Wall clock time and date at job start Tue Mar 31 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.08999 * 109.46971 * 56.09072 * 3 2 1 5 5 C 1.50697 * 109.46840 * 176.09343 * 3 2 1 6 6 H 1.08000 * 119.99960 * 120.00874 * 5 3 2 7 7 C 1.37878 * 119.99950 * 299.99890 * 5 3 2 8 8 N 1.31518 * 119.99785 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00190 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47566 * 89.99839 * 9 7 5 11 11 H 1.48508 * 109.47258 * 210.00285 * 9 7 5 12 12 H 1.48510 * 109.47058 * 329.99748 * 9 7 5 13 13 N 1.46900 * 109.47037 * 296.09082 * 3 2 1 14 14 C 1.46951 * 111.00215 * 299.20727 * 13 3 2 15 15 C 1.53054 * 109.38183 * 176.81995 * 14 13 3 16 16 N 1.46959 * 109.36092 * 58.39427 * 15 14 13 17 17 C 1.46901 * 110.99864 * 176.80699 * 16 15 14 18 18 C 1.50707 * 109.46882 * 169.99874 * 17 16 15 19 19 C 1.34511 * 125.78844 * 89.72172 * 18 17 16 20 20 C 1.41384 * 106.84105 * 179.88890 * 19 18 17 21 21 C 1.34515 * 106.84127 * 0.37006 * 20 19 18 22 22 O 1.34299 * 125.79157 * 270.02784 * 18 17 16 23 23 C 1.46951 * 110.88035 * 300.67700 * 16 15 14 24 24 C 1.46963 * 111.01567 * 175.39469 * 13 3 2 25 25 H 1.08998 * 109.46595 * 305.06151 * 1 2 3 26 26 H 1.08991 * 109.47166 * 65.06432 * 1 2 3 27 27 H 1.09001 * 109.46872 * 185.06564 * 1 2 3 28 28 H 1.09005 * 109.47008 * 239.99950 * 2 1 3 29 29 H 1.09002 * 109.47172 * 120.00651 * 2 1 3 30 30 H 0.97008 * 119.99735 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.48658 * 56.84687 * 14 13 3 32 32 H 1.08999 * 109.48987 * 296.80332 * 14 13 3 33 33 H 1.09003 * 109.48755 * 178.35812 * 15 14 13 34 34 H 1.08997 * 109.49406 * 298.42635 * 15 14 13 35 35 H 1.08994 * 109.47180 * 289.99606 * 17 16 15 36 36 H 1.08998 * 109.46902 * 50.00169 * 17 16 15 37 37 H 1.08000 * 126.58085 * 0.02562 * 19 18 17 38 38 H 1.07997 * 126.57763 * 180.16336 * 20 19 18 39 39 H 1.07990 * 125.79276 * 179.74797 * 21 20 19 40 40 H 1.09006 * 109.49196 * 179.28494 * 23 16 15 41 41 H 1.09004 * 109.49365 * 299.35504 * 23 16 15 42 42 H 1.09006 * 109.46592 * 63.20145 * 24 13 3 43 43 H 1.08999 * 109.50601 * 303.16451 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6206 1.9761 0.8529 5 6 3.5439 1.4435 0.0968 6 1 4.1351 1.8932 -0.6872 7 6 4.1649 0.8706 1.1863 8 7 5.4774 0.8720 1.2710 9 14 3.1423 0.0925 2.5421 10 1 2.9158 -1.3416 2.2304 11 1 3.8630 0.2102 3.8353 12 1 1.8351 0.7906 2.6387 13 7 1.6290 2.1072 -1.2439 14 6 2.1926 1.4246 -2.4169 15 6 1.6783 2.0974 -3.6918 16 7 2.0568 3.5174 -3.6800 17 6 1.6462 4.1820 -4.9241 18 6 1.8247 5.6715 -4.7804 19 6 2.9383 6.3631 -5.0822 20 6 2.6665 7.7213 -4.7986 21 6 1.4058 7.7774 -4.3327 22 8 0.9009 6.5329 -4.3239 23 6 1.4928 4.2001 -2.5073 24 6 2.0069 3.5273 -1.2323 25 1 -0.3632 0.5904 0.8412 26 1 -0.3633 0.4332 -0.9318 27 1 -0.3633 -1.0237 0.0907 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9144 0.4686 2.0374 31 1 1.8880 0.3780 -2.4098 32 1 3.2804 1.4871 -2.3861 33 1 2.1182 1.6111 -4.5624 34 1 0.5927 2.0108 -3.7362 35 1 2.2602 3.8204 -5.7489 36 1 0.5985 3.9594 -5.1262 37 1 3.8620 5.9588 -5.4691 38 1 3.3425 8.5535 -4.9278 39 1 0.8877 8.6713 -4.0187 40 1 1.7973 5.2467 -2.5142 41 1 0.4050 4.1373 -2.5381 42 1 3.0926 3.6139 -1.1879 43 1 1.5674 4.0139 -0.3616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:17 Heat of formation + Delta-G solvation = 38.236147 kcal Electronic energy + Delta-G solvation = -22623.962496 eV Core-core repulsion = 19478.409382 eV Total energy + Delta-G solvation = -3145.553114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.57746 -38.90316 -36.21272 -33.13587 -32.67410 -31.85553 -30.65305 -29.87407 -27.69316 -26.01459 -23.63810 -23.20489 -22.24608 -21.71949 -20.45610 -19.89666 -18.92743 -17.32504 -16.65121 -16.43599 -15.61337 -14.91507 -14.76581 -14.61815 -14.19941 -13.96839 -13.73085 -13.21074 -12.80756 -12.75649 -12.58805 -12.57417 -12.36248 -11.96347 -11.89049 -11.61469 -11.41895 -11.00145 -10.82202 -10.67779 -10.48664 -10.13589 -9.98444 -9.86852 -9.57534 -9.54479 -9.19336 -8.55382 -8.54156 -8.06134 -7.13483 -6.09085 -4.09474 1.71647 2.63615 2.98647 3.26540 3.37932 3.39875 4.21545 4.39122 4.63450 4.90543 5.01317 5.05072 5.21591 5.27326 5.42429 5.45446 5.61336 5.78217 5.84214 5.89623 5.92601 5.97770 6.00474 6.02619 6.08855 6.13307 6.21444 6.29801 6.51161 6.53011 6.67515 6.71769 6.82118 6.86527 6.92444 7.08411 7.14627 7.21998 7.25316 7.32951 7.58587 8.11372 8.15776 8.47903 8.94839 9.54309 11.03687 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.004557 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.452851 B = 6142.554384 C = 6552.411010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.181 3.819 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.527 5.527 14 C 0.059 3.941 15 C 0.060 3.940 16 N -0.531 5.531 17 C 0.134 3.866 18 C -0.006 4.006 19 C -0.193 4.193 20 C -0.214 4.214 21 C -0.046 4.046 22 O -0.178 6.178 23 C 0.062 3.938 24 C 0.064 3.936 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.199 0.801 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 8.288 -11.795 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.252 5.252 14 C -0.070 4.070 15 C -0.068 4.068 16 N -0.257 5.257 17 C 0.007 3.993 18 C -0.056 4.056 19 C -0.213 4.213 20 C -0.234 4.234 21 C -0.114 4.114 22 O -0.074 6.074 23 C -0.066 4.066 24 C -0.065 4.065 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.216 0.784 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.354 8.138 -11.587 16.970 hybrid contribution -0.053 -0.259 0.835 0.876 sum -9.407 7.879 -10.752 16.315 Atomic orbital electron populations 1.21714 0.97396 0.99146 1.01632 1.21953 0.93987 0.99389 1.00671 1.19704 0.94502 0.90334 0.88118 0.94461 1.21633 0.90455 1.38484 1.07533 0.90368 1.24980 0.94672 0.95416 0.97793 1.69926 1.08248 1.44973 1.30392 0.86874 0.80540 0.79838 0.81077 1.20591 1.22663 1.18946 1.62561 1.57843 1.01519 1.03239 1.22023 0.99254 0.97206 0.88469 1.22263 0.98199 0.87120 0.99219 1.62380 1.59432 1.02812 1.01059 1.20593 1.00141 0.84062 0.94520 1.22254 0.88601 0.92329 1.02387 1.21581 0.99328 0.93161 1.07279 1.21837 0.97182 0.97772 1.06562 1.23974 0.95516 0.86113 1.05760 1.84046 1.40953 1.16650 1.65794 1.22227 0.96773 0.97355 0.90201 1.21927 1.00066 0.89551 0.94908 0.93853 0.92282 0.94873 0.92196 0.93534 0.92729 0.90743 0.92611 0.90974 0.94599 0.87976 0.93463 0.83432 0.83639 0.78383 0.91228 0.94751 0.92822 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.73 37.16 0.36 -2.19 16 2 C -0.12 -2.61 4.69 -26.73 -0.13 -2.74 16 3 C 0.18 4.18 1.36 -68.87 -0.09 4.09 16 4 H 0.04 0.92 7.18 -51.93 -0.37 0.54 16 5 C -0.54 -14.74 7.71 -34.44 -0.27 -15.01 16 6 H 0.08 2.35 6.05 -52.49 -0.32 2.03 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.89 21.86 24.40 -169.99 -4.15 17.71 16 10 H -0.28 -6.72 6.84 56.52 0.39 -6.34 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.53 -10.65 4.20 -227.87 -0.96 -11.60 16 14 C 0.06 1.11 4.96 -3.77 -0.02 1.09 16 15 C 0.06 0.91 5.58 -3.76 -0.02 0.89 16 16 N -0.53 -8.26 4.85 -235.91 -1.14 -9.41 16 17 C 0.13 1.70 5.82 -4.97 -0.03 1.67 16 18 C -0.01 -0.07 5.02 -35.62 -0.18 -0.25 16 19 C -0.19 -2.45 10.81 -39.70 -0.43 -2.88 16 20 C -0.21 -2.41 10.91 -39.70 -0.43 -2.84 16 21 C -0.05 -0.49 12.09 29.42 0.36 -0.14 16 22 O -0.18 -2.37 9.93 5.71 0.06 -2.31 16 23 C 0.06 1.04 5.07 -3.77 -0.02 1.02 16 24 C 0.06 1.26 5.32 -3.76 -0.02 1.24 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.25 6.16 -51.93 -0.32 0.93 16 29 H 0.05 1.07 3.22 -51.93 -0.17 0.90 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.07 1.36 6.08 -51.93 -0.32 1.05 16 32 H 0.06 1.23 6.53 -51.93 -0.34 0.89 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.22 6.86 -51.93 -0.36 0.86 16 43 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -30.33 326.01 -8.27 -38.60 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.75 Total: 2.61 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.01 Total: -14.05 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -1.33 Total: -47.46 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.06 Total: -2.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.33 -8.27 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.834 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds