Wall clock time and date at job start Tue Mar 31 2020 00:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.09001 * 109.47506 * 305.00271 * 3 2 1 5 5 C 1.50700 * 109.47296 * 184.99727 * 3 2 1 6 6 H 1.07998 * 120.00600 * 240.00194 * 5 3 2 7 7 C 1.37882 * 119.99725 * 60.00116 * 5 3 2 8 8 N 1.31507 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46962 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46914 * 119.99902 * 9 7 5 12 12 H 1.48498 * 109.47373 * 240.00077 * 9 7 5 13 13 N 1.46507 * 109.47178 * 65.00037 * 3 2 1 14 14 C 1.39672 * 119.99644 * 275.00013 * 13 3 2 15 15 C 1.38918 * 120.07035 * 179.97438 * 14 13 3 16 16 C 1.38103 * 119.92232 * 180.26003 * 15 14 13 17 17 C 1.38291 * 120.07426 * 359.43747 * 16 15 14 18 18 C 1.50698 * 119.92195 * 180.27995 * 17 16 15 19 19 H 1.09011 * 109.46454 * 180.27747 * 18 17 16 20 20 C 1.52995 * 109.47276 * 300.27843 * 18 17 16 21 21 N 1.46901 * 109.46640 * 185.00054 * 20 18 17 22 22 C 1.53002 * 109.46811 * 60.28500 * 18 17 16 23 23 O 1.42895 * 109.47536 * 64.99579 * 22 18 17 24 24 C 1.38281 * 120.14889 * 0.56232 * 17 16 15 25 25 C 1.38103 * 120.07737 * 359.72142 * 24 17 16 26 26 H 1.08995 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47259 * 299.99902 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.00070 * 1 2 3 29 29 H 1.09004 * 109.47259 * 240.00098 * 2 1 3 30 30 H 1.09003 * 109.47101 * 119.99930 * 2 1 3 31 31 H 0.96997 * 120.00170 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99787 * 94.99683 * 13 3 2 33 33 H 1.08002 * 120.03585 * 359.97438 * 15 14 13 34 34 H 1.08004 * 119.95970 * 179.72372 * 16 15 14 35 35 H 1.08997 * 109.47419 * 304.99817 * 20 18 17 36 36 H 1.09000 * 109.46710 * 65.00593 * 20 18 17 37 37 H 1.00902 * 110.99670 * 180.02562 * 21 20 18 38 38 H 1.00901 * 111.00260 * 303.95260 * 21 20 18 39 39 H 1.09002 * 109.46291 * 184.99467 * 22 18 17 40 40 H 1.09001 * 109.46908 * 304.98834 * 22 18 17 41 41 H 0.96696 * 114.00191 * 179.97438 * 23 22 18 42 42 H 1.07998 * 119.96595 * 179.74375 * 24 17 16 43 43 H 1.08001 * 120.04036 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5987 1.5461 -0.1941 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6166 -2.6101 13 7 1.6524 2.0975 1.2519 14 6 0.3909 2.6850 1.3711 15 6 0.0217 3.3060 2.5576 16 6 -1.2285 3.8813 2.6740 17 6 -2.1079 3.8497 1.6072 18 6 -3.4688 4.4840 1.7359 19 1 -4.0186 4.3566 0.8033 20 6 -4.2376 3.8148 2.8768 21 7 -5.6051 4.3493 2.9254 22 6 -3.3097 5.9762 2.0343 23 8 -2.6954 6.6225 0.9177 24 6 -1.7435 3.2324 0.4248 25 6 -0.4971 2.6500 0.3035 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0610 -2.9498 32 1 2.2720 2.1230 1.9978 33 1 0.7097 3.3349 3.3896 34 1 -1.5178 4.3604 3.5977 35 1 -4.2740 2.7385 2.7083 36 1 -3.7344 4.0178 3.8222 37 1 -6.1336 3.9229 3.6717 38 1 -5.5976 5.3542 3.0164 39 1 -4.2902 6.4170 2.2150 40 1 -2.6848 6.1054 2.9180 41 1 -2.5636 7.5730 1.0370 42 1 -2.4342 3.2059 -0.4051 43 1 -0.2133 2.1676 -0.6202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:26 Heat of formation + Delta-G solvation = -52.417292 kcal Electronic energy + Delta-G solvation = -21904.515988 eV Core-core repulsion = 18755.031845 eV Total energy + Delta-G solvation = -3149.484142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72856 -38.82658 -37.22654 -36.01154 -34.53560 -33.12294 -31.92294 -31.28729 -29.38726 -27.44115 -25.76060 -24.84889 -23.94855 -22.83906 -21.62871 -20.32205 -18.99272 -18.41057 -17.84093 -17.15444 -16.93196 -16.38263 -15.95762 -15.64524 -15.28584 -15.14035 -15.02919 -14.62048 -14.56317 -14.16671 -13.95057 -13.57929 -13.41045 -13.20005 -13.16192 -12.82191 -12.73209 -12.49964 -12.28441 -12.02298 -11.90833 -11.83975 -11.60845 -11.33739 -10.97354 -10.78558 -10.65272 -10.31689 -9.62493 -9.53965 -8.19095 -7.88892 -6.33148 0.72207 0.91385 1.39842 1.41685 1.52777 2.36876 3.01304 3.10239 3.14562 3.42133 3.65442 4.05980 4.07515 4.22797 4.26812 4.40784 4.51663 4.55685 4.59531 4.61334 4.68783 4.73202 4.76907 4.90668 4.99198 5.07956 5.11663 5.22174 5.28425 5.31254 5.41077 5.56653 5.63776 5.69829 5.75225 5.88234 5.98686 6.16339 6.25592 6.27640 6.59102 6.65007 6.90472 7.01205 7.27318 7.40213 8.86882 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.003733 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.206105 B = 7497.881842 C = 7771.086299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.284 3.716 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.059 0.941 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.281 1.281 13 N -0.733 5.733 14 C 0.210 3.790 15 C -0.216 4.216 16 C -0.065 4.065 17 C -0.142 4.142 18 C -0.033 4.033 19 H 0.069 0.931 20 C 0.080 3.920 21 N -0.858 5.858 22 C 0.084 3.916 23 O -0.591 6.591 24 C -0.074 4.074 25 C -0.214 4.214 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.392 0.608 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.353 0.647 38 H 0.346 0.654 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.115 0.885 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 9.324 11.847 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.207 1.207 13 N -0.357 5.357 14 C 0.104 3.896 15 C -0.239 4.239 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.052 4.052 19 H 0.088 0.912 20 C -0.051 4.051 21 N -0.391 5.391 22 C 0.007 3.993 23 O -0.399 6.399 24 C -0.093 4.093 25 C -0.237 4.237 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.144 0.856 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.241 0.759 42 H 0.133 0.867 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.182 8.214 10.512 19.471 hybrid contribution 1.741 0.527 0.741 1.965 sum -12.441 8.741 11.254 18.916 Atomic orbital electron populations 1.22034 0.96705 0.99975 1.00645 1.21844 0.94208 0.99593 1.00706 1.18322 0.93216 0.88858 0.81593 0.97778 1.21612 0.92217 1.38524 1.06297 0.92265 1.25673 1.02935 0.94472 0.95112 1.70005 1.36704 1.38475 1.09801 0.85411 0.79729 0.77827 0.78054 1.19178 1.20368 1.20695 1.45199 1.13305 1.60443 1.16768 1.18208 0.85878 0.91354 0.94186 1.20699 0.99261 1.07131 0.96853 1.20745 0.92076 0.97304 0.98241 1.19375 0.96979 1.03869 0.94228 1.19956 0.91941 0.93389 0.99962 0.91244 1.21644 0.88307 0.99164 0.96003 1.58709 1.14093 1.11271 1.55023 1.22299 0.96714 0.91918 0.88398 1.86542 1.83825 1.27174 1.42320 1.20820 0.94961 0.96046 0.97491 1.20942 0.95774 1.07928 0.99015 0.93769 0.92704 0.93949 0.91135 0.95202 0.92584 0.77419 0.85576 0.84385 0.91447 0.93882 0.83363 0.83986 0.91695 0.92926 0.75899 0.86734 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.22 71.98 0.59 -5.14 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.41 2.20 44.24 0.10 14.51 16 4 H 0.00 0.26 6.48 -2.39 -0.02 0.24 16 5 C -0.55 -29.77 8.73 25.60 0.22 -29.55 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.39 16 9 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.73 -31.66 5.18 -322.50 -1.67 -33.33 16 14 C 0.21 8.27 5.48 38.22 0.21 8.48 16 15 C -0.22 -7.03 9.90 22.40 0.22 -6.81 16 16 C -0.07 -1.80 8.69 22.25 0.19 -1.61 16 17 C -0.14 -4.09 4.55 -19.84 -0.09 -4.18 16 18 C -0.03 -0.76 2.48 -11.54 -0.03 -0.79 16 19 H 0.07 1.82 7.87 -2.38 -0.02 1.80 16 20 C 0.08 1.43 5.98 86.30 0.52 1.94 16 21 N -0.86 -12.31 9.62 -186.73 -1.80 -14.11 16 22 C 0.08 1.54 6.20 71.98 0.45 1.99 16 23 O -0.59 -13.45 13.41 -148.98 -2.00 -15.44 16 24 C -0.07 -2.57 9.66 22.25 0.21 -2.36 16 25 C -0.21 -8.56 6.72 22.40 0.15 -8.41 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.05 2.24 5.39 -2.38 -0.01 2.22 16 28 H 0.04 1.80 6.35 -2.39 -0.02 1.78 16 29 H 0.07 3.83 5.95 -2.38 -0.01 3.82 16 30 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.39 15.80 8.55 -92.71 -0.79 15.01 16 33 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.14 2.86 7.12 -2.91 -0.02 2.84 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 0.66 7.55 -2.39 -0.02 0.64 16 37 H 0.35 3.75 9.08 -89.69 -0.81 2.94 16 38 H 0.35 3.85 7.15 -89.69 -0.64 3.21 16 39 H 0.07 0.86 6.47 -2.39 -0.02 0.85 16 40 H 0.05 0.85 7.24 -2.39 -0.02 0.83 16 41 H 0.39 5.10 9.12 -74.06 -0.68 4.42 16 42 H 0.11 3.72 7.94 -2.91 -0.02 3.70 16 43 H 0.11 4.77 4.01 -2.91 -0.01 4.75 16 Total: -1.00 -64.22 334.72 -1.70 -65.92 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -1.86 Total: 39.71 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 3.36 Total: -36.36 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -3.22 Total: -98.83 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -2.00 Total: -15.44 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.22 -1.70 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.501 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds