Wall clock time and date at job start Tue Mar 31 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.08999 * 109.46971 * 56.09072 * 3 2 1 5 5 C 1.50697 * 109.46840 * 176.09343 * 3 2 1 6 6 H 1.08000 * 119.99960 * 120.00874 * 5 3 2 7 7 C 1.37878 * 119.99950 * 299.99890 * 5 3 2 8 8 N 1.31518 * 119.99785 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00190 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47566 * 89.99839 * 9 7 5 11 11 H 1.48508 * 109.47258 * 210.00285 * 9 7 5 12 12 H 1.48510 * 109.47058 * 329.99748 * 9 7 5 13 13 N 1.46900 * 109.47037 * 296.09082 * 3 2 1 14 14 C 1.46951 * 111.00215 * 299.20727 * 13 3 2 15 15 C 1.53054 * 109.38183 * 176.81995 * 14 13 3 16 16 N 1.46959 * 109.36092 * 58.39427 * 15 14 13 17 17 C 1.46901 * 110.99864 * 176.80699 * 16 15 14 18 18 C 1.50707 * 109.46882 * 169.99874 * 17 16 15 19 19 C 1.34511 * 125.78844 * 89.72172 * 18 17 16 20 20 C 1.41384 * 106.84105 * 179.88890 * 19 18 17 21 21 C 1.34515 * 106.84127 * 0.37006 * 20 19 18 22 22 O 1.34299 * 125.79157 * 270.02784 * 18 17 16 23 23 C 1.46951 * 110.88035 * 300.67700 * 16 15 14 24 24 C 1.46963 * 111.01567 * 175.39469 * 13 3 2 25 25 H 1.08998 * 109.46595 * 305.06151 * 1 2 3 26 26 H 1.08991 * 109.47166 * 65.06432 * 1 2 3 27 27 H 1.09001 * 109.46872 * 185.06564 * 1 2 3 28 28 H 1.09005 * 109.47008 * 239.99950 * 2 1 3 29 29 H 1.09002 * 109.47172 * 120.00651 * 2 1 3 30 30 H 0.97008 * 119.99735 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.48658 * 56.84687 * 14 13 3 32 32 H 1.08999 * 109.48987 * 296.80332 * 14 13 3 33 33 H 1.09003 * 109.48755 * 178.35812 * 15 14 13 34 34 H 1.08997 * 109.49406 * 298.42635 * 15 14 13 35 35 H 1.08994 * 109.47180 * 289.99606 * 17 16 15 36 36 H 1.08998 * 109.46902 * 50.00169 * 17 16 15 37 37 H 1.08000 * 126.58085 * 0.02562 * 19 18 17 38 38 H 1.07997 * 126.57763 * 180.16336 * 20 19 18 39 39 H 1.07990 * 125.79276 * 179.74797 * 21 20 19 40 40 H 1.09006 * 109.49196 * 179.28494 * 23 16 15 41 41 H 1.09004 * 109.49365 * 299.35504 * 23 16 15 42 42 H 1.09006 * 109.46592 * 63.20145 * 24 13 3 43 43 H 1.08999 * 109.50601 * 303.16451 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6206 1.9761 0.8529 5 6 3.5439 1.4435 0.0968 6 1 4.1351 1.8932 -0.6872 7 6 4.1649 0.8706 1.1863 8 7 5.4774 0.8720 1.2710 9 14 3.1423 0.0925 2.5421 10 1 2.9158 -1.3416 2.2304 11 1 3.8630 0.2102 3.8353 12 1 1.8351 0.7906 2.6387 13 7 1.6290 2.1072 -1.2439 14 6 2.1926 1.4246 -2.4169 15 6 1.6783 2.0974 -3.6918 16 7 2.0568 3.5174 -3.6800 17 6 1.6462 4.1820 -4.9241 18 6 1.8247 5.6715 -4.7804 19 6 2.9383 6.3631 -5.0822 20 6 2.6665 7.7213 -4.7986 21 6 1.4058 7.7774 -4.3327 22 8 0.9009 6.5329 -4.3239 23 6 1.4928 4.2001 -2.5073 24 6 2.0069 3.5273 -1.2323 25 1 -0.3632 0.5904 0.8412 26 1 -0.3633 0.4332 -0.9318 27 1 -0.3633 -1.0237 0.0907 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9144 0.4686 2.0374 31 1 1.8880 0.3780 -2.4098 32 1 3.2804 1.4871 -2.3861 33 1 2.1182 1.6111 -4.5624 34 1 0.5927 2.0108 -3.7362 35 1 2.2602 3.8204 -5.7489 36 1 0.5985 3.9594 -5.1262 37 1 3.8620 5.9588 -5.4691 38 1 3.3425 8.5535 -4.9278 39 1 0.8877 8.6713 -4.0187 40 1 1.7973 5.2467 -2.5142 41 1 0.4050 4.1373 -2.5381 42 1 3.0926 3.6139 -1.1879 43 1 1.5674 4.0139 -0.3616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255171808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:16 Heat of formation + Delta-G solvation = 16.599185 kcal Electronic energy + Delta-G solvation = -22624.900746 eV Core-core repulsion = 19478.409382 eV Total energy + Delta-G solvation = -3146.491363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.48869 -40.39079 -37.72365 -34.65043 -33.93985 -33.60255 -31.98110 -31.13331 -29.30812 -27.46840 -25.08074 -24.66794 -23.86658 -22.63890 -21.74828 -21.17401 -20.61897 -18.61418 -18.25785 -17.68709 -17.10380 -16.24531 -16.02565 -15.87942 -15.84165 -15.55704 -15.19611 -14.73489 -14.37321 -14.00373 -13.83947 -13.69960 -13.61185 -13.49619 -13.43906 -12.95263 -12.91341 -12.52293 -12.49875 -12.15481 -12.10803 -11.92963 -11.61330 -11.40808 -11.26864 -11.10175 -10.80491 -10.66744 -9.52746 -9.20210 -8.91635 -8.30279 -6.34269 0.80128 1.29469 1.35269 1.45552 1.73706 2.12306 2.30958 3.03214 3.04890 3.27200 3.72824 3.99939 4.17897 4.19191 4.20386 4.28092 4.39357 4.40981 4.43476 4.52657 4.57958 4.64875 4.66975 4.70342 4.85374 4.94673 4.95822 5.06081 5.09157 5.14791 5.18335 5.23593 5.25283 5.29953 5.45766 5.52983 5.61765 5.64120 5.97755 6.03856 6.20055 6.26262 6.39712 6.46935 6.74375 7.33477 8.86347 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.004557 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.452851 B = 6142.554384 C = 6552.411010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.122 4.122 3 C 0.184 3.816 4 H 0.028 0.972 5 C -0.534 4.534 6 H 0.033 0.967 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.265 1.265 11 H -0.303 1.303 12 H -0.247 1.247 13 N -0.515 5.515 14 C 0.061 3.939 15 C 0.069 3.931 16 N -0.550 5.550 17 C 0.139 3.861 18 C -0.027 4.027 19 C -0.206 4.206 20 C -0.230 4.230 21 C -0.041 4.041 22 O -0.193 6.193 23 C 0.080 3.920 24 C 0.066 3.934 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.082 0.918 32 H 0.013 0.987 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.236 0.764 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.011 0.989 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 8.338 -12.591 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.075 3.925 4 H 0.046 0.954 5 C -0.573 4.573 6 H 0.051 0.949 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.231 1.231 12 H -0.171 1.171 13 N -0.238 5.238 14 C -0.067 4.067 15 C -0.058 4.058 16 N -0.276 5.276 17 C 0.012 3.988 18 C -0.077 4.077 19 C -0.226 4.226 20 C -0.249 4.249 21 C -0.109 4.109 22 O -0.090 6.090 23 C -0.048 4.048 24 C -0.063 4.063 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.208 8.192 -12.414 19.242 hybrid contribution 0.920 -0.154 0.991 1.361 sum -11.288 8.038 -11.423 17.959 Atomic orbital electron populations 1.21622 0.94168 1.00947 1.02186 1.21864 0.96785 0.97183 1.00093 1.19604 0.91405 0.92137 0.89322 0.95440 1.21854 0.92730 1.36824 1.05930 0.94859 1.25825 0.95623 0.96301 1.00477 1.70082 1.10313 1.46986 1.31527 0.85856 0.79420 0.79655 0.77490 1.19115 1.23083 1.17058 1.62610 1.56988 1.01593 1.02645 1.22042 0.96701 0.98192 0.89815 1.22182 0.99044 0.86854 0.97771 1.62314 1.60179 1.03134 1.01958 1.20643 1.01245 0.83681 0.93215 1.22372 0.88997 0.92715 1.03613 1.21856 0.99423 0.94182 1.07123 1.22165 0.98003 0.97793 1.06889 1.24750 0.95598 0.86262 1.04241 1.84034 1.41350 1.17540 1.66054 1.21954 0.96843 0.96848 0.89130 1.21908 0.97470 0.89780 0.97101 0.93783 0.91367 0.92356 0.92163 0.94788 0.92750 0.89993 0.96898 0.88489 0.93019 0.86132 0.92166 0.83120 0.81702 0.74818 0.91361 0.93923 0.97080 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.73 71.98 0.70 -3.60 16 2 C -0.12 -4.99 4.69 30.59 0.14 -4.85 16 3 C 0.18 8.50 1.36 44.17 0.06 8.56 16 4 H 0.03 1.34 7.18 -2.39 -0.02 1.32 16 5 C -0.53 -30.27 7.71 25.60 0.20 -30.07 16 6 H 0.03 2.15 6.05 -2.91 -0.02 2.13 16 7 C 0.02 0.90 5.45 84.65 0.46 1.36 16 8 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 9 Si 0.95 45.34 24.40 68.60 1.67 47.01 16 10 H -0.27 -12.02 6.84 99.48 0.68 -11.34 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 13 N -0.51 -20.71 4.20 -874.86 -3.68 -24.39 16 14 C 0.06 2.29 4.96 86.31 0.43 2.72 16 15 C 0.07 1.97 5.58 86.31 0.48 2.45 16 16 N -0.55 -16.51 4.85 -900.27 -4.37 -20.88 16 17 C 0.14 3.23 5.82 85.56 0.50 3.73 16 18 C -0.03 -0.69 5.02 24.83 0.12 -0.56 16 19 C -0.21 -5.02 10.81 22.19 0.24 -4.78 16 20 C -0.23 -4.79 10.91 22.19 0.24 -4.55 16 21 C -0.04 -0.80 12.09 66.97 0.81 0.01 16 22 O -0.19 -4.79 9.93 -2.47 -0.02 -4.81 16 23 C 0.08 2.62 5.07 86.31 0.44 3.06 16 24 C 0.07 2.67 5.32 86.31 0.46 3.12 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 2.44 6.16 -2.38 -0.01 2.43 16 29 H 0.03 1.48 3.22 -2.39 -0.01 1.48 16 30 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.08 2.92 6.08 -2.38 -0.01 2.90 16 32 H 0.01 0.59 6.53 -2.39 -0.02 0.57 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.24 2.48 8.06 -2.92 -0.02 2.45 16 40 H 0.07 2.25 6.22 -2.38 -0.01 2.23 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.01 0.53 6.86 -2.38 -0.02 0.51 16 43 H 0.07 2.61 8.13 -2.39 -0.02 2.59 16 Total: -1.00 -68.61 326.01 0.09 -68.52 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.90 Total: 17.61 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 5.28 Total: -23.39 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -7.74 Total: -104.94 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.02 Total: -4.81 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -68.61 0.09 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.122 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds