Wall clock time and date at job start Tue Mar 31 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47595 * 2 1 4 4 C 1.52996 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47171 * 304.99783 * 4 3 2 6 6 C 1.52999 * 109.47167 * 64.99466 * 4 3 2 7 7 C 1.52996 * 109.47340 * 184.99547 * 4 3 2 8 8 H 1.08997 * 109.47226 * 299.99828 * 7 4 3 9 9 C 1.52999 * 109.47057 * 59.99851 * 7 4 3 10 10 O 1.42905 * 109.47114 * 55.00379 * 9 7 4 11 11 N 1.46505 * 109.47259 * 180.02562 * 7 4 3 12 12 C 1.38815 * 119.99872 * 155.00308 * 11 7 4 13 13 C 1.39795 * 119.58978 * 359.97438 * 12 11 7 14 14 C 1.38592 * 119.49615 * 180.02562 * 13 12 11 15 15 C 1.38397 * 118.67826 * 359.97438 * 14 13 12 16 16 C 1.40559 * 119.14805 * 0.02562 * 15 14 13 17 17 C 1.41317 * 119.78326 * 180.28127 * 16 15 14 18 18 H 1.07998 * 119.99795 * 359.71829 * 17 16 15 19 19 C 1.40020 * 120.00268 * 179.72614 * 17 16 15 20 20 N 1.30752 * 119.99675 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47134 * 90.00112 * 21 19 17 23 23 H 1.48500 * 109.47445 * 209.99476 * 21 19 17 24 24 H 1.48496 * 109.47369 * 330.00053 * 21 19 17 25 25 N 1.31956 * 119.58128 * 179.97438 * 12 11 7 26 26 H 1.08998 * 109.47050 * 59.99974 * 1 2 3 27 27 H 1.08990 * 109.47470 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47045 * 300.00605 * 1 2 3 29 29 H 1.08999 * 109.47045 * 239.99394 * 2 1 3 30 30 H 1.09004 * 109.46932 * 119.99598 * 2 1 3 31 31 H 1.08999 * 109.47419 * 59.99623 * 3 2 1 32 32 H 1.09004 * 109.46653 * 299.99769 * 3 2 1 33 33 H 1.08996 * 109.47349 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47245 * 300.00491 * 6 4 3 35 35 H 1.09010 * 109.47242 * 59.99969 * 6 4 3 36 36 H 1.09002 * 109.47217 * 174.99607 * 9 7 4 37 37 H 1.08997 * 109.47265 * 295.00031 * 9 7 4 38 38 H 0.96693 * 113.99848 * 180.02562 * 10 9 7 39 39 H 0.97001 * 119.99904 * 334.99778 * 11 7 4 40 40 H 1.08001 * 120.25000 * 0.02562 * 13 12 11 41 41 H 1.07991 * 120.66369 * 180.02562 * 14 13 12 42 42 H 1.07992 * 120.42668 * 180.02562 * 15 14 13 43 43 H 0.97000 * 119.99838 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0806 0.8325 -1.3063 7 6 4.0800 2.8794 0.1262 8 1 3.7171 3.4687 -0.7158 9 6 3.5695 3.4894 1.4332 10 8 3.9471 2.6530 2.5287 11 7 5.5451 2.8795 0.1262 12 6 6.2391 4.0092 -0.2850 13 6 5.5314 5.1419 -0.6978 14 6 6.2263 6.2685 -1.1085 15 6 7.6098 6.2366 -1.0963 16 6 8.2640 5.0677 -0.6702 17 6 9.6762 5.0225 -0.6467 18 1 10.2493 5.8827 -0.9598 19 6 10.3326 3.8625 -0.2177 20 7 9.6387 2.8212 0.1617 21 14 12.1993 3.8025 -0.1873 22 1 12.6881 4.2693 1.1349 23 1 12.6536 2.4078 -0.4186 24 1 12.7403 4.6827 -1.2540 25 7 7.5586 4.0003 -0.2812 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 5.1706 0.8321 -1.3057 34 1 3.7173 -0.1912 -1.3959 35 1 3.7176 1.4218 -2.1485 36 1 4.0041 4.4801 1.5660 37 1 2.4832 3.5711 1.3961 38 1 3.6555 2.9789 3.3911 39 1 6.0301 2.0901 0.4137 40 1 4.4514 5.1390 -0.6968 41 1 5.6987 7.1539 -1.4308 42 1 8.1795 7.0987 -1.4101 43 1 10.0934 2.0177 0.4593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261511174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:36 Heat of formation + Delta-G solvation = -33.290305 kcal Electronic energy + Delta-G solvation = -22053.581217 eV Core-core repulsion = 18904.926483 eV Total energy + Delta-G solvation = -3148.654734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.92945 -37.61515 -35.79451 -34.51580 -33.24940 -31.68718 -30.31527 -28.96475 -27.73127 -26.14301 -25.33111 -23.17416 -21.65532 -21.42577 -20.18988 -19.49487 -17.39662 -16.99380 -16.16991 -15.41704 -15.28443 -14.73530 -14.53534 -14.41398 -14.01040 -13.71180 -13.21191 -13.13931 -12.80681 -12.55836 -12.38938 -12.05533 -11.99276 -11.85817 -11.55237 -11.29985 -11.19256 -10.95219 -10.91234 -10.63896 -10.57686 -10.42703 -10.31492 -10.12766 -9.87979 -9.63384 -9.42378 -8.81364 -7.86234 -7.44051 -6.41523 -6.26962 -4.42634 2.91895 3.14205 3.17424 3.29252 3.34529 4.02257 4.17715 4.60684 4.80425 4.88885 4.91290 5.03826 5.15291 5.29840 5.47282 5.52683 5.60885 5.72764 5.75711 5.86133 5.89075 5.94127 5.99472 6.06676 6.12800 6.19219 6.20753 6.27659 6.28824 6.52066 6.61124 6.67665 6.91387 6.94630 7.02113 7.31102 7.65491 7.84542 7.87806 7.98805 8.23074 8.44864 8.78433 8.86357 9.19409 10.31106 10.46594 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.004230 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.295056 B = 6617.637297 C = 7121.453566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.092 4.092 5 H 0.081 0.919 6 C -0.146 4.146 7 C 0.174 3.826 8 H 0.084 0.916 9 C 0.058 3.942 10 O -0.562 6.562 11 N -0.722 5.722 12 C 0.415 3.585 13 C -0.373 4.373 14 C -0.032 4.032 15 C -0.320 4.320 16 C 0.293 3.707 17 C -0.435 4.435 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.714 5.714 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.532 5.532 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.369 0.631 39 H 0.397 0.603 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -4.537 1.593 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.111 4.111 5 H 0.100 0.900 6 C -0.203 4.203 7 C 0.066 3.934 8 H 0.102 0.898 9 C -0.022 4.022 10 O -0.366 6.366 11 N -0.357 5.357 12 C 0.175 3.825 13 C -0.398 4.398 14 C -0.056 4.056 15 C -0.343 4.343 16 C 0.166 3.834 17 C -0.467 4.467 18 H 0.100 0.900 19 C -0.154 4.154 20 N -0.335 5.335 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.187 1.187 25 N -0.253 5.253 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.214 0.786 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.858 -5.761 1.401 14.159 hybrid contribution 0.218 0.929 0.328 1.009 sum -12.640 -4.831 1.729 13.642 Atomic orbital electron populations 1.21775 0.96297 1.01241 1.01595 1.21558 0.95290 0.97210 1.02124 1.21653 0.94760 0.96728 1.01804 1.21272 0.94860 0.95973 0.99037 0.90038 1.21851 1.02054 0.99770 0.96674 1.20757 0.82089 0.95851 0.94695 0.89777 1.22875 0.96951 0.94119 0.88248 1.86517 1.81704 1.51407 1.16959 1.44083 1.02823 1.15050 1.73730 1.18550 0.90037 0.85174 0.88743 1.20599 0.97366 0.96903 1.24982 1.20575 0.94098 0.95620 0.95309 1.21517 0.93839 1.00660 1.18256 1.18200 0.93108 0.85740 0.86319 1.19572 0.90314 0.99215 1.37624 0.89996 1.26045 1.00122 0.95337 0.93895 1.70162 1.36361 1.01703 1.25287 0.86392 0.82957 0.78288 0.79498 1.19559 1.20273 1.18654 1.68232 1.02412 1.29052 1.25599 0.92900 0.93077 0.92953 0.91841 0.92078 0.91800 0.92198 0.91878 0.93010 0.93048 0.93195 0.93968 0.78559 0.76806 0.89392 0.89123 0.88857 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.22 5.69 -26.73 -0.15 -1.37 16 3 C -0.11 -1.22 4.47 -26.73 -0.12 -1.34 16 4 C -0.09 -1.24 1.83 -90.62 -0.17 -1.41 16 5 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 6 C -0.15 -2.01 8.79 37.16 0.33 -1.68 16 7 C 0.17 2.78 1.63 -67.93 -0.11 2.67 16 8 H 0.08 1.38 6.43 -51.93 -0.33 1.04 16 9 C 0.06 0.84 6.26 37.16 0.23 1.07 16 10 O -0.56 -8.20 12.73 -35.23 -0.45 -8.65 16 11 N -0.72 -14.81 4.49 -53.91 -0.24 -15.05 16 12 C 0.42 10.25 7.63 -155.33 -1.18 9.06 16 13 C -0.37 -8.63 8.84 -38.87 -0.34 -8.97 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.32 -8.24 9.83 -38.65 -0.38 -8.62 16 16 C 0.29 8.32 6.55 -85.00 -0.56 7.77 16 17 C -0.44 -12.02 9.14 -37.74 -0.34 -12.37 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 20 N -0.71 -19.37 11.46 55.55 0.64 -18.73 16 21 Si 0.90 19.10 29.56 -169.99 -5.02 14.07 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 N -0.53 -14.94 7.89 -10.33 -0.08 -15.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.69 6.28 -51.93 -0.33 0.36 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.01 7.44 -51.93 -0.39 0.62 16 34 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.05 0.83 7.76 -51.93 -0.40 0.43 16 37 H 0.04 0.50 6.60 -51.93 -0.34 0.16 16 38 H 0.37 3.77 9.12 45.56 0.42 4.19 16 39 H 0.40 8.53 8.51 -40.82 -0.35 8.19 16 40 H 0.09 1.80 6.15 -52.49 -0.32 1.47 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -30.61 343.74 -8.96 -39.56 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.05 Total: 14.13 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.93 Total: -15.49 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.31 Total: -48.81 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.45 Total: -8.65 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.61 -8.96 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261511174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds