Wall clock time and date at job start Tue Mar 31 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 H 1.09005 * 109.47006 * 181.54209 * 3 2 1 5 5 C 1.50695 * 109.47305 * 61.54012 * 3 2 1 6 6 H 1.08003 * 119.99816 * 239.99483 * 5 3 2 7 7 C 1.37875 * 120.00176 * 60.00158 * 5 3 2 8 8 N 1.31515 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00110 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47172 * 89.99849 * 9 7 5 11 11 H 1.48502 * 109.47419 * 209.99812 * 9 7 5 12 12 H 1.48503 * 109.47492 * 329.99759 * 9 7 5 13 13 N 1.46900 * 109.47243 * 301.53641 * 3 2 1 14 14 C 1.46949 * 111.00471 * 181.50048 * 13 3 2 15 15 C 1.53044 * 109.36965 * 183.18687 * 14 13 3 16 16 N 1.46953 * 109.36838 * 301.60614 * 15 14 13 17 17 C 1.46900 * 111.00250 * 183.18737 * 16 15 14 18 18 C 1.50699 * 109.47208 * 169.99862 * 17 16 15 19 19 C 1.34516 * 125.79114 * 89.99639 * 18 17 16 20 20 C 1.41381 * 106.83957 * 179.75130 * 19 18 17 21 21 C 1.34511 * 106.84354 * 0.37230 * 20 19 18 22 22 O 1.34301 * 125.78716 * 269.97399 * 18 17 16 23 23 C 1.46958 * 110.88329 * 59.31240 * 16 15 14 24 24 C 1.46961 * 110.99881 * 305.30395 * 13 3 2 25 25 H 1.09000 * 109.46719 * 304.72837 * 1 2 3 26 26 H 1.09004 * 109.46610 * 64.72248 * 1 2 3 27 27 H 1.08993 * 109.47171 * 184.72227 * 1 2 3 28 28 H 1.08999 * 109.47430 * 239.99748 * 2 1 3 29 29 H 1.09006 * 109.47133 * 119.99699 * 2 1 3 30 30 H 0.96999 * 120.00058 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.48826 * 63.22295 * 14 13 3 32 32 H 1.09000 * 109.49312 * 303.16564 * 14 13 3 33 33 H 1.08994 * 109.49329 * 181.63352 * 15 14 13 34 34 H 1.09003 * 109.48491 * 61.56532 * 15 14 13 35 35 H 1.08998 * 109.47463 * 49.99344 * 17 16 15 36 36 H 1.09002 * 109.46564 * 289.99500 * 17 16 15 37 37 H 1.08004 * 126.57836 * 359.97438 * 19 18 17 38 38 H 1.08005 * 126.57787 * 180.23514 * 20 19 18 39 39 H 1.07998 * 125.79249 * 179.88916 * 21 20 19 40 40 H 1.09003 * 109.48503 * 60.64807 * 23 16 15 41 41 H 1.08994 * 109.49124 * 180.71196 * 23 16 15 42 42 H 1.08999 * 109.49102 * 296.77566 * 24 13 3 43 43 H 1.09005 * 109.48638 * 56.84418 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0277 5 6 1.5692 2.1418 1.2491 6 1 0.9461 3.0208 1.1735 7 6 1.9338 1.6597 2.4882 8 7 2.6922 0.5891 2.5802 9 14 1.3507 2.5269 4.0365 10 1 0.0530 1.9488 4.4688 11 1 2.3566 2.3461 5.1139 12 1 1.1790 3.9754 3.7577 13 7 1.5203 2.1456 -1.1804 14 6 2.0192 3.5268 -1.2328 15 6 1.3938 4.2474 -2.4295 16 7 1.7276 3.5227 -3.6636 17 6 1.2079 4.2259 -4.8440 18 6 1.7716 3.5969 -6.0920 19 6 1.2190 2.5815 -6.7798 20 6 2.0725 2.3163 -7.8752 21 6 3.1000 3.1800 -7.7867 22 8 2.9107 3.9553 -6.7065 23 6 1.2286 2.1414 -3.6112 24 6 1.8542 1.4209 -2.4145 25 1 -0.3633 0.5855 0.8446 26 1 -0.3633 0.4388 -0.9293 27 1 -0.3633 -1.0241 0.0846 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.9491 0.2502 3.4520 31 1 3.1040 3.5178 -1.3402 32 1 1.7489 4.0464 -0.3135 33 1 1.7847 5.2632 -2.4873 34 1 0.3110 4.2803 -2.3088 35 1 1.5019 5.2746 -4.8010 36 1 0.1204 4.1538 -4.8602 37 1 0.2979 2.0697 -6.5429 38 1 1.9285 1.5631 -8.6358 39 1 3.9333 3.2424 -8.4708 40 1 0.1439 2.1505 -3.5038 41 1 1.4990 1.6220 -4.5305 42 1 2.9370 1.3879 -2.5353 43 1 1.4632 0.4050 -2.3567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:14 Heat of formation + Delta-G solvation = 32.038268 kcal Electronic energy + Delta-G solvation = -22427.386808 eV Core-core repulsion = 19281.564933 eV Total energy + Delta-G solvation = -3145.821875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.56191 -38.85964 -36.06246 -33.22892 -32.78278 -31.36738 -30.28744 -30.02478 -27.27312 -25.82387 -23.88318 -23.12411 -22.41727 -21.69095 -20.39014 -19.73373 -18.71511 -17.33846 -16.44780 -16.06605 -15.53923 -15.08872 -14.58764 -14.51560 -14.19656 -13.72106 -13.59980 -13.48930 -13.07461 -12.85046 -12.72944 -12.18666 -12.11741 -11.86383 -11.62226 -11.43245 -10.98229 -10.86518 -10.75402 -10.53468 -10.43430 -10.16047 -9.93247 -9.84311 -9.62113 -9.36574 -8.78624 -8.56115 -8.37640 -8.13940 -7.11350 -5.98427 -4.02067 1.69446 2.56601 2.98246 3.31426 3.38319 3.40787 4.16440 4.42016 4.66399 4.96396 4.98631 5.01519 5.18472 5.30262 5.33255 5.46214 5.58943 5.74963 5.80429 5.86647 5.89048 5.91955 6.06304 6.09456 6.25024 6.45351 6.46563 6.53053 6.58822 6.64025 6.73280 6.80029 7.09751 7.11285 7.18386 7.23414 7.37511 7.44950 7.67750 7.77441 7.85422 8.22304 8.36728 8.62678 9.03214 9.61848 11.07944 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033519 B = 0.003967 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.138979 B = 7055.889755 C = 7428.766122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.530 5.530 14 C 0.067 3.933 15 C 0.060 3.940 16 N -0.536 5.536 17 C 0.130 3.870 18 C 0.010 3.990 19 C -0.212 4.212 20 C -0.214 4.214 21 C -0.046 4.046 22 O -0.170 6.170 23 C 0.057 3.943 24 C 0.054 3.946 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.199 0.801 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.027 0.973 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 4.576 -16.934 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.255 5.255 14 C -0.061 4.061 15 C -0.067 4.067 16 N -0.262 5.262 17 C 0.002 3.998 18 C -0.041 4.041 19 C -0.232 4.232 20 C -0.234 4.234 21 C -0.114 4.114 22 O -0.065 6.065 23 C -0.071 4.071 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.216 0.784 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.046 4.700 -16.659 17.430 hybrid contribution -0.272 0.065 0.646 0.704 sum -2.317 4.765 -16.013 16.867 Atomic orbital electron populations 1.21469 0.97321 0.97602 1.01361 1.21599 0.95103 0.98294 1.00155 1.19253 0.92598 0.90716 0.86291 0.98508 1.21040 1.30839 1.11857 0.89620 0.92065 1.24900 0.95217 0.95111 0.98906 1.69877 1.36517 1.22697 1.24084 0.86580 0.78368 0.79971 0.82963 1.20754 1.21428 1.19980 1.62289 1.59646 1.01344 1.02237 1.21977 0.96596 0.91066 0.96504 1.22265 0.98929 0.96783 0.88767 1.62145 1.59644 1.02928 1.01485 1.20455 0.96434 0.98010 0.84887 1.22324 0.86523 0.98677 0.96620 1.21596 1.03200 1.00583 0.97778 1.21795 0.96638 1.03370 1.01566 1.23987 1.01786 0.94592 0.91052 1.84035 1.37357 1.51126 1.33979 1.22277 0.97494 0.88403 0.98878 1.22117 0.97659 0.97805 0.89866 0.92173 0.94295 0.96584 0.96767 0.88947 0.93044 0.95394 0.89281 0.91059 0.94101 0.89258 0.91711 0.83717 0.83681 0.78380 0.94306 0.90961 0.95494 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.44 37.16 0.35 -2.27 16 2 C -0.11 -2.69 4.96 -26.73 -0.13 -2.82 16 3 C 0.22 5.36 1.76 -68.87 -0.12 5.24 16 4 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 16 5 C -0.49 -13.07 6.63 -34.44 -0.23 -13.30 16 6 H 0.06 1.62 6.80 -52.48 -0.36 1.26 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.08 11.31 55.43 0.63 -24.46 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.53 -11.13 3.85 -227.88 -0.88 -12.01 16 14 C 0.07 1.31 5.39 -3.77 -0.02 1.29 16 15 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 16 N -0.54 -8.15 4.70 -235.92 -1.11 -9.26 16 17 C 0.13 1.61 5.50 -4.98 -0.03 1.58 16 18 C 0.01 0.12 6.23 -35.62 -0.22 -0.10 16 19 C -0.21 -2.53 9.32 -39.70 -0.37 -2.90 16 20 C -0.21 -2.30 10.91 -39.70 -0.43 -2.73 16 21 C -0.05 -0.49 12.09 29.41 0.36 -0.13 16 22 O -0.17 -2.26 10.65 5.69 0.06 -2.20 16 23 C 0.06 0.90 5.37 -3.77 -0.02 0.88 16 24 C 0.05 1.02 4.99 -3.76 -0.02 1.00 16 25 H 0.06 1.43 7.11 -51.93 -0.37 1.06 16 26 H 0.04 0.80 7.29 -51.93 -0.38 0.42 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.01 0.31 6.35 -51.93 -0.33 -0.02 16 29 H 0.09 2.46 6.03 -51.93 -0.31 2.15 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.09 1.83 6.47 -51.93 -0.34 1.49 16 33 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.00 8.03 -51.93 -0.42 0.59 16 36 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.07 6.14 -51.93 -0.32 0.76 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.47 5.76 -51.93 -0.30 1.17 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -28.88 332.36 -9.21 -38.09 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.90 Total: 0.64 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.00 Total: -11.83 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -1.36 Total: -45.73 kcal Atomic # 8 Polarization: -2.26 SS G_CDS: 0.06 Total: -2.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.88 -9.21 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.129 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds