.96423 1.05309 0.94845 1.19828 0.90367 0.94356 0.99808 0.90270 1.21680 0.89085 0.94253 1.00206 1.58556 1.03488 1.38368 1.36009 1.21962 0.85742 0.93407 0.97031 1.86590 1.38675 1.52332 1.58919 1.20757 0.94826 0.95669 0.97319 1.21000 0.95611 1.07956 0.99116 0.92408 0.93659 0.93592 0.93181 0.94576 0.92577 0.77376 0.85578 0.84426 0.92012 0.96103 0.84660 0.84577 0.94580 0.94426 0.77053 0.85903 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.23 71.98 0.59 -4.84 16 2 C -0.12 -5.39 5.50 30.59 0.17 -5.22 16 3 C 0.28 13.75 2.06 44.25 0.09 13.84 16 4 H 0.01 0.73 6.43 -2.39 -0.02 0.71 16 5 C -0.55 -29.19 8.66 25.60 0.22 -28.97 16 6 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 7 C 0.02 1.22 5.15 84.66 0.44 1.65 16 8 N -0.91 -50.98 12.16 21.45 0.26 -50.72 16 9 Si 0.96 42.21 29.55 68.60 2.03 44.24 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.73 -30.17 5.18 -322.50 -1.67 -31.84 16 14 C 0.21 7.94 5.51 38.21 0.21 8.15 16 15 C -0.22 -6.73 9.90 22.40 0.22 -6.51 16 16 C -0.06 -1.70 9.66 22.25 0.21 -1.48 16 17 C -0.16 -4.16 4.79 -19.84 -0.09 -4.26 16 18 C -0.02 -0.55 2.50 -11.54 -0.03 -0.58 16 19 H 0.08 1.71 7.87 -2.39 -0.02 1.69 16 20 C 0.08 1.68 5.91 86.30 0.51 2.19 16 21 N -0.83 -15.61 7.95 -186.72 -1.48 -17.09 16 22 C 0.10 2.10 6.17 71.98 0.44 2.55 16 23 O -0.56 -11.32 11.98 -148.98 -1.78 -13.11 16 24 C -0.07 -2.03 8.80 22.25 0.20 -1.84 16 25 C -0.21 -7.87 6.72 22.40 0.15 -7.72 16 26 H 0.06 2.20 5.37 -2.39 -0.01 2.19 16 27 H 0.04 1.79 6.39 -2.39 -0.02 1.78 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 2.58 6.79 -2.39 -0.02 2.56 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.39 15.15 8.54 -92.70 -0.79 14.36 16 33 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.14 2.90 7.94 -2.91 -0.02 2.88 16 35 H 0.06 1.41 7.55 -2.39 -0.02 1.39 16 36 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.34 5.29 9.08 -89.70 -0.81 4.48 16 38 H 0.34 5.88 8.99 -89.69 -0.81 5.08 16 39 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.04 0.84 7.58 -2.39 -0.02 0.82 16 41 H 0.38 4.84 9.12 -74.06 -0.68 4.16 16 42 H 0.12 3.34 7.21 -2.91 -0.02 3.32 16 43 H 0.11 4.57 4.00 -2.91 -0.01 4.55 16 Total: -1.00 -59.52 337.21 -1.35 -60.87 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -2.03 Total: 40.68 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 3.33 Total: -33.04 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -2.89 Total: -99.65 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.78 Total: -13.11 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -59.52 -1.35 -60.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.812 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds