Wall clock time and date at job start Tue Mar 31 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.09001 * 109.47506 * 305.00271 * 3 2 1 5 5 C 1.50700 * 109.47296 * 184.99727 * 3 2 1 6 6 H 1.07998 * 120.00600 * 240.00194 * 5 3 2 7 7 C 1.37882 * 119.99725 * 60.00116 * 5 3 2 8 8 N 1.31507 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46962 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46914 * 119.99902 * 9 7 5 12 12 H 1.48498 * 109.47373 * 240.00077 * 9 7 5 13 13 N 1.46507 * 109.47178 * 65.00037 * 3 2 1 14 14 C 1.39672 * 119.99644 * 275.00013 * 13 3 2 15 15 C 1.38918 * 120.07035 * 179.97438 * 14 13 3 16 16 C 1.38103 * 119.92232 * 180.26003 * 15 14 13 17 17 C 1.38291 * 120.07426 * 359.43747 * 16 15 14 18 18 C 1.50698 * 119.92195 * 180.27995 * 17 16 15 19 19 H 1.09011 * 109.46454 * 180.27747 * 18 17 16 20 20 C 1.52995 * 109.47276 * 300.27843 * 18 17 16 21 21 N 1.46901 * 109.46640 * 185.00054 * 20 18 17 22 22 C 1.53002 * 109.46811 * 60.28500 * 18 17 16 23 23 O 1.42895 * 109.47536 * 64.99579 * 22 18 17 24 24 C 1.38281 * 120.14889 * 0.56232 * 17 16 15 25 25 C 1.38103 * 120.07737 * 359.72142 * 24 17 16 26 26 H 1.08995 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47259 * 299.99902 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.00070 * 1 2 3 29 29 H 1.09004 * 109.47259 * 240.00098 * 2 1 3 30 30 H 1.09003 * 109.47101 * 119.99930 * 2 1 3 31 31 H 0.96997 * 120.00170 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99787 * 94.99683 * 13 3 2 33 33 H 1.08002 * 120.03585 * 359.97438 * 15 14 13 34 34 H 1.08004 * 119.95970 * 179.72372 * 16 15 14 35 35 H 1.08997 * 109.47419 * 304.99817 * 20 18 17 36 36 H 1.09000 * 109.46710 * 65.00593 * 20 18 17 37 37 H 1.00902 * 110.99670 * 180.02562 * 21 20 18 38 38 H 1.00901 * 111.00260 * 303.95260 * 21 20 18 39 39 H 1.09002 * 109.46291 * 184.99467 * 22 18 17 40 40 H 1.09001 * 109.46908 * 304.98834 * 22 18 17 41 41 H 0.96696 * 114.00191 * 179.97438 * 23 22 18 42 42 H 1.07998 * 119.96595 * 179.74375 * 24 17 16 43 43 H 1.08001 * 120.04036 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5987 1.5461 -0.1941 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6166 -2.6101 13 7 1.6524 2.0975 1.2519 14 6 0.3909 2.6850 1.3711 15 6 0.0217 3.3060 2.5576 16 6 -1.2285 3.8813 2.6740 17 6 -2.1079 3.8497 1.6072 18 6 -3.4688 4.4840 1.7359 19 1 -4.0186 4.3566 0.8033 20 6 -4.2376 3.8148 2.8768 21 7 -5.6051 4.3493 2.9254 22 6 -3.3097 5.9762 2.0343 23 8 -2.6954 6.6225 0.9177 24 6 -1.7435 3.2324 0.4248 25 6 -0.4971 2.6500 0.3035 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0610 -2.9498 32 1 2.2720 2.1230 1.9978 33 1 0.7097 3.3349 3.3896 34 1 -1.5178 4.3604 3.5977 35 1 -4.2740 2.7385 2.7083 36 1 -3.7344 4.0178 3.8222 37 1 -6.1336 3.9229 3.6717 38 1 -5.5976 5.3542 3.0164 39 1 -4.2902 6.4170 2.2150 40 1 -2.6848 6.1054 2.9180 41 1 -2.5636 7.5730 1.0370 42 1 -2.4342 3.2059 -0.4051 43 1 -0.2133 2.1676 -0.6202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:26 Heat of formation + Delta-G solvation = -30.724484 kcal Electronic energy + Delta-G solvation = -21903.575317 eV Core-core repulsion = 18755.031845 eV Total energy + Delta-G solvation = -3148.543472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.40069 -37.62929 -35.86140 -34.99202 -32.82945 -31.45658 -30.69592 -29.86130 -27.84708 -25.88617 -24.85657 -23.09164 -22.47198 -21.54991 -20.15921 -18.91100 -17.57256 -17.20212 -16.50471 -15.74323 -15.53819 -15.05229 -14.60324 -14.38556 -14.24686 -13.85818 -13.65430 -13.21280 -13.12709 -12.79074 -12.45824 -12.38931 -12.00106 -11.67343 -11.40079 -11.27921 -11.21089 -10.93847 -10.81075 -10.64281 -10.40513 -10.15170 -10.08371 -9.92224 -9.62047 -9.16607 -8.90773 -8.87523 -8.43693 -8.22092 -6.37281 -6.15119 -4.23277 2.09750 2.27508 3.22190 3.30451 3.33647 4.21059 4.27084 4.36807 4.51931 4.64823 4.94542 5.03604 5.16434 5.24576 5.38877 5.48356 5.50821 5.56722 5.74359 5.92620 6.00135 6.08532 6.25390 6.29396 6.40070 6.50603 6.56267 6.64874 6.89590 6.94896 7.00190 7.03118 7.14212 7.19553 7.25963 7.29864 7.46962 7.61012 7.66153 7.72527 7.86761 8.11469 8.41687 8.75261 8.94766 9.43745 10.90060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.003733 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.206105 B = 7497.881842 C = 7771.086299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.273 3.727 4 H 0.040 0.960 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.725 5.725 14 C 0.237 3.763 15 C -0.220 4.220 16 C -0.070 4.070 17 C -0.156 4.156 18 C -0.033 4.033 19 H 0.086 0.914 20 C 0.072 3.928 21 N -0.853 5.853 22 C 0.085 3.915 23 O -0.561 6.561 24 C -0.061 4.061 25 C -0.198 4.198 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.340 0.660 38 H 0.336 0.664 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.109 0.891 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 7.983 9.676 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.170 3.830 4 H 0.058 0.942 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.128 3.872 15 C -0.244 4.244 16 C -0.089 4.089 17 C -0.159 4.159 18 C -0.052 4.052 19 H 0.104 0.896 20 C -0.059 4.059 21 N -0.384 5.384 22 C 0.006 3.994 23 O -0.365 6.365 24 C -0.080 4.080 25 C -0.220 4.220 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.218 0.782 42 H 0.127 0.873 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.076 6.836 8.310 16.934 hybrid contribution 1.561 0.842 1.399 2.259 sum -11.515 7.677 9.709 16.905 Atomic orbital electron populations 1.22201 0.98932 0.99059 1.00659 1.22018 0.92266 1.00393 1.02445 1.18730 0.94411 0.88736 0.81136 0.94232 1.21271 0.90910 1.38492 1.06121 0.92152 1.24877 0.98615 0.94809 0.95406 1.69875 1.35034 1.37945 1.09404 0.86411 0.84947 0.77757 0.78117 1.19791 1.20888 1.20855 1.45542 1.12246 1.59129 1.17804 1.18011 0.86397 0.89837 0.92953 1.20421 0.98206 1.08277 0.97490 1.20386 0.93165 0.98250 0.97058 1.18999 0.95617 1.05978 0.95282 1.19917 0.93790 0.91843 0.99620 0.89591 1.21829 0.87447 1.00139 0.96456 1.58797 1.15040 1.10430 1.54104 1.22250 0.95076 0.93409 0.88622 1.86595 1.83479 1.25215 1.41214 1.20644 0.95595 0.95622 0.96127 1.21050 0.94551 1.06742 0.99688 0.95345 0.93193 0.93388 0.88344 0.94818 0.92639 0.77924 0.87355 0.87967 0.90130 0.95365 0.84770 0.85077 0.94345 0.94125 0.78154 0.87259 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.22 37.16 0.31 -2.79 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.62 2.20 -69.08 -0.15 6.47 16 4 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.73 -15.29 5.18 -53.29 -0.28 -15.57 16 14 C 0.24 4.64 5.48 -83.78 -0.46 4.18 16 15 C -0.22 -3.78 9.90 -39.38 -0.39 -4.16 16 16 C -0.07 -1.07 8.69 -39.61 -0.34 -1.41 16 17 C -0.16 -2.39 4.55 -104.59 -0.48 -2.87 16 18 C -0.03 -0.41 2.48 -91.77 -0.23 -0.64 16 19 H 0.09 1.19 7.87 -51.92 -0.41 0.78 16 20 C 0.07 0.75 5.98 -3.83 -0.02 0.73 16 21 N -0.85 -7.49 9.62 -10.37 -0.10 -7.59 16 22 C 0.08 0.92 6.20 37.16 0.23 1.15 16 23 O -0.56 -7.04 13.41 -35.23 -0.47 -7.51 16 24 C -0.06 -1.05 9.66 -39.61 -0.38 -1.43 16 25 C -0.20 -3.84 6.72 -39.38 -0.26 -4.10 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 28 H 0.05 0.97 6.35 -51.93 -0.33 0.64 16 29 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.39 7.70 8.55 -40.82 -0.35 7.35 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.31 7.12 -52.48 -0.37 0.94 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.28 7.55 -51.93 -0.39 -0.11 16 37 H 0.34 2.35 9.08 -39.29 -0.36 2.00 16 38 H 0.34 2.50 7.15 -39.29 -0.28 2.22 16 39 H 0.04 0.33 6.47 -51.93 -0.34 0.00 16 40 H 0.04 0.42 7.24 -51.93 -0.38 0.04 16 41 H 0.37 2.88 9.12 45.56 0.42 3.30 16 42 H 0.11 1.74 7.94 -52.49 -0.42 1.32 16 43 H 0.13 2.76 4.01 -52.49 -0.21 2.55 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -29.16 334.72 -8.50 -37.66 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -5.57 Total: 16.70 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.72 Total: -20.75 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.25 Total: -46.80 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.47 Total: -7.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.16 -8.50 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.933 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds